Array 1 2268067-2268357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072019.1 Akkermansia muciniphila strain Akk2680 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2268067 31 100.0 34 ............................... TAACTTTATGTAAGGCAAAGAATATGGAAGTTTG 2268132 31 100.0 33 ............................... GGGAACAAGGCCAATTTAGCATAGGAGCGGATT 2268196 31 100.0 34 ............................... CGAGCTTGGTTTCCGGCCTCCCTTCCGTCCGTTG 2268261 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2268326 31 87.1 0 .....................A..A....TA | G [2268339] ========== ====== ====== ====== =============================== ================================== ================== 5 31 97.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTGAGGAGGGTTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGTATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2508603-2509542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072019.1 Akkermansia muciniphila strain Akk2680 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2508603 31 100.0 35 ............................... GTTAGTTTTCCTCTGCTCTGAAAGTTGCTTGGCCG 2508669 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2508734 31 100.0 34 ............................... TTTCAGTGCCATATTTTTAGTTTAGTTTAGTTTG 2508799 31 100.0 34 ............................... TCGCAGTACATTAACAATATGTCCCGCTCCGCAG 2508864 31 100.0 34 ............................... TACGCTTTCCCCGGTATCGACGCCGATATAACAG 2508929 31 100.0 34 ............................... TGGAAGCCGGAGCGCGGTATCGTCAAACCAGCTT 2508994 31 100.0 33 ............................... GCCAGGTCCTCCTTACTCTCGATTTTGACGCGG 2509058 31 100.0 34 ............................... GATGTGCGGACAGTCCTCGTATTTGACCCGGATT 2509123 31 100.0 33 ............................... GCCAGGTCCTCCTTACTCTCGATTTTGACGCGG 2509187 31 100.0 34 ............................... GATGTGCGGACAGTCCTCGTATTTGACCCGGATT 2509252 31 100.0 34 ............................... GGCAATAATGTGCCTGCTTGTTTGTGTGCTCTAA 2509317 31 100.0 34 ............................... CAGAAGAGCAGCAGGCCTTTGCCGCAGCCGAAAG 2509382 31 100.0 34 ............................... CAGTTTTTGGCCTGCTCCCTGGCGACAGTCCGCA 2509447 31 100.0 34 ............................... GATGGTGTTGCCCGTCACCTTGGTGTTCTTCCGC 2509512 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 15 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGATTTCAAAATGGCTGTGGAGAAAAAGTTGCTGGACGATGGACCCTTGACCATCTAGCATCAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCCGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTTTCCAATAAAATATAAGGGGGTAAGGAATATGCATCTTGAAAGAGGTTGGCGCAAAGGGCTGTTTGTACCACTAACTTTCAATGCATATTCCCTTCCGCC # Right flank : CTTTGTTGAGCGGGTTTCACGATCCTGTGTTGGCCGTCGCACCTGTAACGTCGCAGCGCATCGTAGAAAAATTATCAAGCATCGTGGAAAAACGCCCTTGAACGTCTGCCCGCTGCATCCCCATTGCAACCTGGTTGCACCTCCCTTGAAAACGGCTTGAACTGGCCTCCCTACTCCCCGATCACGTCCCTGGCGGCCAACTCGTCAAATACGCGAATGAATTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGCCCCTCCGGCCGTGATGCCGCCCAGGGCCGCTCTATATGAAGCGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACCCCCAATGGGCAGCCGGTCCAGAACTGCAAGCATCCGGCGCAACGCGGACCCCGTGAACCCATAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2931155-2929375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072019.1 Akkermansia muciniphila strain Akk2680 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2931154 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2931089 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2931024 31 100.0 33 ............................... TCCTAACACGCTAGCATTTAAAGCGTTATAATG 2930960 31 100.0 34 ............................... AGCGATTTCAATGCACGTCTGTTCCCGGTTTGCC 2930895 31 100.0 33 ............................... CTTGTTTTTCCGCTTGGCAAGCTTTTTCAAGGT 2930831 31 100.0 34 ............................... TTCGTAAAAATCCCCGCGCCGTACCCACCAGGAC 2930766 31 100.0 34 ............................... CGCCGTGGCATTTTTTAAACACTTCACAGAACAA 2930701 31 100.0 34 ............................... TGTTTGGCATGGGGCGTTTTTGCTCTATCCAGTT 2930636 31 100.0 34 ............................... AGGTGCTGACGTGGCATTCTTTCGGCCAGGACGG 2930571 31 100.0 34 ............................... CGTTTTTGGGGCGTCATGGTCAACTTCGTTCCCG 2930506 31 100.0 34 ............................... CCTTCGGAGGCTTTCTATCACCTCGGCCAGGGAT 2930441 31 100.0 33 ............................... AACTTTATCTCCTACCTTCACCCGCATGATGGG 2930377 31 100.0 34 ............................... AGGAAATACCTTGAAAAATATCTCACCGGAGAAA 2930312 31 100.0 33 ............................... CCTGGATTTTGCCAAGGCATCCCCTGTTTCCGC 2930248 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2930183 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2930118 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2930053 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2929989 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2929924 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2929859 31 100.0 34 ............................... ACGCACCCGCGCCTTGTACACCCCATCATAATAG 2929794 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 2929729 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 2929663 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2929599 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2929535 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2929470 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2929405 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 28 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //