Array 1 725-1533 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLW01000113.1 Pseudomonas aeruginosa strain Pae_CF67.04h CF67.04h_contig_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 725 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 785 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 845 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 905 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 965 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 1025 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 1085 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 1145 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 1205 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 1265 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 1325 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 1386 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 1446 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 1506 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTAGTTCACTGCCGTATAGGCANNGTTCACTGCCGTATAGGCAGCTAAGAAATGATCAAGAAGAACCCGATGGCGCCACTTGAG # Right flank : TGATATCCAGCTGCTCCAGGAACCGCTGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTATAGGCAGCTAAGAAATCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCGGTTCACTGCCGTATAGGCAGCTAAGAAATGTCCGGTCCCGGAAAAGACCAACGCGGGAGTGTTCACTGCCGTATAGGCAGCTAAGAAATCTACGAGCAGACCGAGTTGAAAGGACAGGAGGTTCACTGCCGTATAGGCAGCTAAGAAAGAGTGTGAGGCCGGGCAAACGGATTTGTGTTCACTGCCGTATAGGCAGCTAAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1605-1868 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLW01000113.1 Pseudomonas aeruginosa strain Pae_CF67.04h CF67.04h_contig_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1605 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 1665 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 1725 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 1785 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 1841 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 31 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTAAGAAAGAGAACGATTCCGTCTTGTTGGAGCTTTCTGTGTTCACTGCCGTATAGGCAGCTAAGAAACGACGAGCAACTGCGCTTGCGCGTGCGTAACCGTTCACTGCCGTATAGGCAGCTAAGAAAGGAAGGCTGGCGCTCGAACGGATGTGTACAGGGTTCACTGCCGTATAGGCAGCTAAGAAATCCGGATCACCAGGGCGACAGATGGCCACCTCGTTCACTGCCGTATAGGCAGCTAAGAAACTCTGGCGGTAACCTTCCATGATCTGCGCAGCCGTTCACTGCCGTATAGGCAGCTAAGAAATGCATGCACATCGGCGAACTGCTGACGTGCTTGTTCACTGCCGTATAGGCAGCTAAGAAATGGCGCCGCCCGATTTCACGTAGCTGCTCGATGTTCACTGCCGTATAGGCAGCTAAGAAATGATATCCAGCTGCTCCAGGAACCGCTGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-208 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLW01000060.1 Pseudomonas aeruginosa strain Pae_CF67.04h CF67.04h_contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 61 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 121 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 181 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 35 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 318-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLW01000162.1 Pseudomonas aeruginosa strain Pae_CF67.04h CF67.04h_contig_162, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 317 28 100.0 32 ............................ TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 257 28 100.0 32 ............................ ACGATGATCTATCAGACCTATCGTGGCTACGC 197 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 137 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : TTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : ATTGAGCTTGTCGTTGTACTCGTCGAGGCTCATGTTCACTGCCGTATAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 322-1670 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLW01000106.1 Pseudomonas aeruginosa strain Pae_CF67.04h CF67.04h_contig_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 322 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 382 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 442 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 502 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 562 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 622 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 682 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 742 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 802 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 862 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 922 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 982 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 1042 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 1102 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 1162 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 1222 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 1282 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 1342 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 1402 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 1462 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 1522 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 1582 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 1643 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //