Array 1 57310-57746 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHO01000026.1 Clostridium sp. 1001271st1 H5 strain 1001271st1_H5 NODE_26_length_74397_cov_21.2529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 57310 33 100.0 35 ................................. GTCTTCCATCCTGCCATTGCCATGTATTCCAGGCC 57378 33 100.0 34 ................................. AAATAATCATCATGGGAAAAGTTGCGGGAATCAG 57445 33 100.0 36 ................................. CTGATGTGCGGGCGGTGTTTCACACTAGGAATAGAC 57514 33 100.0 34 ................................. GTACATATAGCATTGGGAGGATAATCTCCCCTAG 57581 33 100.0 34 ................................. GTAAGAATCCGTCCTACGGCTACGGCAGTCCAAT 57648 33 93.9 34 ........................A.C...... GGTTGTTGCCATAGGTTTCCACAATCTGGTGCAT 57715 32 75.8 0 ..........T....A....A.CAA...-...C | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 95.7 35 GTCAGCTTCTGCGAAGAAGCTGTGGATTGAAAT # Left flank : GGCAGGTTATTTTGAGGAGGAGGCGTGTAAGTATTACGAAATACTTCAAGAATTTTTGAGAGTATATGAAAATAAAGATTAAAATTGTTATCCCTTACATGACTCACTCGTGAGCGGTAGTCCAATTATACAAGATGGGAAGCTGGCCGGGGCGGTGACACATGTGTTTGTACAGGATGCAAGCCGGGGGGATGGGATTTTGATTGAGAATATGTTGGAGTATTGAGGGTGAAGGAATAAGCACAAAATGGCTGTGATTCAACCAAAATCAAAACTAGAGTAGATGAGGAAAGGCTTTCGGAAGATTACGAATTATCCTTCATCATATAAGTGCGAATGCCAAGTGAACAGGAAAACTTGTGGGGATTCGCACCCTTTTTAAGGGACTTTGAGTAAAAAAAATCAAAGGAGATGCAAGCAATTGTAGAATTATGAGATAAAATTGTACAATATGTATACAATGTGACTGATGTGAAATGGAAAGATTGGATATGTTTGCT # Right flank : CACCAGAACCGCAACCATGACACGCCCATGCATGTCACCTCCTTCAAAGAATCCATAGAACAAAGCAATCATTTCCCATATCATCCGATAATGATTGGCTCGTAGGAGGCATCTGCTGATGCCTCCCATACCAATCAAATGACCATGAGCATGTCGTCATACATCGCTCCGCACTCTTTCCCATGTCATTCTTCCGCCCTCAATCACTCCCCCTCGTCAAAATTCGACAAATCCCGTCGCTCCCCCTCCCGAAAATCTGCCAAAGTTTTAAATATCAGGAGGAAAAACAGTGATGTTTGCGTTCTATAATCGTGCCTGTGAGAATATAATGAAATGAAACATCAACGTGCTGAAATTACAAAAATGGTGTCGAATTAAAGTAAAATAAAGTAAAAAAACCAATTATTTGTTACAGAAATGTTAATCGTCACAATTAATAATTGCAAAATGACACCAAAAATGATACAATTTAATCTCGACGCGTGTCTAAAATTGCGACC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTTCTGCGAAGAAGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 108371-110822 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHO01000020.1 Clostridium sp. 1001271st1 H5 strain 1001271st1_H5 NODE_20_length_121015_cov_24.9022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 108371 33 100.0 35 ................................. ATTTCCTGCCCTATAGATAATGAACACCTTTTTAT 108439 33 100.0 33 ................................. CAAGATTTTCATTGCTAAATGGAAAGTATATTA 108505 33 100.0 34 ................................. ATGAGTTCGGCCTCCCATACCTGCCGATAATAGT 108572 33 100.0 34 ................................. ACTGGGATATTCTGGACGGTAATCATACATATTA 108639 33 100.0 35 ................................. AAGCGACAGGCAGAGGAAGATTTTAACGTTGAGTC 108707 33 100.0 33 ................................. CAATGGGTATTTTGTGCTTGATGAAAAAACAGG 108773 33 100.0 35 ................................. GTATATCTCTATCCGATTCCCCTATCTTGGATACC 108841 33 100.0 33 ................................. ATTGAATGAAATTAAAATAGAGTTGAATAAATT 108907 33 100.0 34 ................................. TAAAAAAGTATGTTGATATTTCCCCTGGTCATTC 108974 33 100.0 34 ................................. GTACATATTGTAACTTTACGGATGAAGAACGGGC 109041 33 100.0 35 ................................. CTCCAGTACATGCCTGGACATATGTGCCCTCAGTT 109109 33 100.0 35 ................................. AAGGAAAGTGGGGCCGCCGACATAATTAAGAAGCT 109177 33 100.0 35 ................................. TGGAGCAGTTCCCAGAGACCGGCACGTTTGACCGA 109245 33 100.0 34 ................................. TTTGCGATATCGCAACAGGAGGAAGGGAAGCATG 109312 33 100.0 34 ................................. GCTGCAGCCAAGTCCACAGAATCAGCAGCGTCCA 109379 33 100.0 34 ................................. TTATGGTTCATCGGCGCTTGAGTATGTGAAAGAA 109446 33 97.0 33 .........C....................... CCTACTCCAGCCTCATCCATGCAGATGACCTTT 109512 33 97.0 33 .........C....................... CTACCAGCGCATTGATGGTGGCTTCCTCTACAA 109578 33 97.0 33 .........C....................... CCGGTAAGGCTCCATCACAAGGTCTATCCCCTC 109644 33 97.0 35 .........C....................... GCATCATACCGCTTTCAAGCGACATCGAACCTTCC 109712 33 97.0 34 .........C....................... AGCTTTAAGATTCCCTCCTCTGGTTGGACTGAAT 109779 33 97.0 34 .........C....................... GTTGAAACAGCTTGAATACATACCTGTTGGGAAA 109846 33 97.0 34 .........C....................... AAAAGTAGGAATGTGCAAGTGCGTGGTTGGTCAT 109913 33 97.0 36 .........C....................... CCTGATTACTCCATATATCCGGATTGCGATTATGCC 109982 33 97.0 34 .........C....................... GCCACACACTGGCTGGAAATGCAAGGGTTGCCGA 110049 33 97.0 33 .........C....................... CACAATCGTCTGGTCATATGGGACTATAGGCAG 110115 33 97.0 33 .........C....................... GATGGCGGACACAGAAAGACTGATTCTTTACGC 110181 33 100.0 35 ................................. TAAGAAGAGGTGTAAAAACCCTAAGCCCATATCTC 110249 33 97.0 36 .........C....................... CATGGTTTTATACCCAGGATTCTGAACTTGAAGTTT 110318 33 97.0 34 .........C....................... CTTCCATTGGGGTGGGGGTACTGTTGATTTTCAT 110385 33 100.0 36 ................................. AGAATTACATTTGAAGCATATTGATACTGGCTATCG 110454 33 100.0 34 ................................. GCTTGTATATGCATATATCCCATCTTTCATCAGA 110521 33 100.0 33 ................................. CCGGATGCAATGTGGAAAGTGGCCAGTCGCAAA 110587 33 100.0 35 ................................. TATTGTTAGGGCCAGGAGCTCACCCTCTCGGATTC 110655 33 100.0 35 ................................. GGCAGATGGAAATCATGACTGGATTGTCAAAGTCG 110723 33 100.0 34 ................................. GTCCATACGCAGATAGGACTGGATGTAGCCACAT 110790 33 87.9 0 ..............A......A..T....C... | ========== ====== ====== ====== ================================= ==================================== ================== 37 33 98.6 34 GTCTCCGCCTTCGCGGGTGGAGTGGATTGAAAT # Left flank : GCTGGTATTAATTACATATGATGTGAACACGGAAACCGCTGCAGGCAAGGCCAGACTGAGAAAGGTTGCAAAGCAATGCGTCAATTATGGTACCCGCGTTCAGAATTCCGTATTTGAATGTATTCTGGATAATGCCCAGCTGATAAAGCTAAAGGCAATTTTGACAGATATCATTGATGAACAGACGGACAGCCTTAGATTTTATAACTTAGGGAATAAACATACTACAAAAGTGGACCATGTTGGTGTTAGTAAGGGAATTAATGTGGAGGAACCATTGATTTTCTGATATGATGTGCAGGAGTTGAAACGGTAATAGGTGTTCCGGTGCGAACCTGAAGCAAACATGGATTTCCAGGGGGATTCGCACCAGAAAAATTGTATAATGAGGATGGTATTGTGAGGATTTAGGCATGTTTTCCGGGATTTGGAGGGGGTGTTGTATGACTTGTTTGTTGGAATTTGATAAGAAATGATAGGAGTTGTTGTGTATTATTGCT # Right flank : TAGAACAGTACATAGCTGACCTTGCAGCATAGCGGAATAAAATTAATATATAAGAGAATAGTTATTTCAACTGTATTTTGTATACAGTGCACAGCGGATACTTCCGACTATAAATGCATAACAATAAGGTGGGGCAAGCCCCACCTCTGTTAATCTATAAAATGCTGCAAAAGAGTGCTGACAAAAACCCATATTTCAGCTGCCCCCCATTAGCCCTTCCACGCCCGAATTTCTCTAAGTCCAGGTACCAGCACTTTGGCGCTGGTTTCCAATATAATCCGTCCCTTTTCCGCAGTGGCGCCGGACGGATCTCCGCCGATTCCAATGGGTTTGCCGTCCGCTGTCTTCCAGTCCTCGGATACCCATCCAATGGATACATTCCCGTAAGGCTTCAGCGCTTGATTATCCTTAAATGCATGCGGGATGCCTGCTTCTGAAGTCTCCAGTTTTACCAGAGACGGGTCCACGGCCATGACCATGGAGGTTTCCATTTCGCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCCTTCGCGGGTGGAGTGGATTGAAAT # Alternate repeat : GTCTCCGCCCTCGCGGGTGGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //