Array 1 64656-65417 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQJ01000008.1 Treponema pectinovorum strain Marseille-2-CSURP6642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 64656 36 88.9 30 A..TT.A............................. GTAAAAAAAACGAAAAAGGTATCGATTTTG 64722 36 100.0 30 .................................... TTGTGGTTATCTTGTCTACTGTAGGTTATA 64788 36 100.0 30 .................................... TGAATGTTCCAGTTATAGACGAGGAAGCGG 64854 36 100.0 30 .................................... TGCAAAGGCGACATAGTACCAGCAACACAT 64920 36 100.0 29 .................................... ATTTTTATTTTGTTAGAAACCCACATTGA 64985 36 100.0 30 .................................... AACTTTGAACCAATGGTAAAGTATCCAAAG 65051 36 100.0 30 .................................... ACAGCCGATTGATAATCGTAAGACTGTTTT 65117 36 100.0 31 .................................... GTTATCGTTTCGCTGGAATTGTCTTTGTGCG 65184 36 100.0 30 .................................... TTTTTCTTTTGATTATAACGAACAAATAAA 65250 36 100.0 30 .................................... TGCATATCAAGGGGGTGCAATATGTTTTTC 65316 36 100.0 30 .................................... GAACGGTTGACAGTTACGATATGAAAAACG 65382 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.1 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Left flank : TGTTATTCCTGTCTGCTTTGTAAAATCTCTAGCCGCTGCCTGCCATTCACCTATTTTCTGCCTTGCTCTTGTGTTGTCTACCCCTGCCGCTTCCTGCGTTAATACCTGCCGTTTGTACCGCCTTATGTTTCGTTCTATGCCTCTTAGGTGTTGTTCTCCCTCGTAGCGCGTCAGGCTCTCGCCGTTAAACTCTACTTTTTCGTTTGCTAAACTGTCTAAATCGTCTTGGCTGTAATGCTCTTTTGTTCCCTCAAAGTAGGGATAAAATGAATGTCGGCAGTTTATTCCACATATTCCTGTAGCACTTCCGAGTTCGCAAACTGAAAAAGGGCGATATTTGGGATTTGTTCCGCTACGTGAAAAAATTTGTCCTTGCCATTGTTCGTGTTCTGGTCTTGAGCCGATATGTGCAGAAACTTCAAACTTTTCAACTCCCAATTCGTCCGCATTGTTCAATATCTGGTTCGCTGCAATTTGGTTTATCGATGTGAGAATAAAAT # Right flank : CCGTCTGATGTATTTTCTTCTGTTGTATGGAAATACAGTACATCAGGCGGATTTTTTTTGTGCGCTTATCAGAATAATAAGAGTTGTTCGTTCTGCTTTTTTTGTTGTTTTTCTCTTGAATGATAACTGATAATATTTCCATATTGATGATCCGTTATCGTTAGAATATCCACTTTTCCCTGCGCAGGCAAGTTTTTTTGTATCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 208-645 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQJ01000009.1 Treponema pectinovorum strain Marseille-2-CSURP6642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 208 37 100.0 30 ..................................... AGATTAGTTTATTTTTAAAAATATTTTTAA 275 37 100.0 30 ..................................... TCCAAGCATTTACGAAAGAAACATCTGTGG 342 37 100.0 30 ..................................... CACCATACTCACCACTAGCAAAATATGAGA 409 37 100.0 30 ..................................... TGTTAATTACGACGGTATTTATTCAGGTGG 476 37 100.0 30 ..................................... TAGTGGATTTACTCGTTGGTATAACAGGGT 543 37 100.0 29 ..................................... CAGAGTTTGCTTCTCATCCAACTAATGCT 609 37 86.5 0 C.............................T.AA..T | ========== ====== ====== ====== ===================================== ============================== ================== 7 37 98.1 30 AATTTTAACTGATTAATTTTTCTGGTCAACCTGCAAC # Left flank : AATGATACAAAAAAACTTGCCTGCGCAGGGAAAAGTGGATATTCTAACGATAACGGATCATCAATATGGAAATATTATCAGTTATCATTCAAGAGAAAAACAACAAAAAAAGCAGAACGAACAACTCCTTTTATTCTGATAATCGCACAAAAAAAATCCGCCTGATGCACTGTATTTCCATACAAAAAAAGAAAATACATCAGACGGA # Right flank : TATTTTATTCTCACATCGATAAACCAAACTGCAGCGAACCAGATATTGAACAATGCGGACGAATTGGGAGTTGAAAAGTTTGAAGTTTCCGCTCATATCGGCTCAAGACCAGAACACGAAGAATGGCAAAGGAAGATTTTCACAAAGAAAGGATTATACAGCATTTGCGGACTGGGGAGTACAACAGGATTGTGCGGAATAAACTGCCGACATTCATTTTATCCCTACTTTGAGGGAACAAAAGAGCATTACACGCAGGACGACCTAGACGAGATAGCAAGCGAGAAAATGGAGTTTAACGGCGAGGAACTATCATACTATGACGGTGAGCAAAAACTTAGAGACATAGAACGAAACATAAGGCGGTACAAACGGCAAGCATTAACGCAGGAAGTGGCAGGGGTAGACAACACAAGAGCAAGGCAGAAAATAGGCGAATGGCAAGCAGCCGCGCGAGATTTTACAAAGCAGACAGGAATAACACGAGATAGCGCAAGGGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTTAACTGATTAATTTTTCTGGTCAACCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //