Array 1 52664-54117 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPB01000018.1 Micromonospora lutea strain NBRC 106530 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 52664 37 100.0 34 ..................................... TACACCCTGCCCGCGCCGCTGCTACGCGACCACC 52735 37 100.0 38 ..................................... TCGCTTGACCCGGAAGACGGCGACGTCGAGTGGAACGA 52810 37 100.0 37 ..................................... CACGTCGCGCAGTGGTCAAACTCGATGGGCCTCCTGG 52884 37 100.0 38 ..................................... CCCGAGTACACCGTGGCGTACGTCGGCACCACCTCGGC 52959 37 100.0 37 ..................................... GGTCCATGCCGCACCAGCCGTGCTCGGGCGGTATCGT 53033 37 100.0 41 ..................................... TTCCCACCACACCACCGCGTATTTGCGGTCGGAGGATCCGA 53111 37 100.0 37 ..................................... GCCCACCTGCCCGGCCCGAACTACTTCCCGGGGTCAG 53185 37 100.0 35 ..................................... GCGGGGCAGGCATGTCACGACGGGGCCGCCTCCGG 53257 37 100.0 38 ..................................... TACGCGCAGGTCGGCGGCGAGGTGGTGCAGGTGACGGC 53332 37 100.0 36 ..................................... GCGGTGGTCCAGGGCAAGGCCGAGTCTCGGCTTGCG 53405 37 100.0 38 ..................................... GAGGCACCGCTCGATCGTCTCGCGGTCGAGCCACGCCA 53480 37 97.3 38 A.................................... CAGCCCAACCCGGTGACGGCTTGGAGCTTCGCCGTGGC 53555 37 100.0 37 ..................................... TGCGGGCAGACGGCCTACATCTGGATCGTCGGCGGGG 53629 37 100.0 39 ..................................... AAGTCCCTCGCCTACCGCTATCCCGAGCGTCTCACCGTC 53705 37 100.0 35 ..................................... CCCAACAACGGATCGCGGTACACCCTCAAGCCGAA 53777 37 97.3 40 ..............A...................... GACGTACCGTACGACCCGGACGGCGCACCCGGCACCTGGC 53854 37 100.0 40 ..................................... ATCTGCGCGACGGTGTTGTTGTTGGCCTGGCACGCGGCGA 53931 37 94.6 38 ..........A...................A...... CTCGTCCATGCGCAGGCAGATGCGGATGCCCTGCACTG 54006 37 100.0 38 ..................................... CCCCTCGCGCCACTGATTCTCATGCGACGCAGCCTGTC 54081 37 78.4 0 ...A..........GT....T....CT........GA | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 98.4 38 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : ACGTGATCTTCCACTGGAACAGGCTCGGACTACCTGCCACCACCCAGGCCACCCTCGCCCATGCGGCCCAGCAAGCCATCTTCGGCGTCCCCGATCCGAACTGGTCAGGCCGACGATGACGCACCAGCGACGGGAGAGAGGAGGTGATGCCCGGGAAGAGCTCGATCGCAGACTCGGTTACAGGCTCGAGCAGGACAACGAGGGCCTCGACTCGGGTCGCCCGGTCACGGAGGATTAGTGTTCGAGGCAACTGTACGGTTGGGCGCTACCAATGGAGCAGTAAGCCCGAGGCCAGGTCGCCCCTGGTGACTCTGGTCGGGCCTCTTACGTCAGCCGCTGAGGCGTGAAGTCCGCGCGAGCACCTGTTGATCTAGGAACCTGGAGTGACCTCGGAATCCCCGGGAGGTTCCGAACCGCAAAATATGGATGAGATGGGTGAATCGGACCGCCTATGGTTGTACGAGGCGTCATCGAATCGCTATTTTCGCTGTTCACGAACC # Right flank : ATTCGGCATGATCAGGCGTCGAAGGACTTCAGCTTACGCACGTAGGCTGCTGAAATCCGACACACGGATAACTTCCTGTCACTGTGACAGTAAGCCTATGGTCGATTCGTGTCTGACGATCGCTGGGTCCCGCCGACCGTTCTTGTTGCGGTGGATCTCGTCATCCTCACGTTGCGGAGCTCCCGCCTGTATGTGTTGTTGATCGAGCGCGGTATCGAGCCCTTTCAGGGTGCTTTGGCTCTGCCCGGCGGTTTCCTTAGCCACGAGAAGGAGGACCTGGTGGCAGCCGCCCATCGAGAGCTTGCCGAGGAGGCTGGTTTGGGGCCGGATCAATTGCACCTCGAACAACTTGGTTTCTACGGAGCGCCCGATCGTGACCCCCGAGGTCGGGTTGTCTCCGCGGCGTACCTGGCCATCGCCCCTCGGCTACCCGAGCCGGTTGCCGGCACCGACGCCTCCGGGGCTTGTTGGATCCCGGTGACGCAGGCGTTAGCCGGTGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 58386-58789 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPB01000018.1 Micromonospora lutea strain NBRC 106530 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 58386 37 100.0 38 ..................................... TACAAAGACCCCCACGCCCTGGACCCCGTACACCAGGC 58461 37 100.0 35 ..................................... ATGCTGAACCCGGACCGGCGTCGGCGGGAGTCGCA 58533 37 100.0 36 ..................................... GTGGAGGCGGCCGACGACGTGACCGTGCTCCGGCCG 58606 37 97.3 37 .................T................... TGCAGAACGGTCCGCGGTCGGTGCAACCTGCACCCGA 58680 37 100.0 36 ..................................... GAGGGCGCGGAGGCCGACTACACGGTCCAGATGGCG 58753 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 99.1 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : GTAAGCGAACCCGATCACGAAGCGCTCCAGCACGACGAAAATGCAACCAAGATCGCAGAGCTGTCGCTCGACGCCGCCGGGCTCAATCACACCCTCCACGTGCTTGAAGGCGTCGCCGCCGAAGGCAAAGAATGGATCAAACACCGCCGCCGCCGAGCCGACGAAAGACTCGCCAGCCTTACGGGCTCCCTGCGCGGGTTACTCGATTAGGCGGCCGGGGACGAACTACCGTCCCCTGCGTGGGTACTCGTACTAGGGGTGGGGGTGACCGCCGGAGCTGCGGTCCCCGGGTCGGTTTGCCTACGCGAACTTTGCTCCACTGCCTCGCTGAAGCCGCTCAACCGTAAGGGACACGAGAGCACTTGTTGATCTAGGAACCCGGAGTGACTGCGGAATCCCTGGGAGATTCCGAACTATGAAATGCGGATTGGATTGGCAAATCGGACCATCTGCGGCTGGAGCAAGCATCATCAAATCGCTATCTTTGCTGTTCACGAACC # Right flank : CATGCGCGAATGGGGCGCCGACGAGTATGGGCAGAAGGCTACGCCGGCTCAGCACGTGCAGGCGCGGATGGGGATCGGTGAACGTGTCTGACCGCGATGACGTCCGGCAGCCCGGAGCCGGGGGAGGGCAGCGGCCTGCTGGCCTGACGCCAGAGCAACGTCGCCGTCGAGCGCGCATCGCCGCGCACGTCTCCTGGGCCAACACCGCCGACCGCGCCGCCCGGACCGCAGCCGGCACCAGAGCCTTCCTTGACCGGTTCGAACGCCAGGTCGATCCCGACGGCACTCTTCCCGTTGAGGTCCGCAACACCATGGCCCAACACGCGCGGAAGGCGTACATGCTGCAGCTGGCTGAGCGATCAGCAGCAGCAAGGAGGCGCCGAGGTCAGGGGAGTGCTCGGACGAGCTGATTGCATTGCCGCAGAGCCGGCCGGCGAAGATCCACGAGTGGTCGCACGGCCGGGGCGGATACCGCTGGATGGTGTTGAGGCTGAACTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //