Array 1 502044-500753 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235959.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 502043 37 100.0 34 ..................................... TATAAGTTGTACGAACAGCAAACGCCAGCGTATT 501972 37 100.0 39 ..................................... CGATGCGGGTGCGCCCGAAAGTCCCTGTGACGCGCCGAG 501896 37 100.0 37 ..................................... GATAATCAAATTGATAATCAAATTAGGCTTAAGTACA 501822 37 100.0 37 ..................................... GGGAAAAACCTCGATCGAAGCCATTCCCGATGGCTCG 501748 37 100.0 35 ..................................... AGGATCAATGGAGCGCGGTATTTTTTTGGGTCATA 501676 37 100.0 37 ..................................... AAGTCCTTTTTCGCGAATCAACGCTTTTGGGGCTTCC 501602 37 100.0 36 ..................................... AGCTTTGGATCGACCAAACAGGGGACGATCTCCCCA 501529 37 100.0 34 ..................................... TCATCATCAAGCTCGATATTTTTGTCGAACTCAA 501458 37 100.0 43 ..................................... AACGGGCGATCGCTGTGACTGGAACAGTTTCGCCAGAGCGAGA 501378 37 100.0 44 ..................................... TGACTTCTTTGACGCGCAAACGACGATCGACGAAGTCATCGGAT 501297 37 100.0 37 ..................................... GATGGCTTTCATCGTCAGCGAGTGGGGAAAGAGTCGA 501223 37 100.0 36 ..................................... CGAGAGGGCTGGGGCGATGACGAAATTGCCCGAGTT 501150 37 100.0 37 ..................................... GAGGCGAGATTTCCCCGCACCAATATCGCCGCCCTCG 501076 37 100.0 33 ..................................... TAACCCCGCTTTTGCTTTGGCGCTGTTGCGTTC 501006 37 100.0 36 ..................................... TGCCTGCTTCGCTGTCGCTCCTCTGCGGCGGCGGCG 500933 37 100.0 36 ..................................... TCAAAGTCCATTCTCCCGGCTCGGTCGGTGGTTGTA 500860 37 100.0 34 ..................................... TGATTGAAATTTTAGGTTCCCGCTCAATCGCCTC 500789 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 18 37 100.0 37 GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Left flank : CTTTCAGGAGTTTTCTGCACCACCAAGATGCAAGTTCTTATGCGGACGCGACAGAAATTGATTATTTCATCACGAATGAAGACTCCGAAAAAGTGACTGCCGAATGGGTCGTGAACACTTACTCAGGGCGAAACTGGGTAGAAGTCTTCTATCGGGAAGCCAAAGGATGGTTGGGTTGGAGGGAATGCCAGGCGAGAGGTTTGAAGAGTTTACAGCGGCATTTAATTTTGGTATTTTGTGCCTACACTTTTATCCTTTGGCATAAGTTGACGGGCGGTTTACGAAGGAAGTGGGCGAACCAACCTTTGGAAACTTTTGTAGATGCTTTAGAGGCTTTTCGGACAGCCATGTCTTTTCGTTTTGTGGCATGGCTGAACGAGAATCGAGACCTGTTTGCCGCTCACAAAGCGCGTTTTGGCTTGGTTTGGGCTTGAAATTTGTTTAAGTACCGCTAGGGATTGAAACACTGAGTTCGGCGATCGCCCCTCCGAGCGGTGAAT # Right flank : GTCGTCTTCCCGGTTCCGGCGTATCCCCTTAGTGGTGCAGAAAACTCAGAAGGGTCATAGGGATTGACAAAAAGCAGCCGTTCTGGAGAGAAGAGAAAATCAAGCGGTAGAAACCCGAGCGAACTCAAGGCGGAGTTGCAGATGTCGTCGCTTGCGCCTCGAGGCACAAGCCGTAGGAGGATTGCACCTGGGTAGAGGTGTTAAGAGAGGATAGCCCAAGCCGAGATAAAGGCGACGCTGAATCTCGCGCAACCCCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGTTTGCCATCTGAGTTATGTTTTTTTCGCTGGCTTTCCCCGAGTAATCCTCCCAAATAGTGTCTAAACCCCTTTTTTGTTCTTGGGTTTTGAAGTCGGGGTCGAAACGCTTGCACCACTTCTCAAAGCAGGGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 506380-503661 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235959.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 506379 37 100.0 36 ..................................... AAGTGCGACTGGACTAGTAAAGGACTCGAAAGCATC 506306 37 100.0 37 ..................................... TCTCGACGCTGTTTCTTGCCGCGTTCGCGGGTGTATT 506232 37 100.0 35 ..................................... TCCAAATGCCTCTTGGAAGGATGCGAACCGGGCGA 506160 37 100.0 34 ..................................... CGATTTCAGGATCGAGCCGAGAATCTTCCTCCCA 506089 37 100.0 35 ..................................... TGCCAACTTTATTTCCGTTCGGAAGTCGATCGAAC 506017 37 100.0 36 ..................................... TTATGAGTTACTCGCGATTGATATCGATGAGGGCAA 505944 37 100.0 32 ..................................... CGAAGCCAAGGCTTGCGAGGAAAACCGCCCGC 505875 37 100.0 34 ..................................... GATAGCGTCGTCTACCGCGCCAACTCGGTGCTGT 505804 37 100.0 34 ..................................... GGCGGTTGGTGCGTCATCGTCGAGGCGATCTAAT 505733 37 100.0 37 ..................................... GAGATTCCCCCGATACAAGCCGAACCCGTCGCGCCAG 505659 37 100.0 34 ..................................... ACCATCGCTTCAGGGATCGGAGGGAACTGGGGGA 505588 37 100.0 35 ..................................... GCATCTTTGAGTGAGTCAATCAGTTTCATCTTTCT 505516 37 100.0 34 ..................................... CGACTGCGCCACCCATCCCCAGGAGGTCGCTGCT 505445 37 100.0 36 ..................................... ACGAATGGCTCGATCGTCCCGCCTGCAACCATGCAG 505372 37 100.0 36 ..................................... CTAAAAACTCAAACAACGGAGCAAGCTGAAGGTTCG 505299 37 100.0 36 ..................................... CTGACAACCCCTTACAAACCTATACACTCGTTGATG 505226 37 100.0 34 ..................................... GCAACGCTAAGCGCGATCGCTGTGGTTTGCCCCC 505155 37 100.0 34 ..................................... CATTTTTTTCGCCTAGTTGAAAATTGCGTTAATC 505084 37 100.0 37 ..................................... ACCTCTAACACTCCATTTCAGCTCACGCGAACATATC 505010 37 100.0 41 ..................................... TTGGCTCCCATCCTTAGTTCCTCCCTGAATTTGTCGAACAA 504932 37 100.0 38 ..................................... TACTTCCAACCGTTTCAATCGAGCGATCGCGTTTTCCA 504857 37 100.0 34 ..................................... TGATGGAAGCAAACGGTAAGCCTCCCTTGCATGA 504786 37 100.0 38 ..................................... TTGTACTCAGCCTTAGTACAGCGAGACCCATCGGGATG 504711 37 100.0 37 ..................................... GCCTATATTGACGTCTCCAATTGTTGGTAAATTGAAA 504637 37 100.0 43 ..................................... CTTTCCACTGTTTGGTGGATTTGCCACGTCGCTTTCGTCCAAG 504557 37 100.0 34 ..................................... TTTTGTTGTTCAACTTCTCTCACGACGATCTCTT 504486 37 100.0 35 ..................................... ACGCCGTATTTGTCGCTCACGCTCGCACGATGACC 504414 37 100.0 34 ..................................... ACCTCAATTTGAGCGCCAGTTTTGTAAACCGCCG 504343 37 100.0 36 ..................................... TCGATCGCACCCTCAATTCCAAGATCGCCTTCGCGA 504270 37 100.0 33 ..................................... ACAGATTGCGATCGCCCAGAGCGGAATCCAAGA 504200 37 100.0 34 ..................................... CAGTTCGCTAATGCCCCCACCTAGTCCGAAGATT 504129 37 100.0 33 ..................................... TTTCGACTCCTGCAGGCTCGACAGTCGAATTCG 504059 37 100.0 40 ..................................... TTTGAGGGGCTAAGCGACGAGGACAAGACGGCGTGGCGAA 503982 37 100.0 34 ..................................... TTTGTCGGGTTGGTGCTTGCTGTTGGCTTTGCTT 503911 37 100.0 35 ..................................... CAGCAAGTCGCAAAGTCACCTCAAGCGAGATAAAG 503839 37 100.0 34 ..................................... GGGAAAGATACCTTTTACAAGTGGAAACGGCATT 503768 37 100.0 34 ..................................... GTGGTTAGTCATTCAGAATCAATACCAGAATCCG 503697 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 38 37 100.0 36 GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Left flank : CCTTCTAGCGGGACTTAAACGGTAAAAAAGGTAAAATAAAAGCAAAACCCTTGACTGACAAGGATTTAAGGTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCGAGCCATGTGACTGCGCCCCTGACAATTTCGGTGGCCTAGATAGGGTAGCCAGTGACTTAGGCAGGCACTTCCCGATTGCAAGATGGCGGCTACCACTTCCGAGACTCCTCGTAAATGTCGTTGGTCTTTGGGCTTAACCCATTGACTTAGCTGGTCTTCAAGTTGACGATAGAGATGAGGGGTCATGATGCTGATGTGCTAGTTGAGGAACTCGAACATCGCATCTGACCCCTCTTTTTGTCTACCCCCTTTTTCTCAAATCCACTCCCTCTCTCACTTTCAGGAGTTTTCTGCACCACCAAGGGCGTATCCCTCAAGC # Right flank : TTTTAGGATTGCCATCGCCAGCCGACGCCAACTAGCGGTACTTAAACAAATTTCAAGCCCAAACCAAGCCAAAACGCGCTTTGTGAGCGGCAAACAGGTCTCGATTCTCGTTCAGCCATGCCACAAAACGAAAAGACATGGCTGTCCGAAAAGCCTCTAAAGCATCTACAAAAGTTTCCAAAGGTTGGTTCGCCCACTTCCTTCGTAAACCGCCCGTCAACTTATGCCAAAGGATAAAAGTGTAGGCACAAAATACCAAAATTAAATGCCGCTGTAAACTCTTCAAACCTCTCGCCTGGCATTCCCTCCAACCCAACCATCCTTTGGCTTCCCGATAGAAGACTTCTACCCAGTTTCGCCCTGAGTAAGTGTTCACGACCCATTCGGCAGTCACTTTTTCGGAGTCTTCATTCGTGATGAAATAATCAATTTCTGTCGCGTCCGCATAAGAACTTGCATTCATGACGATAGCAAAGGTTCTTTCTCCTTGTAGACGTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 508953-506860 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235959.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 508952 37 100.0 37 ..................................... ACAGTAGTTTCGGGGTATTTTGCTTATTCTGCTTTTT 508878 37 100.0 41 ..................................... AACACAATTCACAAATACTCTCTTAAAAATTAATCCCGAGA 508800 37 100.0 36 ..................................... CCCTATAAATCCCAACGGGACAACGCCATCAATCCC 508727 37 100.0 36 ..................................... TTGTCGTCCACGACGACGCGAAACTCTCCAAACCGC 508654 37 100.0 37 ..................................... GCGCCCATTATCACGCCGTAGTGACGGAATTCACCCA 508580 37 100.0 36 ..................................... CAGTTTGCGATGTCGCGGCTCCTGGGTGACTTGCAG 508507 37 100.0 36 ..................................... CCATTCTCTGGTGACCTCGCCGCTTCCGCTCCGAAC 508434 37 100.0 35 ..................................... ATCATCTCTACTTGGAGGCGGTCGCCGCCTGCCAC 508362 37 100.0 35 ..................................... GATAGATTTTCGGGTCATTGAGTAGGGTTGCGACG 508290 37 100.0 34 ..................................... TACACACATTTCAAAAGACTTAGATTCTTGGACA 508219 37 100.0 38 ..................................... GATTAATGTAGCGAACATGATTTGTAGCGAGTAAATGT 508144 37 100.0 37 ..................................... TACGCCTAATCCCGCGACGATCGCCTCGAGATTCTCG 508070 37 100.0 40 ..................................... GTCGTTTTCGCGGCATCGGTAGTCTCAATGTACGGGGAAA 507993 37 100.0 34 ..................................... CAAAACAGAACATGATAAAGCAGATTTTGCTGAG 507922 37 100.0 39 ..................................... TCAGAAATCTGCCAAACCTCCCTAGTTAATGACCCGAAA 507846 37 100.0 35 ..................................... CTTCTCGATAACCCGGAACGGCTCGGACCGATAGT 507774 37 100.0 35 ..................................... ATCGACACCGCCGTCAATACTGGTGCAGCGTTCGA 507702 37 100.0 36 ..................................... GTTCCGCGAGGCGATGCAACAAGAGCTGATCGCAAT 507629 37 100.0 41 ..................................... TTACAACGCAGACGACGTAAGGGTTGTAAGACTTTCTAGCG 507551 37 100.0 37 ..................................... ATCGACAACTGCAACGGAAGTTGGCTCGTCAGAAAAA 507477 37 100.0 35 ..................................... TTTGACAAATTGCCAGACGCTGACGCCCAAATAGA 507405 37 100.0 34 ..................................... CGGGTTGTAAGAATGCGATCGCGCCATGTCTAGC 507334 37 100.0 38 ..................................... GAATGGCTCGATGGAATCAACCGCACGATTGTCGCCCA 507259 37 100.0 34 ..................................... CGAGATTCTCGATCGGTTGGCGAACCACGATCCG 507188 37 100.0 35 ..................................... TTTGAGATTTTTAATAGCATTGACCGCCGCGATGC 507116 37 100.0 34 ..................................... CGGGTTAGCTGCCTTGACGAGATGCCACTCAACG 507045 37 100.0 33 ..................................... GGAAAATCACACATCGCCGCCCGCCTCGTGGCA 506975 37 100.0 40 ..................................... AAGGTTCCAAAACCGACCGCCAGCGATGCCCCGATCTCAG 506898 37 94.6 0 ..............................C.T.... | GC [506870] ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 99.8 36 GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Left flank : CGCTAGAGGTAACAGGCGATCGGCCGTAGCTTGCAGGAGGCTGTTTCCGCTTCCGTCGAGGCAGAGGAACTGTTTGGGGCGTCGAATACGACTGAGGGGCCAGAAGCGTTCCCCTTTTCCCCCCGCGAGGATGACGGGAATAAAGACCATAGTGAACCTCGATGTGTTTCTGGTAATGTTGTTTGCGTTGCCCCCATTTTGGCATCGCCCCGCCCGAGATACCGTAAGGAGGAGTGAGAAGAGCGTTTTTGCGCGAATGGGTAGGTGTTTGAGAAGAGGATGTGCGGTTAGAGAAGTGAAAGGCTTACAGCGTCTAGGTTTGAGCTTCTAAAGAGTCGGAGGCGATTCGCGCAATCTTTGAAAGCCTTATCTGGTATGTGTTTGAGAGATTTAGGAAGAAGTGCAATATGGCATTTTTGTCGAGTTTCATGGTAGGATGGCAGCGATCCGCGCAACTGAACCTTGAAAACCAAATAGAATCAAGGTTTCAGAGGTAGGCC # Right flank : GGTAAAAAAGGTAAAATAAAAGCAAAACCCTTGACTGACAAGGATTTAAGGTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCGAGCCATGTGACTGCGCCCCTGACAATTTCGGTGGCCTAGATAGGGTAGCCAGTGACTTAGGCAGGCACTTCCCGATTGCAAGATGGCGGCTACCACTTCCGAGACTCCTCGTAAATGTCGTTGGTCTTTGGGCTTAACCCATTGACTTAGCTGGTCTTCAAGTTGACGATAGAGATGAGGGGTCATGATGCTGATGTGCTAGTTGAGGAACTCGAACATCGCATCTGACCCCTCTTTTTGTCTACCCCCTTTTTCTCAAATCCACTCCCTCTCTCACTTTCAGGAGTTTTCTGCACCACCAAGGGCGTATCCCTCAAGCGTTGAAAAACCCAAAAATCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 623686-624320 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235959.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 623686 37 100.0 35 ..................................... TTAAGCCGATCTCTGCCTTGTAACTCGGCTCCAGT 623758 37 100.0 38 ..................................... GGAACTCAGAGGATAAGAGTGTATCCGTCACAGTCTAC 623833 37 100.0 39 ..................................... CCAAGAAAATATACGGTTCCTGGTTCGATTGTTGGTTTT 623909 37 100.0 34 ..................................... TGTTACCACCGTTCTTCGCAACACGACACCCCAG 623980 37 100.0 35 ..................................... CCCTGCATCCCGTAACATTGCTAACTGCATTTCGG 624052 37 100.0 43 ..................................... TTGAAATCTACCTCTTTCGCCGTTGTCTCGTCAGTATGTTCGA 624132 37 100.0 46 ..................................... TTGCCAGTCGATACTGCGTTGGACTCGCTCGCGCCTCGTTTTCTCT 624215 37 100.0 32 ..................................... GGGAGTGCGAAATTGCGGGCTGGTGGCGGGGA 624284 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 9 37 100.0 38 GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGTTTGAAGAGTTTACAGCGGCATTTAATTTTGGTATTTTGTGCCTACACTTTTTATCCTTTGGCATAAGTTGACGGGCGGTTTACGAAGGAAGTGGGCGAACCAACCTTTGGAAACTTTTGTAGATGCTTTAGAGGCTTTTCGGACAGCCATGTCTTTTCGTTTTGTGGCATGGCTGAACGAGAATCGAGACCTGTTTGCCGCTCACAAAGCGCGTTTTGGCTTGGTTTGGGCTTGAAATTTGTTTAAGTACCGCTAGGGATTGAAACAGTAAAGACATTGCGTATACCGGGTGCATCTCAAAAATGCAAATTTATCAGATCGGAGTCTCTGCACTGAATCGATCTGTTTTTGGGTTTCGCGATCGCTACCCCCCTGGACGGCAGCGTTGCCGAAGTCCAACCTACCCCAGACTCATATTTTTACAAAAGTGAGATACACCCGCGTATACCTTTGTAAATGTTCGTTCAT # Right flank : CGGCTGCCTATAGCTCCTATCGGTACTTAAACAAATTTCAAGCCCAAACCAAGCCAAAACGCGCTTTGTGAGCGGCAAACAGGTCTCGATTCTCGTTCAGCCATGCCACAAAACGAAAAGACATGGCTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTTACTTAATAAGTTTTTCTTATCACCTTGTTTTGCGAAGACCCTCCATGAGGACGATTCCCGGTCGATACCCTCTCTTTAAACTCCGGTCAATTAATTCTAAGGCGATTTCGGGTTTCTTTTTGAAAGAGGGATCTTTCTTGCCTGAGGGTAAGGAACTGGCTGGCTGATAGATTTCTACATCCAGAGGCAAATTTTTTTTTGCCATCATAGAGATGGGTCGTTACCGCCACGATTCCGTTGTCGAGCTTGCCGATTTCTCCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 5 625280-626045 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235959.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 625280 37 100.0 37 ..................................... TCCTGCAATTCAATTAGACATTTCTTCGCAATCTCTA 625354 37 100.0 42 ..................................... TCATTAACTTATAAAAGCCACAAGCCTCCAGATATATCCAAA 625433 37 100.0 37 ..................................... CTGTGGATATAGGTGTCTATTTCGCATTTTTCCCCCT 625507 37 100.0 37 ..................................... TGTTGCAGGGAACCCCGCAGGTTCGATCGTCGAACTC 625581 37 100.0 36 ..................................... GATGAGTTCCCGCAACACCGACAACACTGGCGTCAC 625654 37 100.0 36 ..................................... GCGATCGCCCCCGAGGACGACGATATAGACTGGGGA 625727 37 100.0 34 ..................................... TTCTGCGATTTTCTTCTTATTGCTTTGGTATGAT 625798 37 100.0 33 ..................................... GCCTTGCATCGGAATACGCTTGCCATGTATCTG 625868 37 100.0 35 ..................................... AGGATTTTGCCCAATCCACCGAACGCGACGGATTT 625940 37 100.0 32 ..................................... CTGCCTCCCATTCTTGAAAGTCTTGGAGTTCA 626009 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 100.0 36 GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Left flank : ACCGCCACGATTCCGTTGTCGAGCTTGCCGATTTCTCCGATGTACTGTCTTCCCACACCTGCGGTGAAGTTGCCGCTTTTTCGATGTCCTGTATCATCGAGCAGCAAGGCAAATCCCCGACCCACTCGGGTTTGATGGCAGGAGTCCACCACCTTTAAACGACGTTCGTTAATACGCTTCTCCTCCCAAGGGGATTCCGTTATAAAATGATGTAAGCGGTTGTAAACCACTCCCACCGAGTCGTTTGCCATCTGAGTTATGTTTTTTCGCTGGCTTTCCCCGAGTAATCCTCCCAAATAGTGTCTAAACCCCTTTTTTTGTGCTTGGGTTTTGAAGTCGGGGTCGAAACGCTTGCACCACTTCTCAAAGCAGGGTGGCATAGCGGCTGGGGTGGTCTCTCTCATGGGGACACTCTCCACCTTAAATCCTTGTCAGTCAAGGGTTTTGCTTTTATTTTACCTTTTTTACCGTTTAAGTCCCGCTATGACTACCACGATCAG # Right flank : CTGCGTCTCGTCCCATGGCGTCGTCGTTCGCGTCCGCTGCGTTGAAAAACCAAAATAATGATTCTAAATCATTTTCAAAATTTCAGATATAGAAAATTTCGTAAATTTAGTATTTTATTTTGTGAGGTTTGAGCTTTTCTACAAATTAAGTAGAATTTTGAAGGATAAAAAATATCATTTCGGCTTAAAAATAGTGAATGCAATAGAAGTTTTTTGCTAATACGATAAATATATTGAGGCTTTCAATAATTCCCAAAAATATTATTGACTGTATTGCGATCAAATTATCAGAATTGTGAAAACCTCAAAGATATCAAATATGTTTTTTTGTGAAAGCTTTAAAATCTTTAATAGAAATAAAAAATATTGTTTCATGGTCAACAGAATCGTAAATTTATACTTTTAAAATGTCAACTGTGACATCCGTTCGCAACTCAAGCAATAGCATTCGTTAGCTCGAAAATCGTACTGCGATCGGGATTTAGTGTAGACTGTAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 84865-83418 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235962.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 84864 37 100.0 34 ..................................... CTATGCTAGGGCATGGCAAAAAGGGGATATTCCT 84793 37 100.0 40 ..................................... GTTTAATTCCGCCGGAATTCAGTAAGCGAGTCACGATCGA 84716 37 100.0 33 ..................................... CGATCGTTTCTCTTTTAATTCCTGAAGAATGCT 84646 37 100.0 39 ..................................... AAAGCGAAAGACGTAAAGGGGCAGGTGAATCACTGCAAA 84570 37 100.0 38 ..................................... TGCGTGTCTATTACAATCTGGCTGCCCCCCGGATCTTT 84495 37 100.0 34 ..................................... ATAGATCGAGGTAGAACTTAACGACCTCTTGTCG 84424 37 100.0 34 ..................................... CGCAACTCCTCGGGAACGAAGAAGCGCCACAAAG 84353 37 100.0 41 ..................................... CGCCTTTAGCCTCAATCGAGAGGGATTGTAACATCTGCAAG 84275 37 100.0 35 ..................................... CTCGCCGAGGGTATGTCTTATCGCGACTTTGAGGC 84203 37 100.0 35 ..................................... ATAATCAACATCACACTCCCTACTGTGCGCGTAAA 84131 37 100.0 35 ..................................... TTTGCCCGTAGGAGGGGAAGCAGGCACTTGAAAAA 84059 37 100.0 39 ..................................... GCCAACGTTGACCATTTACAAGTCGAAAACGCTGGCGAG 83983 37 100.0 38 ..................................... AAAATCAGCAGGAAATCCCCTAGGTTCTTCGCCACCAC 83908 37 100.0 39 ..................................... GTCAATAAGGGGTTTGTGAACCCCGCGAAAACCTCGAAG 83832 37 100.0 35 ..................................... CTCGCGATGGATCTAATTGGAGAAACTCAAGAGGA 83760 37 100.0 41 ..................................... TTTGACGAATTACCGGACGTTGACGCCCAGATAGAAGGCGT 83682 37 100.0 35 ..................................... GGACTAAATCCCTGGTCGGTCGCGATCGACTCGTC 83610 37 100.0 42 ..................................... CAACCGTTTCAAGTAACCTGTAGGCGGTTTGGATCGACTGAT 83531 37 100.0 41 ..................................... ATGGATAAAAACGTTCGAGATCGAGTTGAGATCGACGCCAG 83453 36 70.3 0 ...............CGGGA...A..C..-.AA...A | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 98.5 37 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : TGTTCCTCTTTGCCGAACATCCTAGCGGGACTTAAACGGTAAAAAAGGTAAAATAAAAGCAAAACCCTTGACTGACAAGGATTTAAGGTGGAGAGTGTCCCCATGAGAGAGACCACCCCAGCCGCTATGCCACCCTGCTTTGAGAAGTGGTGCAAGCGTTTCGACCCCGACTTCAAAACCCAAGCACAAAAAAAGGGGTTTAGACACTATTTGGGAGGATTACTCGGGGAAAGCCAGCGAAAAAACATAACTCAGATGGCAAACGACTCGGTGGGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGGGTGGCATAGCGGCTGGGGTGGTCTCTCTCATGGGGACACTCTCCACCTTAAATCCTTGTCAGTCAAGGGTTTTGCTTTTATTTTACCTTTTTTACCGTTTAAGTCCCGTTAGAAA # Right flank : GGTAAAATAAAAGCAAAACCCTTGACTGACAAGGATTTAAGGTGGAGAGTGTCCCCATGAGAGAGACCACCCCAGCCGCTATGCCACCCTGCTTTGAGAAGTGGTGCAAGCGTTTCGACCCCGACTTCAAAACCCAAGCACAAAAAAAGGGGTTTAGACACTATTTGGGAGGATTACTCGGGGAAAGCCAGCGAAAAAACAATAACTCAGATGGCAAACGACTCGGTGGGAGTGGTTTACAACCGCTTACATCATTTTATAACGGAATCCCCTTGGGAGGAGAAGCGTATTAACGAACGTCGTTTAAAGGTGGTGGACTCCTGCCATCAAACCCGAGTGGGTCGGGGATTTGCCTTGCTGCTCGATGATACAGGACATCGAAAAAGCGGCAACTTCACCGCAGGTGTGGGAAGACAGTACATCGGAGAAATCGGCAAGCTCGACAACGGAATCGTGGCGGTAACGACCCATCTCTATGATGGCAAAAAAATTTGCCTCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 396854-395074 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 396853 37 100.0 34 ..................................... GTCCCGACACTATCGGGAGGCTCTATCAACCTGC 396782 37 100.0 40 ..................................... GCTGAAGCTATCACCAAATCATCATCCGGCGGTGGCAAAG 396705 37 100.0 32 ..................................... CTTAAAGCTTTTCGGAACTTCGACCGGAAAAT 396636 37 100.0 35 ..................................... CCTTGCGCGTGGACGCCGTGAGCTTCCAGTTCGGC 396564 37 100.0 38 ..................................... TGGGCGAACGCTGGAGCCGGGTCGCGATTCTCGACTAA 396489 37 100.0 35 ..................................... GCGGTAGTTCTCCAAGGGCGATCGCTGTGACTGGA 396417 37 100.0 35 ..................................... CGACATGGTAGTTAACGGCGAGCATGAAGAGTATG 396345 37 100.0 37 ..................................... ATCGCCGTCAAACTCGATGTAACTGCACTTCTCCAGT 396271 37 100.0 34 ..................................... TTCTGAAAATGCCGAGAATTCAAAAAGATTCCGG 396200 37 100.0 34 ..................................... GCTCCTTAACTACACCACCCTGACCCGGAAAGCG 396129 37 100.0 34 ..................................... TTGGTTGTCTTTTTGTACGTTACCGTGCTATAAT 396058 37 100.0 35 ..................................... TCATGGTTCTAACTAACTCCTTAGTAAACGTTTTT 395986 37 100.0 39 ..................................... CTTACCTACCGCCGCATTTGCCGCCGAATCATCTGCCAA 395910 37 100.0 35 ..................................... GCTTATCTCCTGAGATGCGCCAGTTGATTTCGCTA 395838 37 100.0 36 ..................................... TAAGAATCACCGGATAAAAGGTAGATTTCTAACATT 395765 37 100.0 35 ..................................... GCAATTTTACCAACTAGCGAGGATTTGCCACTCCT 395693 37 100.0 35 ..................................... TCTGGCGTGAGCTGTTTTAGCAAAGTCGTTGCACC 395621 37 100.0 39 ..................................... GTTTTTTTGACGATTTGCAAGCTTGAAAAGATTTCTCGA 395545 37 100.0 35 ..................................... TCTGATATCCGGTGACGGCACGGCGCAACAGAGAC 395473 37 100.0 34 ..................................... AAGGGGGTGGAGAATACAAACTCGAGAGTGGGGA 395402 37 100.0 36 ..................................... TGTAACGCCGCTGCGATCGCCGCCTTCAACCGCGAT 395329 37 100.0 34 ..................................... GTAACTTCAAGGATGGGAACTCCTAATATTGATA 395258 37 100.0 38 ..................................... GTAAGCAGCGAGGCGGCATTCATAGAGAATGTCGTAGT 395183 37 100.0 36 ..................................... TGCTAGTTGCTCAAATGGAGCGACCAACATTTGGTA 395110 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 100.0 36 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : ATGCTTACTACTCCCTGGGGCAGTTCCAACGATCGATCGAGTTCTACCAGCAGTCGTTAGACATCTCACGGGAAATCGGCTATCGCCAGAGCGAGGCTACGAGTCTTCAAAATTTAGCGAGAGCCTATCATCTAACTGGCAGAGTGAAGGAAGGATATCAAGCAGGTTATCAAGCTCAGCAGATTTTACAAGAGCTAAATTTACCTCTAGAGGCTTATCCGATTCCCAAGTGGCAAAAATCGATCGCTCGATTTGCTCAAAAGGGTAAAGCTCAATTCGCAATCTGCTTCATCTTGGGAATTTTGGGTCTTCGGAGTTTGAGGTGATAATAGTATAATAGAAAACAAATGCAGGCGGATCTAAAGATGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATCTCGTTAAGGATAGGGGCGTACT # Right flank : TATCAAGCTCGACAAAAGTAGGACGGTGAAAAGACTGTTGAAACCCAATAAAATACCGGGTCTTCGGAGTTTGAGGTGATAATAGTATAATAGAAAACAAATGCAGGCGGATCTAAAGATGAACTTTTTTGTAGAAGACTTAATCAACTTACCCAAAGTAAGAGTGAGAAGCGTGGTCAGGGAACGCGAAGCAATATTTTTGCAGCTAGGCTTTAGAGAAGAGGAAGTTGCCTGTCCTCATTGTGGCAAAAAGACGGGCGAACTTAACCAAACACGAACCGTTAGAGTTCGAGACTTGCCCATTTCGGGTCAACTCGTATATTTGCAAATACCACGGCGTCAGTTTTACTGTAAAAAATGCCAACAATACTTTACAGAAGAACTATTCCCAATGCCCAAATTGTCGTCGATAGATTTCACGTTATGAAAGCGGTGAATGACAATCTAAATAAAATCCGGGTCTTCGGAGTTTGTGGTTATAAATGTATAGCATGATACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 976785-980599 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================================================================== ================== 976785 37 100.0 35 ..................................... TTTGCAAAATCCGATCCGCTTCCAGATGCCCCACC 976857 37 100.0 35 ..................................... AGAATATTGAGCGCAATCATACCAAAGCAATAGAA 976929 37 100.0 36 ..................................... AAGCCTTTGACGTCACCATTTTTTAGGCAATCGCGA 977002 37 100.0 35 ..................................... GGGCGCCAAGCCGCGAACTTCTCGATTGCATATCC 977074 37 100.0 35 ..................................... CCCCTGCCGATCCCACCGACGGAACTCGACTTTTG 977146 37 100.0 37 ..................................... ACGGAATCAGCGATCCGATTACCCAAAGCTACGTTCC 977220 37 100.0 37 ..................................... TTAAAGCGGCCTTCGACGGCGAAAAGCTGGCGGTTTT 977294 37 100.0 35 ..................................... GATTTACAAGATAACTGACAACAACTAATTATAAA 977366 37 100.0 37 ..................................... AAGGAGCAATAGAATTAAATTCCTCTTCTGAAAATGA 977440 37 100.0 38 ..................................... GGAACCCCAGAAATATCGTATTTCTGACTTCCAAATGT 977515 37 100.0 36 ..................................... AGCAATTTGGAGAAGACAAGTATTACGGCGGGGAAG 977588 37 100.0 35 ..................................... AACTACAGCAGCGACAACTGGGACGGCGGCGACGA 977660 37 100.0 38 ..................................... ACGTGCTGACACCAGCTAACAAGGTGAGATTCTTCAAA 977735 37 100.0 37 ..................................... TGCAACGGAGGGCGATGATGACATGACTTATCTCAAG 977809 37 100.0 234 ..................................... CTAACATAGAACCCACATTCCGCACTTCAAAACGTAGTATGTTTGTCCGATCTGTCAAAACTTTATGCAGAAAGCTTTATCAAGATCGCAAGTAAAAATACATACTACACAAGTTATTGAAATTTATTTTCAACAACGAAGGCTGTAATGTACTTTCTTCGTTAAAAATCCTGTTGTAGTATGCTTGTGGTGCGGAAAGTGGGATAGAAGCAAGTTGCATCCTTGCAACATCGA 978080 37 100.0 37 ..................................... GTTGAGGAGTCGTTGCTGTTGTCGCAACGTTCGCTTT 978154 37 100.0 36 ..................................... CTGTCCAAGTTTGTCATCCGTTTTAAAACGAACGAC 978227 37 100.0 35 ..................................... ACGGGGTCGCCGTTAAGCCGAAAGTCCCCCACCCG 978299 37 100.0 34 ..................................... TTTGCTGGGTTTCTTGATTTATTTCTCCACCAAA 978370 37 100.0 38 ..................................... TTAAACTAGCCTTGGGAGTTTGTTGGTCAAAGAAAAAA 978445 37 100.0 35 ..................................... TTCAAAATTATCAGAAAAAGAGCGAACTGAGTTAA 978517 37 100.0 35 ..................................... GATGCTCACGGCTGCCGAGTCAGCCGTCGAGTCAG 978589 37 100.0 36 ..................................... ACGGCAAACGCCCAACTCGGAAGGGCGATCGCCCAC 978662 37 100.0 36 ..................................... TGATTCAAAAGCGGTGCGTCAGAGAAAGTCTACAAA 978735 37 100.0 36 ..................................... CCAATTTCAGGATGAGAGAAATCGGGCAGCCAGAAA 978808 37 100.0 35 ..................................... AGCTCTCGAAGTTGACTATCAACTTGCCCAAAGAA 978880 37 100.0 36 ..................................... TAATTCATACCCTTTTCGTCAGGGTCTAAACGCTCA 978953 37 100.0 35 ..................................... TTTCGGCGATTGCCTTGGCAGCCGCTTCAGCGATA 979025 37 100.0 36 ..................................... CCAAGACATGGACGCCGTTCATACGGCGGGGGGCGA 979098 37 100.0 37 ..................................... GAGCCTCGATACTAAAATCACAAACGGTCGTAGATGG 979172 37 100.0 36 ..................................... CACCCCTCAAAAGAATCGTGCGAGACGATAATTCCG 979245 37 100.0 37 ..................................... GCGCGGATCGCGGCGATCGTAGAGGCGACGATCCCGC 979319 37 100.0 35 ..................................... TCGGATGGCAATGCCGCCCGATATGGATTCCGTCA 979391 37 100.0 35 ..................................... ATTTTCTTGTGGTGGCGTGGGGCAAACATACGAGA 979463 37 100.0 35 ..................................... TTTGAACTCAGTTTCGATCGGCACTAGAATGTGAG 979535 37 100.0 37 ..................................... TCTCGAAACTTAAACATGGGATACTCCTATGTGTTAA 979609 37 100.0 36 ..................................... AGTGCTAGAGAGCCAACGTCCTAGCGTTGAATCGCT 979682 37 100.0 36 ..................................... TCGAAACCCGTGAAATTTCGCTGGGTTTGGAATCGA 979755 37 100.0 36 ..................................... GAGATGCCCGACGAGCTAAATATTGTCACGGGAATT 979828 37 100.0 35 ..................................... ACAGAGGTGATAGCCTTGCGCGGGGGACGTGGAAA 979900 37 97.3 35 .....................A............... GACACAAGTTTTTGATGATTGCTGAAAGGCTTTGA 979972 37 100.0 37 ..................................... TCCTTTTCCTTCTACAACGGCTCTCGCAAAAGACTCG 980046 37 100.0 33 ..................................... TTCCATTCGCCACGATCTTTCACCTAAAGTTAG 980116 37 100.0 36 ..................................... TGAAAATTCCTGGGACTCGATTGAGACGGACGAGCC 980189 37 100.0 36 ..................................... GTATTTCCCATCATTGCCCCGGAAACCTCTGACCGA 980262 37 100.0 36 ..................................... TTTAACCGAAGGGGAGAGAAAACCTACCAAGTCAGT 980335 37 100.0 34 ..................................... ATTAGCAAGCTTGGTGATTGCTGCACCAAATTGC 980406 37 100.0 37 ..................................... TCTCCAAATATCTGATTTTTAGGGTCGTTTGAGTCCA 980480 37 100.0 46 ..................................... CACAGCCCGAGCGATTTTGTGGGCGAACGACAACGAAGAAGCCCAG 980563 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================================================================== ================== 50 37 99.9 40 CTTTCCAATTTCCAAATCCTGGAAACGGGATTGAAAC # Left flank : AACAACACATTGTTTTATTTGGTGGTGTACGATTTGCCGGATACGAAGGCGGCGAACAAGCGTCGGACGCGGCTGCATAAGTTGCTTTGCGGTTATGGGGTTTGGACGCAGTACAGTGTGTTCGAGTGTTTTTTGACGGCAGTGCAGTTCGCGCGTTTGCAGATTCAGATCGAGGAGTTAATTGAGCCGAAGGAGGATTCGGTGAGGATTTATGTGTTGGATAAGGCGGCGGTGAAGCGTGCGATCGTTTACGGTTCGGATAAGCCGCGTCAAGTGTCGGCAATTGTTTTATGATGGTGTCACGCGAGCTTTGGCAAACCGAAGCGGGGTTGAAAACTCTAGGGGGTTTGCCAAATCGCCAGAACCTTGACAATTCAATAGTTTTGGTGTTTTCATGGGGGTGAGGTAAGGATGTGCGATCGGCTCGATTGTGGGTTTCGATCGGGGTTTGCCAAATCCTGCTCCCAACCCCCCTCTGGGTCGAGGTTCTGACTGGCGGA # Right flank : CTGAAGGTAGTAGATGATTTTCAGCATCTCCGAGATGCCGGGAATCTGGCTCGAGTACAAATACAGATTTTATGTGTTTTGTCAACCCCAGATCTCGAAAAGTTTTCTGCACCACTGAGACTCAGCGCCTTCTCGAGCTAGAGCGTCGCTCATCTTGAAAGGGCTGGCATTGCCCACCCGACAAATGGTGTAGATGTGTAACTCCTGACAAAATTTCTTTTGAATTCTTGTTAAGGAATGTACTAAACCGTTAAGAATCGTCTCTAAGGGACAACAAATAAATTGCTTTAGTCGTAGGCTAGAGTCCAGTCGGACTACAGGCAACGGGGTAATTTAGGCTTTGACAATAAGCGAATTTACCTATTAAAAAATCTGAGTTCGTCTTCAATTCATCAATGTCCCTATCGATCGCACGTCGAAATTGAAAAAACTTGGTTTCGCGGTGCGATCGCACCCTTGAAGCGACAACGGGAGATCGTTATATGAAATTGGCTTACTGG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAATTTCCAAATCCTGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 2108707-2112958 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 2108707 37 100.0 41 ..................................... ATCGGGATTGCGTTCTTCATGTATAGCGTGGGGTGTGTCCA 2108785 37 100.0 35 ..................................... TTCAAATCCAAGCTGGGGCATTACTTACTTACTTA 2108857 37 100.0 37 ..................................... TTATCAACTCAAGGATAAGTGAAGAGATTAGAATGAT 2108931 37 100.0 37 ..................................... GTTGACGTTCACGACGGAAGCTTTCGGCTTTTCAGCC 2109005 37 100.0 37 ..................................... TTATCTATATCAGTTTTTTCTGAAACAAATTGATTAT 2109079 37 100.0 36 ..................................... TTTCCTGCTGCAATCTTACCAGTATTGAGCAAGTAG 2109152 37 100.0 40 ..................................... TTAACGCAACAATCTTGACAGCAACCGCCTTCATTCTCTA 2109229 37 100.0 43 ..................................... GAGGTAGACAGGTTTAAGATACCTAAGACTACTTGCTGGTCAT 2109309 37 100.0 39 ..................................... TCTCAGGAGCTAGGGTTAGAGGTCTCAGAGGTGTGGGAG 2109385 37 100.0 45 ..................................... GTTGGTGTCGTCCACTTCCTTGTCATGGGGAGGTAATCAGGCAGG 2109467 37 100.0 44 ..................................... GTAGGAGGACAATGTACATGTGATATAGGAAAAATATCTTATAA 2109548 37 100.0 37 ..................................... TGCATAGCAAAAAAAAGGTCTGTCTTTAGCTCCGATA 2109622 37 100.0 44 ..................................... ACGTGCTGGCTTATCTGATTCTTCGCCAAACCAGCTAACGTAGC 2109703 37 100.0 37 ..................................... TTTTCCTGTAAAAGCTCACAATGCTCGCAACCATATG 2109777 37 100.0 41 ..................................... TTTGAAAATCTTGAGTTGACTGAATTCAACCGACTCAAAGG 2109855 37 100.0 37 ..................................... TTCACCTGAGAACTGCGACGAGAAGACAAAAACAAAA 2109929 37 100.0 41 ..................................... TCTGCTGATGCACATCTGGGCGTTCTTTAACGAGGGGGATT 2110007 37 100.0 39 ..................................... GAAGTAGCAGCTAAGCGTAGTCGTGAAGGCTACGATAAG 2110083 37 100.0 46 ..................................... AGCAAAAGAGGAAGAAAGACGAAGAGAAGAAGAAAGAGGATACACA 2110166 37 100.0 38 ..................................... GATCAGTATACATTAAAGCCTGATGGCTCTAAGAGCCA 2110241 37 100.0 43 ..................................... TTTTCAACGTTTAGGGACTCTAAGCAAACTTAATGAGAAAAAT 2110321 37 100.0 49 ..................................... GGGGGAGCTCCCCAAGGTAGGGTGGTCCATTCACGATGACCGCCTCCGC 2110407 37 100.0 43 ..................................... AATGGATTCTCAAACCACCCTAATGGCTCAAAGTCTTTTTGGA 2110487 37 100.0 36 ..................................... ATTAATCTAACGGATCTTACTTCCTTTCAATAATTT 2110560 37 100.0 37 ..................................... ATTAAGAGGAGTCATTTAAAGGTAGACTCCTCTATTA 2110634 37 100.0 39 ..................................... GTTAATGCCGATTGCGAAACCGACCTGATCCTCAAACAG 2110710 37 100.0 42 ..................................... GTAGACCTATCCCGACCTCGGTCAATGGCACTCCTCTGAGTC 2110789 37 100.0 36 ..................................... ACCATATGACAGGGGAAAGTCTCGTCATTAAAATTA 2110862 37 100.0 43 ..................................... ACGCGCGGTGTCGGCGGCGCTGCCAAGCAGCGTCAGCAGCAAC 2110942 37 100.0 42 ..................................... TCGAGAGCCTCCGGGTTCAGGTGGAGCTTATGCTCCCATTGT 2111021 37 100.0 43 ..................................... TTGGGGGTAAGATCCGTAACTGCTCCCACATACCTATCCTCAA 2111101 37 100.0 43 ..................................... CTCAGTTCGTGGAAACCCTTCTGGCCTTCGAGGCCAACGGGGT 2111181 37 100.0 36 ..................................... TTCCCCTTCAGGATAGCTCCAACCGAAATCAATGAC 2111254 37 100.0 39 ..................................... ATAGTCTATCAAGACTATTACGATGAGGAAGGCTATCCT 2111330 37 100.0 42 ..................................... GAGCGGTTTGTCGGACTCGGCAAAAACAAGAAGGTCTCTTTT 2111409 37 100.0 38 ..................................... GGAATCCCCAACCCGCCCGGAAGGAGGAGGTCGGTCGC 2111484 37 100.0 36 ..................................... CGAAGAGGTGGAAGCGGAAACGCTCAAGCCTAAACT 2111557 37 100.0 38 ..................................... CCTTTGCAATAATTCCCAACGTCTAGAAATTGCCGTGG 2111632 37 100.0 40 ..................................... AGTAATCACCTCCTTTTCTTTTCCTTTGACTTCCACTAAA 2111709 37 100.0 37 ..................................... TTAGGACTCACCCGGAAGGAGATGGAGAAACAAGGGC 2111783 37 100.0 36 ..................................... ATTCCTCTCCGGTGAGCTTCTCAGCCTGTTGACTGA 2111856 37 100.0 42 ..................................... GTGAAAGACCTCCAGTCGGAGTACCCCGTCACGGAGGAGCAG 2111935 37 100.0 38 ..................................... ATCTTCAAAAGTTTGTAGAAAGAAGGTTAACAGCGGAA 2112010 37 100.0 40 ..................................... CAGCGTCAACACGGTCTGCTTACTTGACCAAGCCCGCTTA 2112087 37 100.0 39 ..................................... GTTTCTTATTCATTAAACCCTCAATTACATAGACCTTAA 2112163 37 100.0 37 ..................................... AGAGGACGGGTGGTACTACTTTCACCGTACTTCCATT 2112237 37 100.0 38 ..................................... TCGGCGGCCTGTCCATCGTCAGCGTGTATCTCAACAAC 2112312 37 100.0 37 ..................................... GAAGACCGTCAAATTCAATACCAAAAAATTCGGATGA 2112386 37 100.0 43 ..................................... CTAAAGCCTGTACCCAACCTTTCCTAGAATCGCCGATAACTAG 2112466 37 100.0 38 ..................................... GAAGTAAGTATAATGGGAGTTTATATGGAATCCCGACT 2112541 37 100.0 37 ..................................... AGATCCGTGGCAGATCCAAATCTTTAACAACTTAGAT 2112615 37 100.0 40 ..................................... GGGATTATGTAGCAGAATCTTTTCATCATGCCCAAAAACA 2112692 37 100.0 40 ..................................... GGGCCGGTTCGACTGGCGGGTGTCTCAGAAGTTCGCTGAG 2112769 37 100.0 42 ..................................... CATTAGTTTGTTTCACTCAACTTGTAAGGTTAAGCAACCCTT 2112848 37 100.0 37 ..................................... AATCTAAAGAAATAATGCTTAAAAGAGGGCCACTATA 2112922 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 56 37 100.0 40 GTTTCCGTCCCCTTGCGGGGAAAAAGTAGGGAAAAAC # Left flank : GCGTTATGGTAGGCACTCAGGACGTATATTGAAGTTATTTCCGCCGTAAAACCCATTCTCAGTAGCGGTTCTGTGCGCTGCGAACTTCCGTGTACGAAACCAACTACTGAGTTATCGTATTCAGCAACATATGCAGCGTCCATAGATGTGTTGCTGTTTGTCAGTATGCGTTCCCAACCTTCGCTTCGTTTTTTTAAAGATAAGTTTTCGAGTAATTCCGAGGGAAGTATATTGTGGTATGTCTCCTGCCATGATGTTACATGCACAGTTGCGATGGCATTTGCGTCGGCTTTACACGCCGTTCGATAATAAACGGACATATACCATTCTCCTTTGTTTCTCTCTTTTTCCGCTTTACTTAAGCGATGCGAACTCGTCGATCGAGCTTTCGTCAATGACCAAGAATAATGGGATACAAGCCCCGCCCTTCTAGGGCGGCTTTTTCTGGTTTTCGATGTATTAATGAGCCTAGTTTTTCCAATCCCGATTCATTTTATAAA # Right flank : CCCTATAGCTTTAGAAACCTTGTGCTATTTAGTTTTCAAGGTGCAGTTCCGCGAAGCTGATTCACACTCTGTTACAACCTCGATCGCTTAAAAGGTTTCAAAAGAAAATCTTTTGAATTTGAAGCTGTACTAACTTTATCGAAAACGCGAGACGCTGTCAACTCAAAATTCGTAAAATTGCAAAACTTTACATTTTTTCAGGAAATTTTAAATTTACTTTAGCTTTCCGCGAAGATAAAACCACATTTTACAAAAAAAAACACACTCAAAACCTCCATCTCAAAAGACAGAAAGCCATAAAACTTCCAAACTTAAACCCCAAAAAACAGTTACAAAATCAAAAAATCCGGCGGTTCGTAAGGCGGCGGCGACCCAAACACCCGCGTTTCCCGTTTCGCCCGTTCGTCCAACGGATACACCCGCAAACTGTCTTCGGGTAACTCCAACACCCGCAACCACCGCTTCAACAACCGCTCCAACATCTCCTCGTCGCAAGGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGAAAAAGTAGGGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 4 2370335-2367638 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2370334 36 100.0 35 .................................... AAAGAATGGGTATTTCAGCCATTGCTTATTGACTC 2370263 36 100.0 35 .................................... GACTTTAACCATGCTTGGTGAAAATGGTATTTATG 2370192 36 100.0 38 .................................... AGCGAAATCCTCAAAACTTTCAGGCAACGATTTGAAGA 2370118 36 100.0 35 .................................... TGTCCGCTGGGTGTCCAGTGCGATCGCATCCAAGA 2370047 36 100.0 37 .................................... GAGGTCGATTCCTTTATCCTCACACCATTTAGTCAGG 2369974 36 100.0 37 .................................... AGAAATGCAGTCGCTCGGATCGTCGCTCGGGCGCAAG 2369901 36 100.0 38 .................................... GTAGGCAACGCGCCCGACGATCGCCTTCACCGATCGCT 2369827 36 100.0 34 .................................... CTAACCGAACAAGCAGAAGAAGCAAGGGTGGCTC 2369757 36 100.0 36 .................................... GGGTTGAGGTCTACCCCTACAAAGGGTTTCGGATAA 2369685 36 100.0 34 .................................... GGGACGTGGGCGGCGGCTATCGCGATGTCGCCAT 2369615 36 100.0 34 .................................... TCAAGTCATGCTACACAAATAAGAACACGGGGGT 2369545 36 100.0 35 .................................... AAACTTCACGCCAAATATCGCCAATATCTGGGGAA 2369474 36 100.0 38 .................................... CAGTAATGCCAAAGCTCCCATTACTTGAATGGATCGGG 2369400 36 100.0 36 .................................... CCCGTAAAAATTCGAGAAACAATAAGCGTATAACAA 2369328 36 100.0 35 .................................... AGGTCGGCATCACCTTTTTTGTGCTTAATGTCTCT 2369257 36 100.0 36 .................................... GACTCCAAGGGGCAGGCGGCGACGCTGTTTCGCAAG 2369185 36 100.0 35 .................................... TGGGGAGCTTGGGAGGGAACGAGATTCGACGTGGG 2369114 36 100.0 37 .................................... TTCCGCTCCGTCGTCCCCATGTTGTCGGCGAGGTTGT 2369041 36 100.0 35 .................................... ACTACTCCGTTGGCTGACTTCATCAATACCTGGAA 2368970 36 100.0 38 .................................... ATTTGTAGCTCTTCCGGGGTGATAACGCAGACTTTACA 2368896 36 100.0 35 .................................... TATCTGTGTCTATAATACAAAAAAAGAAAAAATAG 2368825 36 100.0 35 .................................... TGAAAACTGTATATTATTATTATACAATTTTCACA 2368754 36 100.0 34 .................................... TAAATAGTAAATGCCACACTTACGTCTACTAAGT 2368684 36 100.0 36 .................................... AGAGTGGACTAGAGTTTGTTGCTCGTCCATCTTCGA 2368612 36 100.0 38 .................................... TGCGAACTCGGCGAGCGTATGGCGGTGGGGTTGGCAGT 2368538 36 100.0 35 .................................... GGTGTTCGTCGAGCGATCGCAGAACTCTCTAACAG 2368467 36 100.0 35 .................................... CGACATCGATGTTTGGTACGAGAGCGAGAATATTT 2368396 36 100.0 37 .................................... ATGCAGATGGTGGCGTTGGCGCGGCGGGGATTGTTGC 2368323 36 100.0 37 .................................... AGAAACATCCAAAAACGGTGTGAGTATCGCGTTCCTA 2368250 36 100.0 35 .................................... ATGAATCGGCTAAAGTCATCGTTGTTGTTCAGAAG 2368179 36 100.0 37 .................................... TTCATCTATGGAGCGCCGTGGGGATTAACGACAGATA 2368106 36 100.0 35 .................................... AGGCTCGAGAGACGTTGATTTTCTTCTCATTCTCA 2368035 36 100.0 35 .................................... CGGACGGGCGGATTTACGCGCTCGTCGAGTCGCAG 2367964 36 100.0 36 .................................... GATTCTTTTATGCCAATGTTGTTTGCTCCTCTAGTT 2367892 36 100.0 36 .................................... AAGACTTAATTAGGGATTATCAAGCTGATTTAGCAA 2367820 36 100.0 38 .................................... TATGCAATGCAAGAAATCAATTCTTGGGGCACGCGAAA 2367746 36 100.0 37 .................................... CTTCCCATACCCAGCCGAGAGGAAATTATTGCCGCCT 2367673 36 97.2 0 ................................A... | ========== ====== ====== ====== ==================================== ====================================== ================== 38 36 99.9 36 GTGAATTTCCTTCGATCGCCGTTAGGCGTTGAGCAC # Left flank : TTCTCCGAAACGCTGGCGCAAGGTGTATAAGTTGTTGCAAGGATATGGGACGCGCTTGCAGTATTCGATTTTTCGCTGTTGGTTGAGTCCTCGGGAGCGTGAGAAGTTGCGTTGGCAGCTCGAATCGATTTTGGAGCCAGAGGACGATCTGTTATTGGTTCGCCTGTCGCGGCAGTGCGTTCGCAATTTGCCACAGTACAATCGTCCTGATGCTTGGTCGACGGACGAGTTGCCTTATCGCTTACTCTAGTTGACAGGGATCGGTCGATGTTTCGAGTTCGAGTTGGGTCAGAAGGCGGAAATTTGAGGTAGGACGGGGAGTTGAGGGCACGGAAAAATCTTCGAGATGCTTGTCAAATCTTGAAAGTCTTATGAGGCAAGGGTTTGCGAGTTTATGAAATTTGAGTTGACTTGGGGTTTTTCTACAATCTGCTTCCGAGACAACGTTCTTTGTAAAATGGACTGGGGGACTATGGCCCTTAAAGGTTTCCCAAACCGCT # Right flank : TCGATCGAAAGTACGTTCCAAAACTTTGTCAACACTCAGCAAATTCCCTATAAAGTTGTATTTCCTTTCCCTGCGCTCGTATCTTTCGAGACCATGCTTCCAACGACGCTTCTCATTCTCGACCTGGAAACGACTGGAACCGACCCTAACACCGATCGTGTTATCGAACTTGGGGCTATCCTCTACTCCATTACTCACCGCTGCGTCTTACAACAACTTTCGACCCTGTTCTCCGTTTCGAGCAACGCTGCCGAATCAATCAATCGTATCCCCACCGCTGCGGCACAGTCTGTCATCCGTACTGAATCCCAAGCTGTTCTCTTCCAATTTCAACATTGGCTCGATCGCACCGATTACGTCGTCGCCCACAACGCTCAGTTCGATCGCCAGTGGTTCGGACGAGGAATCTTACCATCAATTACCAAACCCTGGCTCTGCACTTATGACGATTTTCGCTGGCCCGAAAACGACAAACCGAGAAATCTCGTCCAAACGGCACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAATTTCCTTCGATCGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 5 3949816-3968587 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3949816 37 100.0 39 ..................................... ATGAGTCCCCTCGGAATCCCCGATATGTGGCTGTTCTGG 3949892 37 100.0 35 ..................................... TAGGGTTGGAACGAGTCCTTGGAGGATGAGTCGTT 3949964 37 100.0 34 ..................................... CGATTTTCTCAACTTCGGCGGGTTGGCGGCGATG 3950035 37 100.0 36 ..................................... GGAAATTTTAGACCTGACAATTTAATTTTCAATACA 3950108 37 100.0 35 ..................................... GTCGGATTATTTATTTCGTAGTTCCCACCGGGAAG 3950180 37 100.0 36 ..................................... TAAGCGCAATGTCCGAACTTATTGATGGACTGAAAA 3950253 37 100.0 37 ..................................... AAAGCCGACACCGCCCTCTCAGGGAGAGAGTTTCGCG 3950327 37 100.0 37 ..................................... CTCGCTAATTTCCAATACAGAAATCATAGCATTTCTC 3950401 37 100.0 36 ..................................... CAGAAGTAATCAACTCGAGCGGTACACTCAATTCGA 3950474 37 100.0 36 ..................................... GTAAAAAACAGATGCCTAACGACAAACCATCGCAGA 3950547 37 100.0 36 ..................................... GATTGCTGTTCGTTTCATGAGTCGAAATGGTTCCTT 3950620 37 100.0 36 ..................................... AAGCACTTGTGGAGTGCAGTAGGTACTTATATTGAT 3950693 37 100.0 34 ..................................... TGTCAAACCCCGAAGGCAATCCTTTGTTGGCGAT 3950764 37 100.0 40 ..................................... CCTACAGCAGAAGCAACAGCCTTGGCGAGAGCGCCCGAGC 3950841 37 100.0 35 ..................................... TTGCTTGTTGTAACCGAACAGCAACAACTGATAGA 3950913 37 100.0 34 ..................................... GAAATGCTATTGTGTAAGCAAAAGACCTTGCCTA 3950984 37 100.0 37 ..................................... TTTGGATTGAGCCTTAAGGTATCGACGAATTCGCTTA 3951058 37 100.0 35 ..................................... ACAATTTTGGGGCGGGACTGCTCGATCGCTTTCAA 3951130 37 100.0 35 ..................................... GCGTATATCCTGGCGACGGCATACCACGAGAGCGA 3951202 37 100.0 35 ..................................... GTGGTCGATTTCGATTCGGGCAACGAATGCCTTCG 3951274 37 100.0 35 ..................................... TCCAGCAAAATCAACTTCGATGGATTCGTAATGAG 3951346 37 100.0 37 ..................................... CTTATCGCTCCCCCCGAGCGCTACCTCGAAGTCGAGG 3951420 37 100.0 36 ..................................... TTTAATCTTTTGCTTCTTGCTTTTTTGGCTCCAGTT 3951493 37 100.0 36 ..................................... CGAGATTCAAGGCGGATGGAAGGGACACGCCGAGAT 3951566 37 100.0 36 ..................................... CCATGTCTTCTACGACGCCTCCCGTGCTTGCAGACG 3951639 37 100.0 34 ..................................... CTTTTTGGATCGCCCGCCCGTGTGGGTGCATCAG 3951710 37 100.0 36 ..................................... GCCAAACACAACTACTTGAAGGTACGACAAAATGAA 3951783 37 100.0 34 ..................................... ACATCATCATCGGTCGCTTGCGCTGCTCTGGCTT 3951854 37 100.0 34 ..................................... GAGGTTCGCAAAGCAGTATGGGCAGTTGTGGCTA 3951925 37 100.0 37 ..................................... TTGATGGCGCCCTCGAGTCGTTTCGGCTTCCGACTCA 3951999 37 100.0 38 ..................................... CTCCTGTTGCCCCGGTGAGAACCCGCCTGATGACACGG 3952074 37 100.0 34 ..................................... CGATCCTCGGAGCTTCCATCCTTTCGGGGCAGAT 3952145 37 100.0 38 ..................................... GGTGGATCGACAATCGCCAAGAATTTGGATGCAGTTAG 3952220 37 100.0 35 ..................................... GTTCACACCCGCCAACTGTTCGGATTTAGAGAGTG 3952292 37 100.0 37 ..................................... TTTTTTCCAGGTTCGTAGCTCTTTGGCTGATAAAATA 3952366 37 100.0 34 ..................................... TGTGACCGTCTCGCCCGGCGGCGACAACTGCCGA 3952437 37 100.0 38 ..................................... TGAGTTTTTCCGATTCTCTCTCGACGATGACAACCTGT 3952512 37 100.0 36 ..................................... TCCCGACGAGATCGCTTGTGAAACGACTGAAGGTAT 3952585 37 100.0 36 ..................................... CCAATATTTATAAATAAGCAGAGCGGCGATCGCTGC 3952658 37 100.0 39 ..................................... TCGGCAGGAGCATCGCACTCGCCGCTGTTGCCATCGCCC 3952734 37 100.0 35 ..................................... ACTGTCATCTGACGCCCCCGGTATTTCCTGTTAGT 3952806 37 100.0 36 ..................................... GTTATCAGGGGGTTTCTGAGAAACTCAAGGCGGGAG 3952879 37 100.0 35 ..................................... GGCCATCACGATCACCATCGCGCCGCCGATCGTCA 3952951 37 100.0 38 ..................................... TAAACGGACTGCTCCAACAAGCCAAAACGATCGTCGAC 3953026 37 100.0 39 ..................................... ACAGCACCTCGACTCGAGCGAGGTCGAGATTCATCTCAA 3953102 37 100.0 36 ..................................... GCGAAATCCTTGAAGGCGAACAGCGAAAAGCCGAGA 3953175 37 100.0 35 ..................................... GCCAGGGTTAGCTCGGACTCGCCGCTTGCTCGAAT 3953247 37 100.0 36 ..................................... ATCGACACGGCCGTTAACACGGGAGCGGCGTTCGAG 3953320 37 100.0 36 ..................................... CTATTAATTCGTGTTCGAGGTCTGACCCCGCAATAG 3953393 37 100.0 35 ..................................... CCTTCTTCCGTCGATCCGGCGTTGTTCGAGTCGAA 3953465 37 100.0 37 ..................................... GAACACGTTCACCCGGTCAAACACCAACCTCGAGATG 3953539 37 100.0 34 ..................................... TTGTTCGTAGGGAATCAGATGCCTTGGATTTCGA 3953610 37 100.0 35 ..................................... ACGCTTGCGAGATTGGCGAAAATGGTACGCGAATT 3953682 37 100.0 34 ..................................... CTAGAGACCCTGCCAGCTAAGGCTTACGGACTGG 3953753 37 100.0 36 ..................................... TTCGGATCCGTATAACAGGATCGCGAATCCTTCGCC 3953826 37 100.0 37 ..................................... TCGTCGCTTGGGCGGTGTTTTGTCGCCAGCAACTCGG 3953900 37 100.0 35 ..................................... TTGCGATTCAAGATGTTGTTGACGAAATGTCGAAT 3953972 37 100.0 35 ..................................... GAGAAAAAAGTCTTACAAGTCTAACATCTCTTACA 3954044 37 100.0 35 ..................................... CCCCCAGTCGAGGGGGTGGTGGTGTGAGAAGCACC 3954116 37 100.0 36 ..................................... AAGACTGCGAATCCTTGAGGGATGATATAGGCGTCC 3954189 37 100.0 37 ..................................... GATCGAGAACTCCCCCGCCGGACAATCGACGAGGGCG 3954263 37 100.0 35 ..................................... GATTAACGCGATTTGTAGATCGTCTGGACTATGGC 3954335 37 100.0 35 ..................................... AAAAGATTGTTGGAGCTATGAATCTCGGTAAGCTC 3954407 37 100.0 34 ..................................... TTTTCAGACTGTACGCCCAACCAACCCATTAAAA 3954478 37 100.0 37 ..................................... TGTTCTCGGCGGACGATCTCGATATACAATTGATAGA 3954552 37 100.0 34 ..................................... ATGATGAGGTAGGTAAAGAATTAGAAAGCATCTT 3954623 37 100.0 35 ..................................... CTTCATCTAACTTAATCTTAATCCCTTCTTTCAAA 3954695 37 100.0 35 ..................................... ATAACCCTTGTGTCACCAATAGAACCATACTCATA 3954767 37 100.0 36 ..................................... TTTTTATTACATAGATATGATAACACAAAATAAAAT 3954840 37 100.0 35 ..................................... GGACGCATAGACCACTTTGCTACTCCCCGGAAGCT 3954912 37 100.0 36 ..................................... GTGGTGACACAAACTTTGTTTTCAAATTCTAGTTCT 3954985 37 100.0 36 ..................................... AAGTTCTAGGATTTCTTCAATAGAATAGTTATATTG 3955058 37 100.0 37 ..................................... AGTTGATTCCCTACTTCTATGCTCCCAGTAATCTTTA 3955132 37 100.0 36 ..................................... TACACCTGATACCTTTAATACTTAAAACAATGACTA 3955205 37 100.0 36 ..................................... CAATCATCCCTAATAATAGCCTAGAACAGAAAATAA 3955278 37 100.0 37 ..................................... CTTCAAATAATCCAATCATAGTATTTATGTTAACTAA 3955352 37 100.0 35 ..................................... GGCGAGCTGATGTGGGACAAGCGGGGAGATCGAAT 3955424 37 100.0 32 ..................................... GTGTGGCTGTGGGTCTGAAGTGGCGATCGCCC 3955493 37 100.0 35 ..................................... CGATCGAGCGGTGGCAATGGTGGCGAACCCTTCAA 3955565 37 100.0 38 ..................................... GAGCAAGATCCTGAAATCGCAGAATTCTACCAACTCAA 3955640 37 100.0 33 ..................................... GTGCCGGATATCGGGAAAGTGCGATCGCGCATC 3955710 37 100.0 35 ..................................... TACTCGCCGCAACCCTTAAAAAAACTCGCGATATT 3955782 37 100.0 34 ..................................... AGGGTTCTTCGATGCGAGACGGGCTAGGCGACCC 3955853 37 100.0 34 ..................................... CAGAGGAGGCTGAGACCCAGCCTATCATTGTCAT 3955924 37 100.0 37 ..................................... CGTTGGCTTCATTGGCGCATTTTTTTTAAAACGCAGA 3955998 37 100.0 36 ..................................... CGAGGCGTCAAACGACCCACCCCTGGCGCTCCCTTC 3956071 37 100.0 34 ..................................... AATCTCGCAGGCGTATACTTGGGCGTAGGGGAGG 3956142 37 100.0 36 ..................................... GATATCGCGATCGCCTCCCGCGAGAATTTTGCACGG 3956215 37 100.0 38 ..................................... GTAATATCCGTGCTGCGACACGTCGAGATTTAAATGGA 3956290 37 100.0 36 ..................................... CCGAACGATCGCCTCCCTCAAGTCGTCGCCGCACTA 3956363 37 100.0 37 ..................................... GCTGTGAATGGGCGTAAAGAAGAATCGAGGTGTAAGA 3956437 37 100.0 37 ..................................... CATACCCCCTCCAACTTTTTTAAAAAAAGAGATCGAA 3956511 37 100.0 34 ..................................... GAGGTCTTTGAAGGGCTAAGCGACGAAGACAAGA 3956582 37 100.0 36 ..................................... TTTCGAGACCTGTCTCACCGATATTCGTAAGGTCAA 3956655 37 100.0 43 ..................................... TTTGTCGCCGATCTCGGACTATTACGAGATCGGATTTTTTCGG 3956735 37 100.0 33 ..................................... TTTGTCGCACGCTCTGCGTATTCATGTCGTAAA 3956805 37 100.0 34 ..................................... CACGTACCGAGATGGTTGCGGTACGGAGATCGAT 3956876 37 100.0 37 ..................................... AACATCGCAAAAGCCTTGCAAATGCTGCACTCTCTCT 3956950 37 100.0 35 ..................................... GGATCGAGAAAGAAATCTCTCTCCATTTAAATCTC 3957022 37 100.0 34 ..................................... GCCCCATACCGCCTCGAACTGAAGCGGGTACTGC 3957093 37 100.0 36 ..................................... ACGGCGCTCTTGAGGCCAGCTTCCCCGATCACAAGA 3957166 37 100.0 35 ..................................... AGGATGGGGGTGAACTCCTCAACCGTCCCCACCGC 3957238 37 100.0 37 ..................................... CTGTAATTCTCCCACCCAAATTCCCTCACGGTGAGCC 3957312 37 100.0 35 ..................................... CTCGAGTACGGTATGGCAGTCTCTCGGGGAACCGA 3957384 37 100.0 35 ..................................... GGCTTCCTCTGGAGGCCCTTGGTATCTGCGCCTCG 3957456 37 100.0 42 ..................................... CGGCAGAATCAACCGGGTGATCGTCGCTCATGCAGTTGAAAA 3957535 37 100.0 33 ..................................... GAGAGCCGAAAAACTACTCGGACGCGCCTATTC 3957605 37 100.0 36 ..................................... CTTTTCGGGGAATAGGATACCGGCGGGGGTGGTAAA 3957678 37 100.0 37 ..................................... TTACAACGTAGACACGATAAGGGTTCTAGCTGTTAGA 3957752 37 100.0 34 ..................................... TAACGGTTTTGTCCATAATGTTCTCTTAGGTGTT 3957823 37 100.0 34 ..................................... CGGCGTCGGACTCGGCGCGAAGCTTTGGTGGCTT 3957894 37 100.0 39 ..................................... CGATTTGATATCGGGCTGCTTCGATTTCCAGTTCCGCCG 3957970 37 100.0 36 ..................................... TTAAATTTAAATGTCTATGAAATAACCCCTTCTAAG 3958043 37 100.0 37 ..................................... TATATGAAAATCTAGGACAGGCTCAACAATACTTAGC 3958117 37 100.0 35 ..................................... TCATTTAGATTATTTTTCTTATTTAATAGAGTTTT 3958189 37 100.0 35 ..................................... AACGAGTTCGACATCTATCCGCCGATCGAGACTGA 3958261 37 100.0 34 ..................................... CGTTGCTTTCTGATTCCAGCGTATGGTCTCACTA 3958332 37 100.0 37 ..................................... TGCTGCCATTGTCTTTCCTATTCCTAACATCTAAAAA 3958406 37 100.0 38 ..................................... CAATGCCCCATCAGATACCTCTATTACATTTTTGTAAA 3958481 37 100.0 36 ..................................... TTTCTCTTATAGCTCTTTTGATTTTAGATGGTTTCA 3958554 37 100.0 35 ..................................... ATCAGATCCAGAGTACGATAGAAAACTAGAAGAAA 3958626 37 100.0 36 ..................................... TATTTAAAAGCTGAGGAGTTGACTACTCTTTATAAA 3958699 37 100.0 38 ..................................... AACTAGAGTTAATGTACCTACATCTAGAATTTCTTCTC 3958774 37 100.0 35 ..................................... GGTTTTTTAAAAAAATGTAATTGACAAACATTGAA 3958846 37 100.0 37 ..................................... GAATTTGGTGGCTCTCAGGCTTGGGCTGACGCAGGCT 3958920 37 100.0 35 ..................................... ACAGTGGGCGAATCTCAAAGGAGAATAATGCCCTT 3958992 37 100.0 36 ..................................... TTATTGATAAGCTACCAGTTCCTTCAAATGGATCTG 3959065 37 100.0 35 ..................................... CCCGCTGCGATCGTCTGTACCGACCCGTCGCCATA 3959137 37 100.0 37 ..................................... AGAATTAACGGAGCGCGGTACGTTTTGGGATTGTAAG 3959211 37 100.0 34 ..................................... TTAACCCCCTTTCGTCGTCAGGGGAGAATGACGA 3959282 37 100.0 37 ..................................... TTGTTTTCCGATCGTGAAAAGGTAGAGGATTTAATTT 3959356 37 100.0 33 ..................................... GGCAAAAAGGCACAGCATTCAAGACTCACGAGA 3959426 37 100.0 39 ..................................... CTGTTGCGGGAGGAACAAGGGGTGCGGGTAGTGTATCAG 3959502 37 100.0 37 ..................................... TTTCCAGATGGCGGAATCATTCGATCCCGCCCATACT 3959576 37 100.0 35 ..................................... AAGTATATTATAATCCTTAAACATTTCCATAACTG 3959648 37 100.0 38 ..................................... TAACTTGACTTTAACCCCTTCTTTCAGGTACATCTCAA 3959723 37 100.0 36 ..................................... GCTATAAAATTTATAGTAAGAGTAAAAAAGACTCCA 3959796 37 100.0 36 ..................................... AACTGATACCAAGACTTTGATTTCTTTAGTGTCTAG 3959869 37 100.0 36 ..................................... TTTTTTGTTGGTGGACACACCAAAGAACCTATTAAA 3959942 37 100.0 34 ..................................... TCTCCAATCATCCCAAAAGGAAACTTTGTATCGA 3960013 37 100.0 38 ..................................... AACTTGTCATGCCGACCCGTCCTTAGATGGGGCATCGA 3960088 37 100.0 43 ..................................... TTTCATATTCTGATACTCTACCCATAATTTCCTGGTGTTCCAT 3960168 37 100.0 34 ..................................... GTAGTACCACACTTAGGGAAACCTACAACTAAAA 3960239 37 100.0 37 ..................................... TTAGGAATCATGGATCTTTCTACTTCCCGTAGAAATA 3960313 37 100.0 36 ..................................... AACGGTCTGCCACCGTGCGAACACACGAGGGGTGGC 3960386 37 100.0 35 ..................................... TAGCCAGTAGCCCTGTCCTGTGTATCTCATCCAGG 3960458 37 100.0 43 ..................................... TCAACTTCCTCGTCTTCTCGGTGCTGATACGATGGGCAATAAT 3960538 37 100.0 37 ..................................... ACTGGCGACGAACTCTCAAAGCTCGCGAACGAATTTC 3960612 37 100.0 37 ..................................... CGAAGGTGTACTCTTTTGTTCCGTAATTTGGGCGAAA 3960686 37 100.0 38 ..................................... TAAGATACTTTTGTTTTTGTGAAAACTGTATATATATA 3960761 37 100.0 35 ..................................... ACCTATGAGGGCATTGGAGGCTCTAAACGGAGATG 3960833 37 100.0 34 ..................................... CATCTTGCCATCATTTCCGAGATCTCCATTTTCT 3960904 37 100.0 37 ..................................... AGTATCACTATCAAAGTTTGAATTTAAATTATTTAGT 3960978 37 100.0 36 ..................................... CTGTTAGGTTTTTATAGACTTCGCATAGAGCTACAA 3961051 37 100.0 32 ..................................... GTGATCTATAAACTCATATGGTCTTAGGACAA 3961120 37 100.0 36 ..................................... TGAAATGCGAGGATGTAGTTTATGACTATTGTGATA 3961193 37 100.0 34 ..................................... AAAGATGCTATTTCTAAGGGTAGAAAGGTTTTAA 3961264 37 100.0 34 ..................................... AAAGAGGGCTTAATAGATATGGTTCAAGGCTTTT 3961335 37 100.0 39 ..................................... ATGGCACATTTTGAAAAGAAAGGCTCTTTTGCACGTTGA 3961411 37 100.0 36 ..................................... AGCTTTGAGATAAACTGGAAACGGGGTAATATGATT 3961484 37 100.0 35 ..................................... CGTCTGGGAGTCCGCCGATCGCGTCCGTCAATTCG 3961556 37 100.0 37 ..................................... GCGGCACTCCCGACGACGATCGCCGTCATAACCCCCA 3961630 37 100.0 36 ..................................... GAGAAACCCGTTCTCCCCAAGTACGGAAAAGATCCT 3961703 37 100.0 34 ..................................... CTTTTACCTTGATTTTCCCAAAGCCGGGCAACGT 3961774 37 100.0 35 ..................................... GCATCGGGCGATGGAACCACCATAGACGCACCTCG 3961846 37 100.0 35 ..................................... TAAAATTAAATTCCGGCTCTCCATTTCGGATAGAA 3961918 37 100.0 33 ..................................... ACCCAAACCTCGCCAATCCCTTTACTTTTCAAC 3961988 37 100.0 35 ..................................... GTCTTCCGGGATTTGACGGGGTTTTTCGAGGGTGA 3962060 37 100.0 36 ..................................... CGGTATCAAATCCAAAAAGCAGGAACTCGCAAAAAA 3962133 37 100.0 34 ..................................... GGTGGCGATCCATACCACTCCCTCGAACACCTGA 3962204 37 100.0 34 ..................................... TCAATGCAGCGGCGATCGCCTTCGATCGAGACGC 3962275 37 100.0 35 ..................................... CGGCAACGTGAGCGCCGCCACTTCCCAATCGGTTA 3962347 37 100.0 36 ..................................... AAAAACACTATTAAAAATCCCTGACTGTTTCCCTTT 3962420 37 100.0 35 ..................................... GGGCGAACTGACAATCGGGGGCGCTCCTGCGCCCG 3962492 37 100.0 38 ..................................... AATTCCTTCAGTTTGGGCTATCGACAGAAAACGCGAAA 3962567 37 100.0 33 ..................................... GTGTTTGTGTCGATATTAACCAACACCGACCCC 3962637 37 100.0 38 ..................................... TTCTACTTGGAAGAACTTTGATTTTTCCAAGTATTTTT 3962712 37 100.0 35 ..................................... TATTTACCGTTGATCGGCCCTTCTATTTGCATCGC 3962784 37 100.0 25 ..................................... AACTCGCAACTATACTTTGCATCGC Deletion [3962846] 3962846 37 100.0 39 ..................................... GAGATCTACAACCGGGACAAACGGTTGAAAGAGGAGTAC 3962922 37 100.0 36 ..................................... CTCGATGCTTTTTGGGCGACTTTAGCTGATACCCAA 3962995 37 100.0 43 ..................................... GAGAACGATCTCGAGGCGGGCAACAAAATTATCGATCACCTCG 3963075 37 100.0 35 ..................................... AATCCCAACACATCTCCACGCACCCACCGAGACAA 3963147 37 100.0 37 ..................................... GAGAACGGTTAATACCATGATTCTATGTCTTCCTCGC 3963221 37 100.0 35 ..................................... GATCGCGACGGACGGCTCGGGTTTGGCGATCGGCG 3963293 37 100.0 35 ..................................... TTGTCCGGGCTTAAGTGAAACCCGGACGCGGCGAT 3963365 37 100.0 36 ..................................... GGGACGTTGGATGTGGGGCGTTCCCGCGAGGCGAGC 3963438 37 100.0 35 ..................................... TTTATACTGAGTTTTTATATACTGCGGTCTCCCGA 3963510 37 100.0 36 ..................................... AAGGAGAGTAAATCATATCCGGGGCAACTTACCCGG 3963583 37 100.0 35 ..................................... GTCGTCGAACGTATGCTCGCCCACAAATAACTCGC 3963655 37 100.0 36 ..................................... GGGTATGTGTTGGTGAGATAGTTCACACCAAGGATG 3963728 37 100.0 36 ..................................... ATTACGGACGTACACCGCCTCGAATCAGACCCTTAA 3963801 37 100.0 35 ..................................... GAAACGCTTATCTCTTATGGTGTCGTCCCCAACGA 3963873 37 100.0 34 ..................................... AAGGCTCAGCGTCATCTGTTGGGCGTCCGTATCG 3963944 37 100.0 36 ..................................... GAGTTCCGTCTGTTTGGAAGCGCAACCACCGAGGAT 3964017 37 100.0 37 ..................................... ATCAATCGCGATATCCGTGTATTGGCGAGAATATTCT 3964091 37 100.0 33 ..................................... GGGATATTGCCATCTGAAGCGTCGTCGTTTTCC 3964161 37 100.0 36 ..................................... AGCTCTAATCTGTAATCGGGCTGTAACAGTTACAAA 3964234 37 100.0 34 ..................................... GTCAATGGCTTCCGTGTTGGCTTCGGAGAAAAAG 3964305 37 100.0 36 ..................................... TCGAGATGACTGTTGCGTCGATCGTTTGCGCGGTTG 3964378 37 100.0 33 ..................................... AAGTAGTCGCGTCCGACCTTGAATTTCCGCCCT 3964448 37 100.0 35 ..................................... GAGATCGCTGTTCATACCAGCCCCGCCGCCATGCG 3964520 37 100.0 35 ..................................... GCAGGAACTAACAAGCATCGAATTTCCCTTTACAA 3964592 37 100.0 38 ..................................... GATCGGGATTTCTTCGCTAAGCGCCTCGAAAATATCCT 3964667 37 100.0 36 ..................................... CCGTATTTAGCCAGTATGGAGCTTATCAGGACGGCG 3964740 37 100.0 35 ..................................... AAAATTCCCCCGATCGCCAAGCCGAAACCGACACC 3964812 37 100.0 34 ..................................... AGGATTGTACGAAGGAATCCCGAACAGATCGAAC 3964883 37 100.0 36 ..................................... CTATCACTCCTGCGATGGCGGTATCGACACCGCAGG 3964956 37 100.0 41 ..................................... CGATGGATGGCAGAGCGTCACCTTTCGATCGATTACGCCTC 3965034 37 100.0 36 ..................................... CGGTTGTATGACGACACGAAGGCTGAGATTGGACTC 3965107 37 100.0 34 ..................................... GCGGCATTTATCCTCGTGCATGGGATGCGAACGG 3965178 37 100.0 34 ..................................... AAAGACGATCGAACTCGATCGCCACGAGCGCATC 3965249 37 100.0 34 ..................................... GATCGAAACTCCGAGATCTGGAATCGAGCGAGAC 3965320 37 100.0 34 ..................................... GTAAAACTCCGAATCTGGTGACGGGGCGGGTCGA 3965391 37 100.0 35 ..................................... TTTTAAGTAGATCCTTGAGCGAGTATCCTTCTCTC 3965463 37 100.0 38 ..................................... GGCTGAAATAGGAGCGTTGGGAGTTTCGAGCGCATCGC 3965538 37 100.0 36 ..................................... GGTGTTTCTCTCGGGTTGGGGCACGGGGGGGCGATC 3965611 37 100.0 39 ..................................... CGATTCCGGTTCGGGGTATTCGGTATCTGCGATATGCGA 3965687 37 100.0 34 ..................................... GGCGACCACAGCCAGATCGACAACTGAAACGGGA 3965758 37 100.0 36 ..................................... GGATGTTTGAGTTTGGCGAGAAAGATCTCGATGAAA 3965831 37 100.0 35 ..................................... GAGCTTCCGATATTGTTGCGTATTCGGATCGTAAG 3965903 37 97.3 35 .......A............................. CGATCGCCCCTGTCGTTGAGAGTCCGGCAATCGCG 3965975 37 100.0 34 ..................................... GAAATGCTGGAGCTTTACGAAGCTCCCAACCGGA 3966046 37 100.0 34 ..................................... GAAGCCTTCAAGCTTCGTGGAATGATGCTTATCG 3966117 37 100.0 33 ..................................... AGAAACTTCATCAGTCCGTGAGCGTCAGGCTTT 3966187 37 100.0 37 ..................................... CGATTGGTTGGGGTATGTGTTGGTGAGATAATTCACG 3966261 37 100.0 37 ..................................... AATTTTTGAAGCCGCAAAATCGATTTTCGGAGAAGAT 3966335 37 100.0 34 ..................................... CCGACAATGGGACGCCAGAATACGCGGCTTTTTC 3966406 37 100.0 37 ..................................... GTGAAAATCTCGAACCTTGTCCCTGACTTCGACGGCG 3966480 37 100.0 33 ..................................... TCGTGAATAAGTTCCCCCACAACGCCAGACACC 3966550 37 100.0 37 ..................................... GTTCTTGCACGGCAAGGTCTAGCAAGCGATCGACCCC 3966624 37 100.0 36 ..................................... ACCTGGGAGGGCATCGATCGTGACGCCTGGGATTGG 3966697 37 100.0 42 ..................................... CAATTTCTTCGACACGAACGGCGGTTTGCTGCCTGCGATCTC 3966776 37 100.0 41 ..................................... TAGACAGTTGCGAAAGCATTGCCGAGGAATTCCTGGCTCAA 3966854 37 100.0 39 ..................................... CTCCTATTTAACAACACTGAGAACACGAACGGACTCCCA 3966930 37 100.0 38 ..................................... ATTCAGTGTTGCGTGTTCGGCGGGTTTGATTTGAATGC 3967005 37 100.0 41 ..................................... AGCAATCGGGCAATTTGCGGGTGGATTGCCAGCGCTGCCAG 3967083 37 100.0 35 ..................................... GAGCAATTCCGACCTCGGTTCCGCCGCGTTGTGAG 3967155 37 100.0 38 ..................................... TCGTCGTGACACAGTAACCCCATTTTTGAGGACGTCTC 3967230 37 100.0 33 ..................................... GGAAGGCTGAACTCGATCGCCCCGTGTTCGAGC 3967300 37 100.0 41 ..................................... GTAAAAGCTGAGAACCCGGACACTGATAACGATACGTTCGA 3967378 37 100.0 36 ..................................... CTCAAGGGAAAAAGGACGGGGTGGCGATGCACCTCG 3967451 37 100.0 39 ..................................... ACACGAGTCGGATACCCGTTCGACCCATGAATTTCCAAA 3967527 37 100.0 36 ..................................... AGGGCGAGGCAGCGCTTCACTTTGCCGTAGTCAACT 3967600 37 100.0 38 ..................................... TGCGACCGTCTCGCCCGGCGGCGACAACTGCCGACAAT 3967675 37 100.0 35 ..................................... ATTTTGAATAATGTCTAGTTGATTTTTTGCGAGAG 3967747 37 100.0 33 ..................................... CTACCAAGCTGGGACGAACATCAAACCGCCATT 3967817 37 100.0 36 ..................................... GGGCAAATCCTCGCCGATCGAGATCGACAGCGAGAA 3967890 37 100.0 34 ..................................... GAAGCATTTAATGCACAAGTCCAGCTCGGGGAAT 3967961 37 100.0 36 ..................................... CGAGTCAACGGACTTTGGTTTGACGGTGACGACTGG 3968034 37 100.0 34 ..................................... AGAGAATTTCTCTCGTAAGGCTTCGAGCGCTTCC 3968105 37 100.0 36 ..................................... AACTTCTCGCTCTTCTTCCTCAGTGAGCGATCGCAC 3968178 37 100.0 36 ..................................... TTTCCTCAAAACCGATCGCAACTGATGAGTAGCGGA 3968251 37 100.0 35 ..................................... CGAGTTGACAATTACTGCCTCGACGGGTGGGACGG 3968323 37 100.0 43 ..................................... AAGAGCGGGGTGTTCCACTCGTCTGAACTGACGCGGTAACGAA 3968403 37 100.0 40 ..................................... TTTAACGTTTTACTCGAGTCGTTGCGGCGCACGTACCGCG 3968480 37 100.0 34 ..................................... GAGACCTCGACGACAACACCCTCGATACCGAGAT 3968551 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 258 37 100.0 36 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : AAGCGCCGCACGAAGATTCATAAGGTATTGAAGTCTTATGGGGAGTGGATGCAGTACAGCGTGTTCGAGTGCGATTTGACGGATACGCAGTACGCCCGTTTGCGGCGGCGGTTGCAGAAATTGATTCAACCGGAAACCGACAATATTCTGTTTTATTTTTTGCGCGGGAAGCATCATGGAACCGTCGAACGGATTGGCTGTCCGCCTCCGAGGGATACGACAGTGTTTTTCTGTTGAGTTTTGTAACGATTTGCGCGATCGGGAGGGTGTTTGAGGGAGAGGGTGAGAAAAACAGGCTGTATGGCTGATGGAGCGAGGGTTTGGAGCGCTGGCGGCAAAGGGGCGATTCGCGCAAACGCTGGATGGCTTATGGAGCAAGGGTTTTCGGAGTTGAGGGAGGGGTAATAATTTTGTTTCTGGCTCGATCGATGCTATTATTAGGGGGATTCGCGCAACTGAACCTTGAAAACTGCATAGTATCTAGGTTCTACGGTTGGGCC # Right flank : CATTGCGCCAAAGCACTCAGATCGGCGCGGTTAGCGGTACTTAAACAAATTTCAAGCCCAAACCAAGCCAAAACGCGCTTTGTGAGCGGCAAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTCAAGTTGACGATAGAGATGAGGGGTCATGATGCTGATGTGCTAGTTGAGGAACTCGAACATCGCATCTGACCCCTCTTTTTGTCTACCCCCTTTTTCTCAAATCCACTCCCTCTCTCACTTTCAGGAGTTTTCTGCACCACCAAGGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACAGACTTTTTTCTAGGGAAAATCTAAAAGTCTTACAATGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACCTCAATCGACCTTTATCCAAGCGAAACGACGTATCGTTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 3968934-3972645 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 3968934 37 100.0 37 ..................................... AGACTTTTTTCTAGGGAAAATCTAAAAGTCTTACAAT 3969008 37 100.0 35 ..................................... CTCAATCGACCTTTATCCAAGCGAAACGACGTATC 3969080 37 100.0 39 ..................................... AACGATCTCCCCGCGACAGTATCGCGACCGCCGAACCTA 3969156 37 100.0 35 ..................................... TTGCCTCGAACAAATCCGTGAGATTTTCCCAGACG 3969228 37 100.0 35 ..................................... ATTTCAAGGCAGCGCTGTACTTTTTTGTAGTCTAC 3969300 37 100.0 35 ..................................... GAGCTTTCATAAGAAAAAAAGATGAGAGATGAGAT 3969372 37 97.3 36 T.................................... CAGCAGCAAAAGACGGAGAAGTAAAAACGACCCAAA 3969445 37 100.0 36 ..................................... CGATTTGTTCCGCTACAGGCAAGAAACTCTATCTCG 3969518 37 100.0 35 ..................................... GAGATCGGCGTCGCTCATGGCTTCCGGCTCTACCG 3969590 37 100.0 34 ..................................... TTTTACGACGAACTGGCCAGGGCGCGAATGCCGT 3969661 37 100.0 35 ..................................... AGACACTCTAATAACGCCTTGATTCATCTCCTAAA 3969733 37 100.0 34 ..................................... TACGGCCATCGGATTCGCGATACTCGCCGCAAAC 3969804 37 100.0 38 ..................................... ACGCTTCCACTACGACGAACCCATCAACCACGTCAAAG 3969879 37 100.0 37 ..................................... CAAATTTGCTTGTTATCCTCAATCCCGATTTCCCCTC 3969953 37 97.3 34 .......T............................. TAAGATGGGTGCGTACTTAGAAACTTTAGGCGAA 3970024 37 100.0 39 ..................................... GAGTTCAATCGATAATATACAACAACTGCCCCCGCTGAC 3970100 37 100.0 35 ..................................... CTCTAATGGGAGAGGATTGGCATTCTCTTTTTCAA 3970172 37 100.0 34 ..................................... CTTTTTGGGGAAAGTGTAGGAGACTAACAAGTAA 3970243 37 100.0 34 ..................................... AATTCTGACGGCGGGAAACGACCACACAACGACT 3970314 37 100.0 35 ..................................... TCGAATGGGGTTGAAGTGATCCGCCGCATTGTAAC 3970386 37 100.0 38 ..................................... CGGAAGCGGGGGAGGATCTGACGACGCCCCCAATGCAG 3970461 37 100.0 36 ..................................... GGGATGAAGGCCCTCGCTTCCTCTCCTACGACTTGA 3970534 37 100.0 37 ..................................... CTCGAATACCAGGCGGACGGACTGCTTTACACCGCAC 3970608 37 100.0 44 ..................................... GCCGAACCATCTACGTGAACGATTTCGACGTAGCGCCCCGCCCC 3970689 37 100.0 36 ..................................... AAGGAAGATATCGAAGAATTGTACGGCTATCAAATC 3970762 37 100.0 43 ..................................... GACAGAGACAGACGCAATGAGGACGGCGATCGCCACAGCCAAG 3970842 37 100.0 34 ..................................... TTGATGTAGTCGAAGGGAAACGACCACGGGTCTA 3970913 37 100.0 36 ..................................... ACTGATAATACGTGGGGCGAGTTCTCCTTCTCCACG 3970986 37 100.0 37 ..................................... GACGGTGCGATCGCCCGGACATCCGACGCCGCCTCGG 3971060 37 100.0 36 ..................................... AGAAGCTACCCGGAACGTTGTCGGGGTTCAGCTCAG 3971133 37 100.0 36 ..................................... ATGGGGTTATCTGTTGTCAACCCCCACGGCGCTCCG 3971206 37 100.0 38 ..................................... AATGCGAACAACATTCCGTTGACGGGGAAGTCCGCCTT 3971281 37 100.0 35 ..................................... CAATTTCAGGCTCGGGTTCAATTTCAGGCTCGGGT 3971353 37 100.0 36 ..................................... GAATCCAGCAACATCGGTACTGTAGACTCCTTCGCC 3971426 37 100.0 36 ..................................... GTTGGCTGCAACCTTCCCCCCATACCATTCAGAGAA 3971499 37 100.0 36 ..................................... TGCCGATCGCCGACGCCAACTCAGGATTACTTCGAG 3971572 37 100.0 34 ..................................... GGGATTATCGACTTGCACGAGAAACCGGAGTTGC 3971643 37 100.0 44 ..................................... TCGTCTTTCGGTCGTGGTCGCGGCGCGTTTGCGGCTCGGTCGGT 3971724 37 100.0 39 ..................................... GTTTAGACGATCAAAACGTATCAAATATACAAGATAAAC 3971800 37 100.0 37 ..................................... TTAAAGTATTGGAGAAAGTATGCTAACAATAGATCCA 3971874 37 100.0 34 ..................................... TAATAGTTACTTTATACCCAGTTGGAGAAGTTGA 3971945 37 100.0 37 ..................................... AAGCTCCTCCACTGCGATAGCTTTCAATTCCGCGATA 3972019 37 100.0 36 ..................................... TTGTTCTAATTGTATTTCTTCATTTATTCTATTTTT 3972092 37 100.0 40 ..................................... ATTGAAGGGCATCTGAATCGATAGCCACAGATAAACCTTT 3972169 37 100.0 34 ..................................... GATAAAGTAAAGAATGGTCTATGGCTGATTCAAC 3972240 37 100.0 39 ..................................... ATAAGCAGACTTTTGATAACCAAGCAATATTTATCAAAG 3972316 37 100.0 35 ..................................... GGCGTTGGCGATCGCGATCGGCGATAACCTGCCCG 3972388 37 100.0 37 ..................................... GTCGAAGGTTACGGTTTGCACTGTCACCACAGCCCGA 3972462 37 100.0 38 ..................................... TGGATAAAGCGGTTCGCCGCGCCCCCAAAGGCGGGGGA 3972537 37 100.0 35 ..................................... TCTTTGGCATCGTTCTAACTCCTAACGATGCTTTA 3972609 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 51 37 99.9 37 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : TGAAACTTTAACGTTTTACTCGAGTCGTTGCGGCGCACGTACCGCGGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACGAGACCTCGACGACAACACCCTCGATACCGAGATGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACATTGCGCCAAAGCACTCAGATCGGCGCGGTTAGCGGTACTTAAACAAATTTCAAGCCCAAACCAAGCCAAAACGCGCTTTGTGAGCGGCAAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTCAAGTTGACGATAGAGATGAGGGGTCATGATGCTGATGTGCTAGTTGAGGAACTCGAACATCGCATCTGACCCCTCTTTTTGTCTACCCCCTTTTTCTCAAATCCACTCCCTCTCTCACTTTCAGGAGTTTTCTGCACCACCAAG # Right flank : CTTTGGGGTCTTCGCAAAACAAGGTGATAAGAAAAATTTATTAAGTAAAGCAAGACAGAAAGCGCATTCGCATATTTTCAAAATTTATAAAGCCATAAGCTTGACGCTTTATCAGTTTAAGACGATTATTAATACCCTCCATAACACCATTGGTTGTTCGGCTCAAGAAATAATTACATATTGTGTTAAGATGATTGCGAATTGTCTTGACAGCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCAACTTCCTCTTCTCTAAAGCCTAGCTGCAAAAATATTGCTTCGCGTTCCCTGACCACGCTTCTCACTCTTACTTTGGGTAAGTTGATTAAGTCTTCTACAAAAAAGTTCATCTTTAGATCCGCCTGCATTTGTTTTCTATTATACTATTATCACCTCAAACTCCGAAGACCCAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 7 3973177-3973652 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================= ================== 3973177 37 100.0 36 ..................................... TTTTTCTAACGAGCGATCGCAACAGATCGAGAAAAC 3973250 37 100.0 36 ..................................... CGCCGAAAGTTCGCCGAACCTTTCAAGCAGCGCCGA 3973323 37 100.0 38 ..................................... GCCACTGGGGACGAGTAGCTTTTCAAGTAGATAGTCGA 3973398 37 100.0 35 ..................................... TTTGACGGGTTCGATCGCCAATACCTTCAGGCGAT 3973470 37 100.0 109 ..................................... TGGGTTAACGTCACCGGCTACCGGCTCTGTAAGGCTATATAGATCTGATGTACTACTTCAAGGGATTGAAACTGGGTTAACGTCACCGGCTACCGAGTGGGCGATCGCA 3973616 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================= ================== 6 37 100.0 51 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : AAAATTTATTAAGTAAAGCAAGACAGAAAGCGCATTCGCATATTTTCAAAATTTATAAAGCCATAAGCTTGACGCTTTATCAGTTTAAGACGATTATTAATACCCTCCATAACACCATTGGTTGTTCGGCTCAAGAAATAATTACATATTGTGTTAAGATGATTGCGAATTGTCTTGACAGCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCAACTTCCTCTTCTCTAAAGCCTAGCTGCAAAAATATTGCTTCGCGTTCCCTGACCACGCTTCTCACTCTTACTTTGGGTAAGTTGATTAAGTCTTCTACAAAAAAGTTCATCTTTAGATCCGCCTGCATTTGTTTTCTATTATACTATTATCACCTCAAACTCCGAAGACCCAAACTTTGAGCGAACAATGTCGCCGAGGTTCCGTGAC # Right flank : CAAGAGCTTGTCGCGCCGCCGCCATTCCTTCGGGCGTCCGGTGTTGAAACCCAATAAAATCCCGGGTGCATCCCACTTTTGCAAAAACATCAGTTTTGGGTGGCAAAATTCCCGATTAGCACTTCCGGTATAAGATCCCCGGCATCTCCAAGATGCCGGGGATCTGGAAATTGAGTGCGCCCAATGGGAGCATCTAGTTAAGGCAATGAGTAGAAATACGCATTGACAGAGGTTCGAGAATAGAGAGGAAAGCATTCCCCAGTCGTCAATGACCCCAGAAGAACGTCAAAAACTCAAACAAGCTGCCGAGACGATCGCCGATATCCTGTACCAAAATACCCCTAAAGAGAAAGTCCAAGACTTCGAGAGCATCGAGCTGAGCCTGCGCGACCACTGGCTCGAAACCCTTGGCCCGGAACTGGCCCTATTTTTTTGCCCAAAGCAGCCAGACTCGTAGCGGACGAGAACGAAAAATTAGGAGCTGTATTGGACAAGTCTCC # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-1.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 8 3977067-3974660 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 3977066 37 100.0 35 ..................................... TGAATCTAGATAAACTCCGCTAGAAGGAATCCGAT 3976994 37 100.0 34 ..................................... TTCAAGCTCTACGGTGGTATCAGGAAGACCACCA 3976923 37 100.0 33 ..................................... TATTACAACGCTCGATAGAACCTCCCACGTCCA 3976853 37 100.0 34 ..................................... GCGATTGTTGACGGTATTCCCACCCCCACATACA 3976782 37 100.0 45 ..................................... AATTGCCTGGTTGGATAATCAGGAGAAGTTCGAGGAACTGGGGCC 3976700 37 100.0 36 ..................................... CCACCCTCCTTCAACCCCAATCGACTGACACATTCA 3976627 37 97.3 36 .......................G............. GAGGCAACCCGATATCAACCCGATACGCCTGCAAAC 3976554 37 100.0 38 ..................................... GGGTTGAAATGGAGCATTCACCCACTGTCCTGGCTCGA 3976479 37 100.0 37 ..................................... ATCAGATGCCCCCCGCTCTTGGCAGAAATCTTGCAGC 3976405 37 100.0 40 ..................................... GCTGTTGACGAAAATACCCAAGGATTTCACCGTCGTCCAA 3976328 37 100.0 42 ..................................... GGAATCGATCCTCGTCAAGCGACAAGGGAAAGCATCGCTGTT 3976249 37 100.0 37 ..................................... TTGACGATTTCTCGCCAGGGTTCCTACTCCCTTTCCC 3976175 37 100.0 34 ..................................... ACCGCACTCACTGACATCGCAACCGCTTTTTCCA 3976104 37 100.0 35 ..................................... TAGCGCGGCACATTCTTGGGGGGGGGACTCTTCCC 3976032 37 100.0 34 ..................................... ATCGATTAATTCATCTAGCCACTTTCTGGCTGCG 3975961 37 100.0 35 ..................................... TCAATAATAACTCACGTGAGTTTATTTATCAATAT 3975889 37 100.0 40 ..................................... GATTAACTCTTCCTGAGCAAAGACGGTGAGCTTGCCGTGG 3975812 37 100.0 34 ..................................... GCATTAAGAGAGCTTCCAGTAGGGTCAAAAGTAG 3975741 37 100.0 39 ..................................... CTGCCCGATTTTCTTGGTGGGATAAGATTGTAGATGAAG 3975665 37 100.0 35 ..................................... CGATTACCATCGCGGCGTAGTTCGGATCGGTGGCG 3975593 37 94.6 36 .......................TG............ TGTCGTGGGTTTTGTAGGCTCTACGGGGGTAATTTT 3975520 37 94.6 37 .......................TG............ GAGTTGTTGAGCAATCCTTCAACGCCGTGGCGTTCAG 3975446 37 94.6 42 .......................TG............ GTGAAGCTCGATCCGGACAGAAACGCGGGGACGTTGGCTCAA 3975367 37 94.6 37 .......................TG............ GAGTTGTTGAGCAATCCTTCAACGCCGTGGCGTTCAG 3975293 37 94.6 34 .......................TG............ ACGCGGCGACCGATTAAATGGTTGTAGACCTCGG 3975222 37 94.6 37 .......................TG............ CGATCCACCAATTGGCATCTGGTGTCTGAAGTAAATC 3975148 37 94.6 46 .......................TG............ CTTCAAAAAATCGTTCGTCCACGGGTTCACTGACCCCAAGGCAAGA 3975065 37 94.6 40 .......................TG............ AGAGTACGCCTTCTCAGCTTGCTGATAAGCCTTGGCCAGA 3974988 37 100.0 37 ..................................... TGAATCGAAGCGTATCCATTGAGAATTCTCAACGACT 3974914 37 100.0 36 ..................................... CAGTGGTGGCTCACTGGACGATTTCATTTTGCCTCG 3974841 37 100.0 35 ..................................... AAATGTCACACAGTTTTTGACGACCCCGAAATCCT 3974769 37 94.6 36 .......................TG............ CAGGAGTTCTCGCACCGTGTCGTCGTAGTCGGCGAT 3974696 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 33 37 98.4 37 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : CTTCAAGGGATTGAAACGTAAGCAGCGAGGCGGCATTCATAGAGAATGTCGTAGTGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACTGCTAGTTGCTCAAATGAGCGACCAACATTTGGTAGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACTATCAAGCTCGACAAAAGTAGGACGGTGAAAAGACTGTTGAAACCCAATAAAATACCGGGTCTTCGGAGTTTGAGGTGATAATAGTATAATAGAAAACAAATGCAGGCGGATCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCGCTTTCTGTCTTGCTTTACTTAATAAATTTTTCTTATCACCTTGTTTTGCGAAGACCCAAAATCCCTTCAAGGGATTGAAACCGGTAACTGATTTTCGTACAGTATCTCATGACT # Right flank : GCAACAATCGCGTCGTTTACCGTGTCGATAACGGTTGAAACCCAATAAAATCCCTGGGTACATCTCAAAAATGTAAATTCATCGAATTGGGCGCGGGAGCATCTATTTTAAGTAATGAGTAAAAATACTTAAGCCAACTCGCGATTGAGATAAGCACAGCGTAAACGCAACATGGGATTGACATTCTCTCGATTCCACTGCGCTCCGGAAATCTTCATTCTCAAACCAATGCGTTTAATAGTCGATTCAACTTCCCCCGAACCAATGACCTGGCCGTTTTCCTGGCGTTGGGCATAATTCGGTAAGCGATGAGAATGGCGCTCTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAACGAACAACGTTCTAGATGAGGACTCACTCGTGTGCGGGGCTTAACCTTTAAGCGTTTGGCTTGATTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : GTTGAAACCCAATAAAATCCCTTTGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 9 3978817-3977403 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3978816 35 86.5 35 TCC.......--......................... TTTCTTTGACTACAATTTTGCCATTCATTGAACTA G [3978812] 3978745 37 100.0 35 ..................................... CGACATGGTAGTTAACGGCGAGCATGAAGAGTATG 3978673 37 100.0 37 ..................................... ATCGCCGTCAAACTCGATGTAACTGCACTTCTCCAGT 3978599 37 100.0 34 ..................................... TTCTGAAAATGCCGAGAATTCAAAAAGATTCCGG 3978528 37 100.0 34 ..................................... GCTCCTTAACTACACCACCCTGACCCGGAAAGCG 3978457 37 100.0 34 ..................................... TTGGTTGTCTTTTTGTACGTTACCGTGCTATAAT 3978386 37 100.0 35 ..................................... TCATGGTTCTAACTAACTCCTTAGTAAACGTTTTT 3978314 37 100.0 39 ..................................... CTTACCTACCGCCGCATTTGCCGCCGAATCATCTGCCAA 3978238 37 100.0 35 ..................................... GCTTATCTCCTGAGATGCGCCAGTTGATTTCGCTA 3978166 37 100.0 36 ..................................... TAAGAATCACCGGATAAAAGGTAGATTTCTAACATT 3978093 37 100.0 35 ..................................... GCAATTTTACCAACTAGCGAGGATTTGCCACTCCT 3978021 37 100.0 35 ..................................... TCTGGCGTGAGCTGTTTTAGCAAAGTCGTTGCACC 3977949 37 100.0 39 ..................................... GTTTTTTTGACGATTTGCAAGCTTGAAAAGATTTCTCGA 3977873 37 100.0 35 ..................................... TCTGATATCCGGTGACGGCACGGCGCAACAGAGAC 3977801 37 100.0 34 ..................................... AAGGGGGTGGAGAATACAAACTCGAGAGTGGGGA 3977730 37 100.0 36 ..................................... TGTAACGCCGCTGCGATCGCCGCCTTCAACCGCGAT 3977657 37 100.0 34 ..................................... GTAACTTCAAGGATGGGAACTCCTAATATTGATA 3977586 37 100.0 38 ..................................... GTAAGCAGCGAGGCGGCATTCATAGAGAATGTCGTAGT 3977511 37 100.0 35 ..................................... TGCTAGTTGCTCAAATGAGCGACCAACATTTGGTA 3977439 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 99.3 36 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : GGATGCTGAAAAACGTCGCCAAATTCAAGCTCACGCTCGAGCGATTGCCGCTCTACTCTACGAAGGAAGTGACCCAGAAGAGATTCAAACCCTATCTGGCATCGAAAAAACCGTCCGTCATCAGCTATTAGAACACGTTAGCCCAGAAGTGGGAAATTTTTTATCCAAAACAGCAGCGGCAGCCAAGGCGGAAGAAACGGACGGTAAAAGTCTTCTCGGTCGCTTGAGTCTGAGCGAGCCACAAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCTAAAGCCTAGCTGCAAAAATATTGCTTCGCGTTCCCTGACCACGCTTCTCACTCTTACTTTGGGTAAGTTGATTAAGTCTTCTACAAAAAAGTTCATCTTTAGATCCGCCTGCATTTGTTTTCTATTATACTATTATCACCTCAAAC # Right flank : TATCAAGCTCGACAAAAGTAGGACGGTGAAAAGACTGTTGAAACCCAATAAAATACCGGGTCTTCGGAGTTTGAGGTGATAATAGTATAATAGAAAACAAATGCAGGCGGATCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCGCTTTCTGTCTTGCTTTACTTAATAAATTTTTCTTATCACCTTGTTTTGCGAAGACCCAAAATCCCTTCAAGGGATTGAAACCGGTAACTGATTTTCGTACAGTATCTCATGACTGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACTGAATCTAGATAAACTCCGCTAGAAGGAATCCGATGTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAACTTCAAGCTCTACGGTGGTATCAGGAAGACCACCAGTTGAAACCCAATAAAATCCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 10 3980453-3979544 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235958.1 Baaleninema simplex PCC 7105 Gei7105DRAFT_GPC.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3980452 37 81.1 37 CC.A.GTA..G.......................... GAATTCGTTGTAATCCTTAATTGATATCAATTATGAA 3980378 37 100.0 34 ..................................... TGGCCAACGAACTGGCATTTGTAAAAACTCCCGA 3980307 37 100.0 33 ..................................... CAATTGAATGAGAGCCATTTTCTTCTCCTTTTG 3980237 37 100.0 32 ..................................... CTCGGTAGAAGAATACAACGGCGAAACGCCTG 3980168 37 100.0 37 ..................................... AGCACCCAGCCCATCTCGTTAAGGATAGGGGCGTACT 3980094 37 100.0 34 ..................................... GTCCCGACACTATCGGGAGGCTCTATCAACCTGC 3980023 37 100.0 40 ..................................... GCTGAAGCTATCACCAAATCATCATCCGGCGGTGGCAAAG 3979946 37 100.0 32 ..................................... CTTAAAGCTTTTCGGAACTTCGACCGGAAAAT 3979877 37 100.0 35 ..................................... CCTTGCGCGTGGACGCCGTGAGCTTCCAGTTCGGC 3979805 37 100.0 38 ..................................... TGGGCGAACGCTGGAGCCGGGTCGCGATTCTCGACTAA 3979730 37 100.0 35 ..................................... GCGGTAGTTCTCCAAGGGCGATCGCTGTGACTGGA 3979658 37 100.0 41 ..................................... TTCCTGCCGTGTCTGTTCCTTCTTTCGTTTCCCGTCGTTCT 3979580 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 98.5 36 GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Left flank : TCTTGCCGGATGCACGGGAATTTCCAATTTTACCTCTTTTTCGGGTTCTCGAAGCCACGTCAAGACTCCTCTAAGCCTTACGTCGTAAGCTTTTCACTTCTTTTCAGCAAG # Right flank : TGAAGAAGTTAGGTTTGAAGATAGAACAGAGATTTACACTGAGTTGAAACCCAATAAAATCGGGTCTTCGCAAAACAAGGTGATAAGAAAAACTTATTAAGTAAAGCAAGACAGAAAGCGCATTGGGTGCATCCCAGTTTTGCAATGAGTAAGAGTACTTAGAGCGGTTTGAGAGAAGGGAGTTAAGCTAAAAGGAGTTGCCCAAGTCGGAGTCAAGCCTAGCTCATGGATGCTGAAAAACGTCGCCAAATTCAAGCTCACGCTCGAGCGATTGCCGCTCTACTCTACGAAGGAAGTGACCCAGAAGAGATTCAAACCCTATCTGGCATCGAAAAAACCGTCCGTCATCAGCTATTAGAACACGTTAGCCCAGAAGTGGGAAATTTTTTATCCAAAACAGCAGCGGCAGCCAAGGCGGAAGAAACGGACGGTAAAAGTCTTCTCGGTCGCTTGAGTCTGAGCGAGCCACAAGCCNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCCAATAAAATCCCTTCAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //