Array 1 821140-820249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023429.1 Neisseria sp. 10022 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 821139 34 83.3 30 A..-..AT.T.-........................ AGATACACAAAACGAGACAATTAGAAGGTT 821075 36 100.0 30 .................................... GGCTTCGCGCAAAATATCCTTCCAAGATCA 821009 36 100.0 30 .................................... AATTAAATGAAGTTTAGCACAAACAAGGAA 820943 36 100.0 30 .................................... AATCGGTTTAAACAATTCTTCAGAAAGCCT 820877 36 100.0 30 .................................... AGATACCTGATTGCCGTTCCAAATCGGTAA 820811 36 100.0 30 .................................... TTGTATTTTTCGGGGTTCTTCGTGCGAACT 820745 36 100.0 30 .................................... ACCCACATACGTCGCCAGCTTGCGCGCGGC 820679 36 100.0 30 .................................... ATCGCCTGTCGGAGCGTAGCGAACACTTTT 820613 36 100.0 30 .................................... TCAAAGCTGGAAATACAAAGATGATGAGGC 820547 36 100.0 30 .................................... ATTGGATATTTTCTTACATCAGCATAACTA 820481 36 100.0 30 .................................... TTTTTTAACCTTTATTGATAAATTTCAAAG 820415 36 100.0 29 .................................... TTCGCAACCGCGCAGCCCAACTTTTTTTC 820350 36 100.0 30 .................................... AATCAGGGTGTGGCTTGTTGCAGCGTAAGG 820284 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ACCTGCCAGCGGCTGCCCACCGGCCAATCACGCAGCTGATAATCCGACAATACCAGCCGATATTCGCCGCCATCCTTATCCCAAGCCTTGGCCGCAAACTGCACCCGCCGCTTATCACGGCGAGGCAAATCGTCCACCACCACCGTCAACGCCACATTCTCCACCCGCGCCACCGGCCATTGCTGCACCAAAGCCGACTCCGTACGCCATATTCCATAAGCCATGCTAAACAACACACACAACAACAGCGCCGCCGGTTTCCAACGCCAAGCCGCCAATAAAATCAACCCAAACGCCGCAAGCCAAACCCACAACGGCGGTATGACAGGCAGCAGGAACGACACCAATACCCCGAATACCCAACACGGCAATACATAACGCAACATATATTATTTCTCTTGTAATAGTTTTTTATTATGATAAATTAGAAATAATGGATATGCATAGAAAAAGCCGTCTGAAAAATATTTTTCAGACGGCTTTTATTATTGATTGGTGTT # Right flank : AAACCAAGCGGAAAGACTTATTCAATAAGGTTTTCCGCTTGATTTTTCTAACTTAAAACCTTCTTAAAACAACAATAATTGGTCTGCATTAACCTTTTTTTCTTGTACTTTTAGCTCTCCTAAAAGCAATTTCATACTGGCAAATTGCTTTTCTGTTACTTCCAAACAGCGTACAGAACCTTCTTCAGGCAAATTGGCACACAGCCTATTGTGGTGTTTTTGCAACGAATCCCTACCTTTTACAATTCTGCTGTAAACGGATAATTGCAGCATTTGGTAACCATCTTTGAGCAAAAAATGTCGGAATTGGTTGGCCACTTTTCGCTTGGCTGCCGTCGTCACCGGCAAATCAAAAAAAACGATAATTCTCATAAATTTCGCCTCACTCATATTGATATGCCTTTAATGTTTGTAACTCGGGTAATTTCAAAAAACGAGCATTTTTTTGACTCAAGGCCGTCTGAAACGATGAAATCATTTTATCAATGGCTGCCAATGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 2060186-2058630 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023429.1 Neisseria sp. 10022 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2060185 32 100.0 34 ................................ TACAGCTTTTTATTATGGTAGGTACTCTATTAGG 2060119 32 100.0 34 ................................ CCAACAGACCTTTCAGCATCAGTGTTTTGGCCAG 2060053 32 100.0 33 ................................ TCTATCACCAAAAAACAATGCACATCTACCAGA 2059988 32 96.9 34 A............................... GGTTTGTATGGCCTCAATATTCTGCGCCAACTCG 2059922 32 100.0 34 ................................ CAACAAATTCCCGCGTGGCCAACACCACTGCCGG 2059856 32 100.0 34 ................................ GAAAACGAAGAAAGTGATCTAAAACTCAAATAAC 2059790 32 100.0 33 ................................ TGTTATGGGGTAGCTGCTGGCAGCTTTGTTGTG 2059725 32 100.0 34 ................................ TTTACATAATTGTAAATCTCAAAAATGTATTTAC 2059659 32 100.0 33 ................................ CGAAATCCGAACAGGCAGATTTGCCTGACGAAC 2059594 32 100.0 36 ................................ TGTACAGAGTGGGATTTTCAGACGGCCTGAAAGGTG 2059526 32 100.0 34 ................................ ATAGACTGTTCCGTTTGCATAGCTGGTATTAATG 2059460 32 100.0 34 ................................ TATAAAAGGCAGTAGAATCATCGCTACTAAGAGC 2059394 32 100.0 35 ................................ TGCCTAGTTTTGAGCTGTCTGGCGGACAAGTCGAA 2059327 32 100.0 36 ................................ CCCCGCCTAATGCAACATTACCGGCCATCTGTCCGG 2059259 31 96.9 36 .......-........................ AAAGCTGACGAAAACGCCCCAAAACCTGAACCTGTG 2059192 32 100.0 35 ................................ AAAACATGGCTTGACGGTTTCGGTTGTGAAGACCT 2059125 32 100.0 33 ................................ CGAAATCCGAACAGGCAGATTTGCCTGACGAAC 2059060 32 100.0 35 ................................ CCGATATGCCGGAAACTGCTCCAATTTACGATGAT 2058993 32 100.0 35 ................................ CCGATATGCCGGAAACTGCTCCAATTTACGATGAT 2058926 32 100.0 35 ................................ AAAATCTCTTGGGTATGGTTACAAAAAATGCCAGT 2058859 32 100.0 34 ................................ CATTCTTTTGCGTAGCCCGCGATGTTTGAGGCGG 2058793 32 100.0 34 ................................ GTCATCAATCGTCTTGCTCGGCTTTTCATGGATT 2058727 32 100.0 34 ................................ AGGTACTAATCCATCTCCTAATAATTCAGTAGAT 2058661 32 90.6 0 .........TT....................T | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.4 34 TCAGCCGCCCACGGGCGGCTGTGTGTTGAAAC # Left flank : AAACAAGGGGAAATGTTGTGCTGATGCTGATTACTTACGATATTGCCCTGGACGACCCGCAAGGCCAAGCGCGCCTGCGCCGTATCGCCAAACATTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTTGAGTGCGATATTGCGCCCGATCAATGGGTTGTTTTGAAAGAAAAATTGTTGAAAACCTATAACCCGAAACCGACAGCCTGCGCTTTTACCACTTGGGCAGCAAATGGCGGCGCAAGGTGGAGCACCACGGCGCAAAAGCGGCGGTGGATGTGTTTCAAGACACGCTGATCGTGTGAATCGCCAACCTGCGGTGCTCATCAAAATGCGGGCAGGTTGGCGAAACGGGAAGGTTCTTTAACAATCAGGAACTTAGCAAAGTATGTATGGCGGGAAAAGGCTGTGCTATACTCGCTTTGCGCCTTTGTCGGCGACTTTGGCGATTTAGGGCTGTAGAAGCCTTGAGTGGCAAGGGTTTCCGAGGAGGCT # Right flank : GTTCCCGGAGCAAGTCAGATGATGACTAATATCTTTCCGTCGCTTTAGGATGTCTATATGTGGCAATAGCCACTAAACCCCACACGCTAAATTAACGAAAGCAACCGTAAAAAGCGGTGTATTACGATGTCTCTTTGTTATTGAGTTAATCTAAGTTTGAACCAAGTTAAAGTATGCTAAAAAATCATGCCGTCTGAACGTGATTTTGGTATATGATTTAAAAATGAATGCCATTTGATTTCAGGAGAAAAATCCATGTTCCAATTTGCCCATCCCAACAAACTCTGCTGCGCCAAGCGGTGACTGAGGCTTACCGCCGCGATGAAGTCGAAGCGGTGAACGATATGCTGCAGCAGGCGCAGATGACGGATGAGGAGCGTCGTGCTGCCGATGATTTGGCGCGCCGTTTGGTGACGCAGGTGCGGGCGAGCCGTACCAAAGCGAGCGGTGTGGATGCGCTGATGCATGAATTTTCGTTGTCGAGCGAAGAGGGTGTGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCCACGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //