Array 1 477-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFO010000011.1 Leuconostoc gelidum subsp. gelidum strain Vvan9 NODE_21_length_8422_cov_63.553432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 476 36 100.0 30 .................................... AACATTTGAAAGTATTAATTCTACTGATAT 410 36 100.0 30 .................................... AACGTTAGATAAGGTTATTGATGTATTGGG 344 36 100.0 30 .................................... AAATATTTTGGTGGCGACATTTATAACAGC 278 36 100.0 30 .................................... TAGTCCTCTAGGTAATAAGTTAGGTACTAA 212 36 100.0 30 .................................... GAATGATTATTACAGTGTTAAATCTTTAAC 146 36 100.0 30 .................................... TGCCATAGCATAATCGAATGTAAGATAATC 80 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : GGTGCGCAACTTGATGTGAATAAGTTGTATCAAAAAAATATCGTTAATACAATGAAAAATTATGCAGATGATCAAGCGTTAGAAGTGTTTTATAAAATAAATTCTGAATTAAATCATGTCTTAGAAAACATTATATTAGAGAATAATTTGCCCTTTTATTTTCAAACAGAATTCAATATTGTCGAATTAATAAATGAGAAAAAAATTAAGATAGAAACACTGACAAACAGCTCTGGATTTGGTAAAATAGAAGATGTAGTAAGCGTTGCTGGTGAGTTTTCAGAGCAACGTTTAATCGTTTTTACGAATTTGTATTTGTTGTTATCGGTTGATCAGATTGACTATCTGAATAATCTAGCGAAGACAATGAATTTATGTTTAATTTCTCTTAATTTGACACAAAACCCTGTTATGACTAAACAGGGTCTACCTCCAGAAATCTTTATTGATGAGGATTTCGTTCAATTTGGTGCTGACTAGCTGATGCGAACAGGCGGTCT # Right flank : CTCGTCAATTCGGAAAAGGGACAGTAGGCTGGCTTCAGATGTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1-3797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFO010000003.1 Leuconostoc gelidum subsp. gelidum strain Vvan9 NODE_19_length_116437_cov_63.831059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TCGTCAATTCGGAAAAGGGACAGTAGGCTG 67 36 100.0 30 .................................... CAGATAACTTGGATCATAATTGTTACCCAC 133 36 100.0 30 .................................... AATTCAATCGTTGTGCAAAAGGTTTATGCA 199 36 100.0 30 .................................... CATATGGATACAATGAATTGACATCCAATG 265 36 100.0 30 .................................... CGACGTACAAAAATTAAAACAAGACGATGA 331 36 100.0 30 .................................... ACATTCTGTATGGGAACAATACACAGGTCT 397 36 100.0 30 .................................... TTAAAGATATTGGTTTAGTTTAAATGTTAA 463 36 100.0 30 .................................... ACCATATTAACGGTAATCCACTAGACAACA 529 36 100.0 30 .................................... CTTAACGCAATCAAGTATCTTAGCCGTTAT 595 36 100.0 30 .................................... TCAATTTGCAGAACGAAAGCACAATGAAGA 661 36 100.0 30 .................................... AGGTGTCATGGAATCAATCGGTGGTATGTT 727 36 100.0 30 .................................... CGTTCATATCATCAACTGAAATCACTTACC 793 36 100.0 30 .................................... GGTGGAATATTAAAGTACCACACGGCATTT 859 36 100.0 30 .................................... CCCAAAAGAAAAACAAACGGAGTTATTGGC 925 36 100.0 30 .................................... ACGTTTCTCGGTACTCGTTACGTTTATTTT 991 36 100.0 30 .................................... CTCTCTATTACGATATATGATTCACCTTTA 1057 36 100.0 30 .................................... ATGAACATGTGACATTCAGAATAGAAGAGG 1123 36 100.0 30 .................................... TATAGGCTTCAATACGTTGGTAGGCACGGT 1189 36 100.0 30 .................................... AACAAATAAACATTGCAGGGTTAGGCATGC 1255 36 100.0 30 .................................... TAAGATTGTCAACACTACCGCCAACACATA 1321 36 100.0 30 .................................... CATATTTTATCGTGTCAGAATACATCCCCT 1387 36 100.0 30 .................................... TTATATACAAGGCTATACGACATAGATGAT 1453 36 100.0 30 .................................... CTTGAACTGAATCCCAACCATACTTCTTGA 1519 36 100.0 30 .................................... TAAAGTAGAAATGCATGATGTGTTTATTGA 1585 36 100.0 30 .................................... GAGCTTTTCATGACATCGCCAGACAATACG 1651 36 100.0 30 .................................... GGTAGATGCAGGTGTTTATCAATCCGTGGG 1717 36 100.0 30 .................................... CACCAAACGTTGGTATCAGTCAAAATTGTT 1783 36 100.0 30 .................................... ACTTAGTCCTTTTATCGTTTTCGTCCACCT 1849 36 100.0 30 .................................... TAATCTTTCTTGCGCTAATTCATATACGTT 1915 36 100.0 30 .................................... ACGAGAGGAACAGCTAATAGCAGTAATGGG 1981 36 100.0 30 .................................... GAGAAATATAAGGTCAATGATTACGACTAT 2047 36 100.0 30 .................................... ATCTTGCAGGAACAAGTGGTGCTTGGGTTA 2113 36 100.0 30 .................................... AAAAAAATCATGTAGTTTATCTCTAATTGT 2179 36 100.0 30 .................................... TTTCGCTGATAGCTTGTTAATGAACACACT 2245 36 100.0 30 .................................... GACGATGCACAAGATTGGATAGATGAGTTG 2311 36 100.0 30 .................................... ACCCAACTATCTTAAGTAGTCAGGTCATAA 2377 36 100.0 30 .................................... ATTAAGTCCATTATTTCAATAGCTCCTTTC 2443 36 100.0 30 .................................... CTTGTTATAGCCCGCGCCTGCTTCATAATC 2509 36 100.0 30 .................................... TGTTTGGTCTTGCAAGTCGCGCAATAATCC 2575 36 100.0 30 .................................... ATATAAATGCGGCGCGCACAAGAAGAGTAA 2641 36 100.0 30 .................................... ACTAGACGATGACTTTGTTCCAGCTGAATT 2707 36 100.0 30 .................................... GTTAGGATACATTTTAACCAAGTATCCTGT 2773 36 100.0 30 .................................... GCGATTTGAAAGATGTTGCCGTCAATCCGT 2839 36 100.0 30 .................................... CAGATAGGCGGCATTGCTAAACTATTTGTA 2905 36 100.0 30 .................................... ATTGAGGAGAAAAATAATGAACAAGAAATT 2971 36 100.0 30 .................................... GATAAGGTAGCTGCTAAGCAAGCAGAAGTC 3037 36 100.0 30 .................................... ACCGTCCATGTACGCCTTACTGTTAACAAA 3103 36 100.0 30 .................................... AATAATACTGAACACTATCGCCTGACTTAA 3169 36 100.0 30 .................................... GACCAATTGGTTTAACCGGTGCTACAGGAC 3235 36 100.0 30 .................................... GCGTTGTCTGAATGCCCTTGTCAACCCATT 3301 36 100.0 30 .................................... GGTCGATAAAACGATCGAAGAAGCGCTTGA 3367 36 100.0 30 .................................... AATAATTTTTTTAGTAATCCTGTCTGCTTG 3433 36 100.0 30 .................................... TGTTCCGCGTTGGAATTACATTGGCGACGC 3499 36 100.0 30 .................................... GTTCATCTTGTTTAATACGTACTATTATTT 3565 36 100.0 30 .................................... ATCAGACTCAGGTAACAGATTATATACAGG 3631 36 100.0 30 .................................... TACACAATTTAATGCAAAGCCATTGCTCAG 3697 36 94.4 30 ...........................A.......T GTATCGGGAACAGGATATCAGATCTTGAAG 3763 35 77.8 0 .............AC..T..T...-.A.A.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 58 36 99.5 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : | # Right flank : CGCTTAGGCGCTTTTTATATGCCATGTATGTCAAAAAAAGGTTTACGCGAATAACGATTATGGTATGATATATTATGTTATAAATAATCACGTCAAACGTGAGATGGAGAAAGGGAGATTTTCCTGTTTTGGTAAATAAAAAATTGCGAGTGAAAGAACTACTAGTTTCAACAATAATTATTGGTGGCGTTATGGGCACCATGTCTACGGTTAATGCTGCTGAAAATACAGCGCATGTATCGACACAAGTGCCAAGTACAATAACATCAGGTTCGAGTGGTACATCACAAGCGCCAAGCACTAAGACATCAAGTTCAACCATAAATGAGTCGAGACAAAATGATAATTATAATGTGACGCCGTCAACAAGGTCTATTCAAGTACATCAAGCGAAATTTAAAACCGGTTCTGTAATTGTATTGACCACTTCAGCAAAAACATCCAGTGGTACACAACTTCAAAAGTATGGTAATCAATCAGGTGTTGTGACGAATGTCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //