Array 1 101276-102314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066802.1 Actinomyces weissii strain CCUG 61299 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 101276 36 100.0 36 .................................... GGGCCAGGCGTCTAGGAGGGCGGTCAGCGGTTCAGG 101348 36 100.0 35 .................................... CGCACAGATTGGTCTAGCGGTGTCGGTGCGGAGGT 101419 36 100.0 37 .................................... GGGTCTGGGGATTCTCGAGTGCGGACTTTTCTGTGCT 101492 36 100.0 34 .................................... GTGACTGACTGTCACTCGCAGACTGGCCACTAGT 101562 36 100.0 37 .................................... GCCCTCATCACCGAGACCTCCGGAGCCCGCACGCTCG 101635 36 97.2 35 .......C............................ GTGCTGGCTGCTGCCATGCTTGGTGTGGGTGTCGC 101706 36 100.0 37 .................................... CTGGGGTTTACCAGAGCCGTAGCGGGCGACTTCGTGA 101779 36 100.0 36 .................................... TCCTCCATGTTTCCGGTGCCCAGGGTGGAGCCGGTT 101851 36 100.0 35 .................................... GCGGTCACGCTCCAGGCGGCGCTGGCGGCCGAGGG 101922 36 100.0 35 .................................... TGCCTGGCAGTCGCTTAAAGAGTGGGCTCAGCCTT 101993 36 100.0 36 .................................... CACCACTCCGCGCGCACCATCGTCCTGGACCACCGG 102065 36 97.2 36 .............T...................... ATACACTGGCAAGGCGTTGAACGCCGCCCTGGACGC 102137 36 100.0 36 .................................... GACCGCCTCCGAGACCAGGTGGAGCGGGCCGTGGGC 102209 36 100.0 34 .................................... CGCAAGATCAGAGACAGAGTGAAGTCCGCCCGGA 102279 36 88.9 0 ...............................A.CAT | ========== ====== ====== ====== ==================================== ===================================== ================== 15 36 98.9 36 GTTGCAGTCCCTTCGGGGACTGCGCTTCATTGAGGG # Left flank : TATAAGGGGGTGACCGTACGCTGATGCGTGACGATGTGCGGCGGGCACTTGTTGCATACGACGTTCCGTCTGATCGGAGGCGGACACGAGTGGCCAAGAAGCTCTTGAACTACGGAGACCGTATCCAGTACTCGGTGTTTGTGGTGGATGCGGCCCCGGCGAAGATCATACGGATGCGCGACGAGCTGGATGCGTTGATCGACCCTGAGGAGGACTCGATCTTGATCTGTGACGTGGGGCTCTTGTCCTCGGTGGACGACAAGCGCTTCAGCTACGTAGGGCTGACCCGGACCATCACACCTGATGGGCCGCTTATCGCCTGACGCGAGCGCTGCGGTGGTGCCCGAAGTCCCGGGGAGCGCTTGCGTCCATCTTTCCTTGTGACTGAGCGGAAAACACGCAACAGTCTGTGCTGTCCAGCAAGATGGGATGCCTGCCAGGCTGGAGCGCTCGCAGGTAGGGCTCTAAGCGGCTCAGTTACGCGGTATTATCACGGGGCC # Right flank : TGGGCGCCCCTGCTCCCTACGCTCGCCGGACTCAGGTAGCGGCCTCAGCGCCCTAGGACCAGCTGCGCCGTCTGCTGGGGGTGGGAGTGCATCATCTGGTGTGAGGCCCCCGCAACCACGTGGTAGCTGCAGCGCCTGCCTGAGGCCGCCAGCCGCTTCAGCCAGGACACCGGCGTCAGGGCGTCCTTCTGCCCGCCCACCAGCACGGCCTCACAGTCCAGCTCCCCCAGGTGCTCAGCCAGCTGGTAGCGCAGGAGTGCGGGCAGGATCTCCGCCATGTACCAGGGGCCCGCCCGCAGCAAGGAGTATCCGGTGGCCAGCATCGAGCGCGGCGGCTCGTGCACCGCCGCCTGGCAGAACCGCCGCACCACCACGCCCAGCCCGCCCTCGGCGTCGTTGATAACCGGCGCCAGCAGCACCACCCGGTCGGCCAGTGACGGGTCCTGCCTGACCGCCTCCACCACCACCTGGGTGCCCATCGAGTGCCCCACCCACACGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCCCTTCGGGGACTGCGCTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 430476-431307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066802.1 Actinomyces weissii strain CCUG 61299 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 430476 37 97.3 35 ...................................G. CGGTGGGCTATTTTCTGGTGGGCTTAGGGCGCATC 430548 37 97.3 34 .......G............................. TACCCCATTAGCACGCCCAAGTAGAGCTCGTTGC 430619 37 100.0 35 ..................................... GCCATGATCACTTCTCCTTGTTCGTGATGTCGTTG 430691 37 97.3 35 .............T....................... CCCTTTTTGCCTGGGCAGACATATCCAGCCGATCC 430763 37 100.0 35 ..................................... TGCGTCCACGCCTCCAGGAAGACGCCTTCGTGCTC 430835 37 100.0 36 ..................................... CCACGAAGAGCCTGACCGGCCTCTTGTCCCCGACGA 430908 37 100.0 37 ..................................... CGACCAGGCTTCTGCCCGTGAAGGGAGACGGTGACCG 430982 37 100.0 35 ..................................... AACGCCCTGGTCGTCAACCATGTCGGTGCCGTATC 431054 37 100.0 36 ..................................... GATTCTTTTCTGGATTACCAGCTGGCGGAATCTAAC 431127 37 97.3 35 ..........G.......................... GCTCCTATTCTCTCTGCTTGTCAAGATGCACTTCT 431199 37 94.6 35 .........TG.......................... TGGAGGTAGGAAATTAGGTCAGAGAACCCCGACGC 431271 37 83.8 0 ........T....T...........A.......G.GG | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 97.3 35 GTCAGGAAGCACCACGCACCTGTAGGTGCATTAAGAC # Left flank : GTGGGCGAGGGTGGGGTGGGTGGCGGCGCGTTCGGGGGTGAGGCCTGCGGGCAGGTCCAGGACGTGGCCCCAGGCGGCGTGCACGCGCCGGGGGGTGAGCCGGGTGCCGGGTGGGGCGTCGAAGGAGATGTAGAGGCTGCTGGGCACCGTGCCCTCCTGGTGTGCCGCTGTGGGGAGCTGTGTGCGGGGTAGGGCTAATTGTGTACCGGGGGGCCGTTCTTCGCATGGGGGTGGGGAATGATGCTTCGGGGGCGACAGAGACTTTGCTGGGAGTTTGCTGTGTGTTTGCTGGTTGGGGTGTTTGGAGGGGGACTTTCTGGCTTGGTCTCGTTGGAAGTCGGTGGCTGGGGGTGGTTTTGGGGCGTCGGTGGCGCTTGGCTTGATTGGGCCGAAAAGTGGGTATAGTGGGGGTGTGCTGGCCGGTCCTGTGGGGTGCTTGCGGGGCCAGTGGCGCTCTGGGTCCTGGAAGTGGCGTGATTGCAAGGCTTCTGGGGGCCAGG # Right flank : GTCCTCTTCAGGTTTGATCGGCTCTGCCTAGGTGCTTCTGCATGTTTATTGCTGTCGCATGTCCGTTGGTCCTTCGTCTGCGGTTTCCCGGGCTGCGTCCGCGGACATGCTGTGCCACTATGTTTTGTCAGGAGCCGCAGTTCCTGACGGTCGCTTCACGGCTCTGGAAGCCGCTCCGCCCGCCCTCCCACCGTCGTCGAGGTCAGGTGACCCAGCCGTGCGCCCTCCCAGCAGCAGCACAACAGGTGCCCGCCGTCGCCGCGGATACCGTTTAGCAGCAGGCCCGGGCGTACACCTGGGCCAGCTGCTGCCTGCATACGCCCCGTTGGACCTGGCCCCGCAGCCTGCCGAGCTCTCCTGCCCGGCTGCTGACCGGCCAGCTTCCGGCAACCCGGCGCCCGCTAGTCACCGCCCCTCTCTGTTCGAGACCCTGACAAGTGTGGAGACCCTCACCCAGGCCTGGCAGACGGTACTGGCCCGTGACGCCCGCGACGGCACCC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCACGCACCTGTAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 434231-437521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066802.1 Actinomyces weissii strain CCUG 61299 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 434231 37 100.0 36 ..................................... AATGGGAGAGACTTTCTCCACTGTGCGAACTGTCAC 434304 37 100.0 34 ..................................... CTGGCTGGCCGTAAGGCCACCCTGGATAATACGC 434375 37 100.0 35 ..................................... TGACCGTCCATCGGCCGTTGTCGCTGACGACGACA 434447 37 100.0 34 ..................................... CTGGCTGGCCGTAAGGCCACCCTGGATAATACGC 434518 37 100.0 35 ..................................... AAGGCCAATTTGGCCTCCAACTTCTGTGCCTTCTC 434590 37 100.0 34 ..................................... AAGCAGGCGGCGAACCGCTCGTCCCCCTTGATGA 434661 37 100.0 36 ..................................... TTTTCTAATTATCTCTCATGTTTCACTCGCTGTCCT 434734 37 97.3 36 ............................T........ TAGAAGGGTTAGTGATCATCGATTCTTATGTATCGA 434807 37 100.0 36 ..................................... AATAGGCGATCCCCTAGGAACTCTCCTCGCAGTCCC 434880 37 100.0 35 ..................................... TTTGCTCTCCGAACTCTTCGGCAATCTTCTGTCGC 434952 37 100.0 37 ..................................... CGTGTCGCCGGGTTCGGGTGATTCGACCACATTGTCC 435026 37 100.0 37 ..................................... GGGCCAGAAGAGCCCCTAAGGGGGAAAGGAACACCAT 435100 37 100.0 35 ..................................... CAAGCTCCGATCCGAAGTTCGGGACCAGAAGGGCC 435172 37 100.0 37 ..................................... TCTTCTGTCTGGAAAACCCTAGCTCGGCTAGGTTCTC 435246 37 100.0 34 ..................................... CCAGGACGGCGTTGAGGTCCTTTATAAGACCGCT 435317 37 100.0 34 ..................................... CCAGGACGGCGTTGAGGTCCTTTATAAGACCGCT 435388 37 100.0 34 ..................................... TCCACCCGCCGGGACCGGGCGATGGGGCACGCCC 435459 37 100.0 35 ..................................... CGCTCCTACGCCCCTTTCTTGCCACCCCTATTCTT 435531 37 100.0 35 ..................................... GAGTACCAGTTCTATTGTCATATCTTCCGCCTCTC 435603 37 97.3 35 .....................T............... CTCAACTCCCGGACAGCAATGTAGATAAGCCATAA 435675 37 100.0 37 ..................................... ACCACAGGTAGGACGATAACGGCTGTTGCCAGAGCGG 435749 37 100.0 35 ..................................... CGCTCCTACGCCCCTTTCTTGCCACCCCTATTCTT 435821 37 100.0 37 ..................................... ACTTCTGGAAGTTCTCACAGGCCTCCCGGAAGGAGGC 435895 37 100.0 36 ..................................... TCCTTCCTAAGCGCCTTCTCGATGGTGTTTCGGAGT 435968 37 100.0 33 ..................................... GATGGCAAACTCCCTGGCTCCGGCCTCATAGGC 436038 37 100.0 34 ..................................... GACCGGTCAAGCGCCGCACTGATCACGGAGCTGT 436109 37 100.0 36 ..................................... CGGTGGATCGACCACTTCCCATTCTTCAGGTTGATC 436182 37 100.0 34 ..................................... AACGAGGCGATCACGCCTGCGCTGCCGGTGCTGT 436253 37 100.0 34 ..................................... ACCAAGGAGAAGCGCCTGGCGGTCCTTGAGGCGC 436324 37 97.3 34 .............................G....... CTTCTGGTGATCTTCTTCACTTAGCGCATATAAC 436395 37 100.0 36 ..................................... CTGACGCCTCGCACTCGACCTCGGTCGGACACGCAC 436468 37 100.0 35 ..................................... TTGGAAGAGGCCCTCGAGAAACATAGCTTCCCCTG 436540 37 100.0 34 ..................................... GCGTCATGCTTGGGGTCTGTACCTTCGACGACAA 436611 37 100.0 36 ..................................... ATGACTTTTCACGGGCATCACGTTCCTCGAGCAACC 436684 37 100.0 34 ..................................... TCATGATCTCCACCCCGTTCGCGGTGGCGGCCTC 436755 37 100.0 37 ..................................... ATACACCTGACCGCTTACCACAATCTCGATGACCCAA 436829 37 100.0 37 ..................................... AGCAGCTGGGCGACCCAAAGGTCTCTTTCGTCAGCCG 436903 37 100.0 36 ..................................... CATCTTGAATACCCTGGCCACCTCGGCCAGGGTCAG 436976 37 100.0 37 ..................................... GTGTCAGTAGACATTGCGAAGTCCTTTCTGTGGTTGG 437050 37 100.0 36 ..................................... GGCAGCCAGGCTGGCACACCGCGACTGGTCAGCTCG 437123 37 97.3 36 ...............A..................... ATGCGGCACATGATGTGCCCGCAGATGTCTTCGACA 437196 37 100.0 35 ..................................... TGGCTTTCGGGTCAGAAGAGTGCGGCTGCTAGCGT 437268 37 97.3 35 ..............T...................... AAAACGTTGAGCATTGTGGTTCCTTTCGTAGTGGG 437340 37 94.6 35 .G........G.......................... AAGCGGCTTGTTATCACAAACCCAATTTGCTACGA 437412 37 94.6 36 .........T.T......................... CTCCGGAGAGCCGTATGTAGTCGCTACTCTTGGGGT 437485 37 94.6 0 .................................T..T | ========== ====== ====== ====== ===================================== ===================================== ================== 46 37 99.4 35 GTCAGGAAGCACCACGCACCTGTAGGTGCATTAAGAC # Left flank : GCGTTGGAAGGGTGGGGGTACAGGCTGCAGGAGTCGGTTTTCCAGCTGCGTCTGGCTGAGGGCGAGCTGGAGCAGGTGCGGGCACGGGTCAAGGAGCTGATCGACGACGTGGACGACGTGGTCCACCTGTATCCCTTGTGCAGCGCCTGCGTGGGACGCTGCGAGGTGCACGGGACCGCACCGTCGCTTGACGATGCGGGACTGTACCGGGGCGTCTGGTAAGGCTAGGGGCGGCCCGTACTGCGGAGCGGCGACAGGGCCGATTGCTGGGAGTTTGCTGTGTGTTTGCTGGTTGGGGTGTTTGGAGGGGGACTTTTTGGCTTGGTCTCGTTGGAAGTCGGTGGCTGGGGGTGGTTTTGGGGTGTCGGTGGCGCTTGGCTTGATTGTGCCGAAAAGTGGGTATAGTGGGGGTGTGCTGGCCGGTCCTGTGGGGTGCTTGCGGGGCCAGTGGCGCTCTGGGTCCTGGAAGTGGCGTGATTGCAAGGCTTCTGGGGGCCAGG # Right flank : TCACAGGCGGGGAGGCTGGTCGTACCAGCAGTGGTCGTCAGGAATCGCCTCGCGGCTGTTGAGCAGCAAAAACGGGGGTGCGCCAATGGGTTGGCGCACCCCCGGAGGTGGGTAAGCGGGTGGGGCAGGCTAATCTGCGGACGTCGCCAAAGGAGGCAGGTCGTACTTACGAGAAAGCTGTTTCCCGTTCAGCTTGTGGTTCACCCTGTTTTCCTCCCGCTCCTTGAACCAGTTGATGATCGGAGACAGGTCGCCGTTCGCGGCCTCGCCGGCCCCAGGGTAGGACACGGTGCCAGAGCGCCACCCAAAAGCGGCCCGCTGGAAGGCACGCACCGGCAGAGACTTCTCAAAGTCAGAGGGCAGGTCAGAGAGCGTGCTCTCCAGCTCAGCGTCAAGGCTCTCACCATCCAGCCCCAGGCAAGAAGACAGGCTCTGGTAACCCTGGCCAATAGTCTTACTGCTACGGCGCACCACCCTGGTGGCCCGCACCTCGACGGCCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCACGCACCTGTAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 738244-736386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066802.1 Actinomyces weissii strain CCUG 61299 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 738243 28 100.0 33 ............................ CGTCAAGCCCTATTATGATTACCCTTGGGACTG 738182 28 100.0 33 ............................ CTGAACGCGATTTGGTGTCGGTGTCACTAGTGT 738121 28 100.0 33 ............................ TCAATATTTCCAATGTCGTCAGGATTTGACCAT 738060 28 100.0 33 ............................ TTATCCAAGCGGACAGTTGCTTGCGACCCTCTA 737999 28 100.0 33 ............................ TTGAAATTATTCGCCTTAGAGAACGGGATGTTG 737938 28 100.0 33 ............................ ATGACTGGCTCACCTTCCGCAACCTGGCGATAA 737877 28 100.0 33 ............................ CATCACACCGTTCACCTATCGCGACGGAATGAC 737816 28 100.0 33 ............................ GAATATTGAGGACCAAATGATTTACCGCAGAGA 737755 28 100.0 33 ............................ TCGGCCACTCTAGTTGAATGATAGACCCTTGGC 737694 28 100.0 33 ............................ GTATGCAATTAACCAATGGGTGAGGCACGGCAA 737633 28 100.0 33 ............................ GGTCCAAAATACGCTCTGCAAGTATGCGCGGCG 737572 28 100.0 33 ............................ TCTGGTTCCCGCCCGCGCCGTCACCGCCGGGGC 737511 28 100.0 33 ............................ CGAGGACTACGCTACCGGCGCGGCGGATAGTGT 737450 28 100.0 33 ............................ TGCGTTTAGTGAGGTGTTCTCTTGACAGTCAGT 737389 28 100.0 33 ............................ GTCCGCGTATTTGTTGGACCGTTAAAGAATTGA 737328 28 100.0 33 ............................ TCCAATGGGGGGCCGCCGATTAAATGCACAGAA 737267 28 100.0 33 ............................ CGCCCGCGCGAATCCCCCCTTCCCCGGGATTCG 737206 28 100.0 33 ............................ CATGGTCTGCGCCCGCAGGCGAATCCGGTTCCC 737145 28 100.0 33 ............................ CAATTTTCTTATTCAGGGTAGGCCTGTATTCCT 737084 28 100.0 33 ............................ GATTGGTGCCAGCGCGTCTACATCGATATTCGT 737023 28 100.0 33 ............................ CTGTTTAAGCGGGTTATTCCAAGACATTTCACG 736962 28 100.0 33 ............................ TACCCCAAACTTTATTGACCGATTTCCCTTAGG 736901 28 100.0 33 ............................ GGCGCGGGCAGGCTAACGCCGGAAAGTACGGGG 736840 28 100.0 33 ............................ CGCGCCTTCGTGCTTCCAGGCCCCAAATCGTGT 736779 28 100.0 33 ............................ CGTGATTCACGTACACACTGACGCCGGAGTAGT 736718 28 100.0 33 ............................ CCGCTAGCCCGTATCGCTTATTAATACGCTCGC 736657 28 100.0 33 ............................ CTGTTTTTAGGGCTTTGGTCCAGCGGAAATGAG 736596 28 100.0 33 ............................ CAACAAACACCAATGAAGGTAAGGGAAAACACA 736535 28 100.0 33 ............................ CCTGCATATTCGTAATCGTGCGGGCGATCGCAT 736474 28 100.0 33 ............................ GGGAATTATTGACCAGGACCTTGCAGGGCCAGT 736413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 33 GTCGACCCCGCACACGCGGGGATTAACC # Left flank : GGTAGTGGCTGGTGGCGCCAACTACGCTGACGAGGAGGCTGGCGGATGGTAGTTCTTGTGCTTTCTGCGGCGCCTGCCTCCTTGCGGGGAGCGCTGACCAGGTGGCTTATGGAGGTCTCCCCGGGAGTGTTCGTCGGGCACCTGTCAGCCCGGGTCCGTACACAGCTGTGGGACCTGGTGGGGGCCTATATTGGTGACGGGCGTGCGCTGCTGATCTGGTCCACGCGTGGCGAGCAGCGGTTCGCCGTGGAGTCTTTGGGGCACGAGAAGGAGCCAGTTGATATGGAGGGTTGTCTGGTGATGCGCACGCCGTACGCCCGCCTCACAGACGGTCAGTCCCCACGGGAGGTGGAGGCAGGGCGGACCGCTCCTGAATCCTGGTCCCTGGCGGCACGACGACGTCGGTACCGCAGCTACGCCGAGCGAGCCCTAGGTCAGCAGTGAAGGAAACTGCCTGAGGTATGATGTCCTCAACGTTGGGATTCCGCCGATCTCCAAGT # Right flank : ACCCTGGGCGGGCCGTCTGGACGGCGTATCCTATTAAGTCAGCCAAGTTCCCCCGAACCCGAAGAAAGGCAAGAGAAGTGGATAAAACAGCAGATGAGGAGTCCCTTGCCGAGCAGCTGGTCGGCTTCGCCTCAGCCCAACGGTTCGCCAACCTCGGCACTACCCGCAGCAGCTTCGAGCACGGAGAGCACGCCTGGGTGATCACCTGCATCCTGAGCCAGACAGCCGAAACTCATGTCACCGTCCCGCAAGACCTACTATCCCAAGCCCGAGCCCTGTACGTCCGCCGCCAGGACTTCGAGGCCCAAGGTGTTAACACCGCCTTGAGCCTCGCGACCACAGCCTGAGAGCCAGCGTCGCCCCCCGCACACGCGGGGATTAACCGTACTACCGCCTAGCGCTCATCGGCTCGGAAAATTCACCCCGGCAGGCGCAAAGAAATCACCCTCGCTCCAGGACACTTTCAAAACCACTCAAGTACCCCCACACCCACCACCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCACACGCGGGGATTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 5 1378226-1377523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066802.1 Actinomyces weissii strain CCUG 61299 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1378225 29 100.0 32 ............................. GAGTGTCCGCTCCAATAGTCAACTTATTGTGG 1378164 29 96.6 32 C............................ GGCTAGGCATGAGCATAAGAATAGCACCGCCT 1378103 29 100.0 33 ............................. TCCTCTCCACATGCCGGTTGTCGCAAAGCCCGA 1378041 29 100.0 32 ............................. TCACATGCACGATGTCGTCGCACATGCAGACG 1377980 29 100.0 33 ............................. TCCTCTCCACATGCCGGTTGTCGCAAAGCCCGA 1377918 29 100.0 32 ............................. TCACATGCACGATGTCGTCGCACATGCAGACG 1377857 29 100.0 33 ............................. GATAGCGACATTCGCGAGCGCACCAGACCCTGG 1377795 29 100.0 32 ............................. CCGATGTGGACGCCGTTCCGTCTCTAAGCTGT 1377734 29 96.6 32 T............................ CATTAGCATCGCCAGTGGGTCTTGGCGCCCTT 1377673 29 100.0 32 ............................. CGGGCGTGAGCCCTTCCTGGATCGCCTGGATC 1377612 29 96.6 32 A............................ GGACGGCTCCACCGTCTGGCGCGTCCGCTTCC 1377551 29 93.1 0 ...................C....G.... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GGTCGACCCCGCAGGCGCGGGGATTAACC # Left flank : GACGGCGCTGGTGGTCCTCCCACTGCCCCGGCAGCAGGTCCAGGGCGGCTGCGCTGCACCGCTGTGCGGCGGGCAGGTCAAAGAGCCGCTCCAGCACGGCGTGCACCAAGGTCCCCTTGTGGGTGGCCAGCGAGCCGGGCTCCGGCAGCCGGTCCACCGTGCGCAGGCGGAACAGCAGGGGACACTGCAGGAAGTCCTTGGCCCGGGAGGGGGACAGGGCCACTGTCCGGGCGCCGCCCTGGGGACGGGCCAGGGGGCCGGTGGGGCGCGGCGGGTTCTGCTGGGTCATGCCCTGACGCTACCGCCCACTCCTGGCACAGAGCCTACTCCTGCTCCACCGCCTGCCCTGGCGGGCTGCACAGCAGGGCGACGACGTCGTGGAGGCTCCTTGTCGCGCAGCCTGCCGCGCACCTCACCTGCTCGCGCGTCCTAGGTCAGCAGTGAAGGAAACTGCCTGAGGTATGATGTCCTCAACGTTGGGATTCCGCCGATCTACAAGC # Right flank : CCGGTCAGGGACTCTCGCTGTCACCACCAGTCCCGGCCTAGCCCTAGCCCGCTGCGCCCGTACAACCCCGGTGACCACAGCGTCATGGCCCCGCAGTACCTAGCTGCCGCGTCGTCCCGGCCCACGGGCGTCCGGCAGCCTACCGCCAAGTAGTCTCAGCCCATGACCACACCAGTGACTCCCGCCTCCCGCGAGCCTTGGACCCTGATGCGTGTAGGCGGCGCCCCCGTCGTCGTCGACCCCACCTCCCTGCTGCTGGGACTGCTGGTGGCCGCCTCCTGGTTCCCCGCCGTCAGCAGAGTGTTCACCTCCCCGGTCACGTTGCTGGGCGTGCTGGTCGGTGCCGCGGCCGGGGTGCTGCTCTCCGTGCTCCTGCACGAGCTGGCCCACGGCCTGACCGGCACCGTGCTGGGACGCAGGCCGGTGCGCTACGAGCTCATGCTCCTGGGCGGCCGCACCAGCTTCGGCCCGGCGCGTGACTGGGCCCCGTGGAAGGACGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGACCCCGCAGGCGCGGGGATTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 6 1607537-1606412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066802.1 Actinomyces weissii strain CCUG 61299 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1607536 37 100.0 35 ..................................... CCGTAAATAGCAGCCGCCACAGCGAGAATCGATAC 1607464 37 100.0 35 ..................................... CTTTTCTTAGGGGTGAAATCACCGTCCTTGACCGC 1607392 37 100.0 36 ..................................... TCGGGTCCGGGCAATGGGGAATCGCCATGAAGAGCC 1607319 37 100.0 36 ..................................... GAGAGGATCGTTAAGGTGAGGTGGTCCGTCAGCATT 1607246 37 100.0 34 ..................................... TTCATTATCTCCTCCAATGCTTTATCGAGTTCTT 1607175 37 100.0 36 ..................................... AGGATCAGCGAAACCGGACCTGGCGACTTCCTCAGC 1607102 37 100.0 34 ..................................... GGGTAGCCCAGAGCGTCCAGAACGTCGTTGAGGA 1607031 37 100.0 35 ..................................... GCGATAAGACCTAGTGTTACTGTACCGGCGCTATA 1606959 37 97.3 35 ...................................G. ACGAATGTGATCTCCACTTTTTGTTCCTCTCTGTA 1606887 37 100.0 38 ..................................... TTTCCGTCCTGATCCCGGATGAGGACACCGGGAGCGAG 1606812 37 100.0 36 ..................................... GCATCTGACGCCACGAGCGAAGCGCGATTTGACAAG 1606739 37 100.0 37 ..................................... CGCTAAACCCCGCCTTCTCAAGCTCGCTGGCCCATTC 1606665 37 97.3 36 .................G................... CATTCCTACTTTCCTTCCCGGATGGTCTCGAATAGG 1606592 37 100.0 35 ..................................... AAAGGTGTTCGCCCCTCCTCAGGCGGCTCTTTCCG 1606520 37 100.0 35 ..................................... CCCACGCCGAGACGGGGGTATCCATCTCCCAGTCT 1606448 37 91.9 0 ..........................C....G...C. | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 99.2 36 GTCAGGAAGCACCACGCACCTGTAGGTGCATTAAGAC # Left flank : GGACGTGCTGGGGGCGGCCCAGTCGGGGCGGACCAGCGGGCTGGACCTGCTGCGGGTGCGGCGTGACGCGGCGCTGATCGCCCGCGCCCGGCAGGAGGCCACCGAGGTGGTGTCCGCTGATCCGCTGCTGCAGGGGCACCGGGCGCTCGCGGCGGCCATTGCCTACCGGCTCGACGAGGAGTCCCAGGCCTTCCTGGAGCGGGTTTGAGGCGGGGGTGTGTGGCGGCCGGGGGCGCCCACGGTGCGGGCGGTGACAGGGCCGGTTGCTGGGAGTTTGCTGTGTGTTTGCTGGTTGGGGTGCTTGGAGGGGGACTTTTTGGCTTGGTCTCGTTGGAAGTCGGTGGCTGGGGGTGGTTTTGGGGTGTCGGTGGCGCTTGGCTTGATTGGGCCGAAAAGTGGGTATAGTGGGGGTGTGCTGGCCGGTCCTGTGGGGTGCTTGCGGGGCCTGTGGCGCTCTGGGTCCTGGAAGTGGCGTGATTGCAAGGATTCTGGGGGCCAGG # Right flank : ACTGGCAGAAAAGTTGGCACGGTGTGCCACTACGGGCCAGTTGTAATTCGTCTTGGTGAGGTGATTGCGGCGCTCGGGGCCTTGGTTTTCGCTTGATGGACGTTTATGGGTGTCCTTGTTCGTGAACGCGAGAGTGTGCCGCTGGGCGGCTGGGGGTGCCTCTACGTGGTGCGTCAAGCTGCGGCAGTTAGTTCGGGTGCTGGTTAAGGGGTGTGGAGGGTGTCGTCTGTGGTCATGGTGTGTGGCTGTGGTGCGGGGTGATCTGGGTGTGGTGGGGCGTGCCCGCCCCACCCCCCGACTGGTGCATTTCGGCGCGAGTGGTGCCGGAAAACCGCACCACTCGCGCCGAAATGCACAAGTGGAGGCGAGGGAGGTGTGCTCGCCGCGGATTGAGGGGCCGGACATGCGGGTGAGGGGTCGGGCCTGCGGGCTAGGGGTGCGGGCCTGGCGTAGGAGGCCGTCTGGGGGCCGCAGGTGGAAGACCCGGTCTGGGCTGGCCG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCACGCACCTGTAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 7 2526570-2525441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066802.1 Actinomyces weissii strain CCUG 61299 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2526569 28 100.0 33 ............................ CTCGTGCCCTGGCCATTCATGAGCAATATCAGA 2526508 28 100.0 33 ............................ AGGCGTAACCGTATGGTCAAATCCTGACGACAT 2526447 28 100.0 33 ............................ TTTTGCCGGAGCCTTGCGAGACCGTTCCCGCGC 2526386 28 100.0 33 ............................ TACGCTGAAAGCCTCTATTGTTATTAGCGATAA 2526325 28 100.0 33 ............................ TAGGTTACGCTAGAGGCGGTGCAACAGTAATCA 2526264 28 100.0 33 ............................ CCCCCTCTAAGTGCAAGGTAGCGGTCATATTGC 2526203 28 100.0 33 ............................ GTTCCAGGTCCCAGCTGGAATAGATAGGGATAG 2526142 28 100.0 33 ............................ TAACTTGCTGATTGTACCCCTCGAATATCTTGT 2526081 28 100.0 33 ............................ TCAATAATAAATGACGCATCAAAAGCAAGATTG 2526020 28 100.0 33 ............................ GGCTATTTTTCCGCGCACTTACTCCAAGTTTTC 2525959 28 100.0 33 ............................ TCATAACGTCCGCGCGGCGACGGCGCGGCGCGG 2525898 28 100.0 33 ............................ CGGCGCGTCACGTCGGGAAACTCGGCTCGCGCG 2525837 28 100.0 33 ............................ GGTGAGCCCGTTATTTTTGGTACCGACTCCCTG 2525776 28 100.0 33 ............................ GGTGAGCCCGTTATTTTTGGTACCGACTCCCTG 2525715 28 100.0 33 ............................ CAAGTCAGGGGCGGCCTGCGGGTTGGTTGCCAC 2525654 28 100.0 34 ............................ GCAGATCATCTGGAGCAGCAACTACCCGGTATCG 2525592 28 96.4 33 .............A.............. GGTCTTGCCCTCGACCAGCTTGATCGCCACGGC 2525531 28 96.4 33 .............A.............. TGACCACAGCCCAGGACATCGGGCCTCCTGGGA 2525470 28 96.4 0 ...........................C | GC [2525444] ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.4 33 GTTCGCCCCACGTGCGTGGGGGTAGAGG # Left flank : GTGCTGGGCCGGGAAGGTCGGGGCCGCGGGGAGCGGCAGGTGCTGCGTGCTGTACTGGTGCGTGGTGCCCTGCCTGCCAGGGAGGTCCCCTTGGCTGTGAGGGCGGGCGTCACCCAGGCGCGCGCCTGCGAGCCCCGTGTGATGTCCTCCTTGCCGCGCCTCATCAGGGTCATGACGGCGGTTTCCAGCACCTGGACGAGCCTGGTGCCCGTGCGCCTAGCCCAGGACCAGCTCCGTGCAGAGCTGGAGAGTCTGGCGGCCCGTCACCAAGTGCGTCTAGTAGATGCAGGGCTGCACCGGCACGCCTGTGCTGAGGTCGGGGCTGCCGCAGGTTGTGACAGCGATGCGAAGCACGTGACGCTACGCTTTGACACGGCGGTGGCTGGCCCGGTGGTGCTTAATGGTGTGATGATGTCCCCGCTTGGCGCATCCGGGTTGGCAGTGAACCCGAAACGCCGTTCCGCCCCGCGCGACCGTTGAAATACAGCGGTTGCTGAAGG # Right flank : CAGAAGCTCGCCGCGCTCCACAGCCGGAGACCGCTCTAGCCCTCAGCCAACGACAAGCCTTCTGGTAAACGGGCTCAACGCCGTCGGGACAGCACCGCCGCCGCCACCAGCAGACCGCCGATAGCCGCCACCAGCCACCAGGGCACCAGGCCCGCACGCGCCAGCACCAGGTCCTCTATCTGTGCCAGCCGCTGCGACGCCAGCAGCCCCCCAGCGAGTCCCTGCGGACCCACCAACACCATAAGCAGTCCCAGCGCCACACAGACCAGGCCGCCCAGCAGCTCTGTCCAGGTGGTGTGCCGCCCCAGCACCCGCACCGTCCGCGGCCGCAGCCACGCCCGCTGCGACAGCCCGGCCGACTCCCACAAAAGCGCCAGCACTCCCAAGGGCAGAGCCATACCGGTGGCGTACACCGCCATCATCCCGGCGGCCCTCACCGGCTCACCCCCCAGCCCCGCCAGCACCAGGACCGCCCCCAGGATCGGGCCGGAGCAGCCCAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCCCACGTGCGTGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //