Array 1 88512-86300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUS010000026.1 Streptococcus thermophilus strain 13491 202-13491-26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 88511 36 100.0 30 .................................... CTAGGCAATCTTGAATATAACGATATCAAG 88445 36 100.0 30 .................................... GGAAAGGTAGTGATGGACGAGATGGTATTC 88379 36 100.0 30 .................................... ATAATCACGATGACATCATAGGAGGGATTG 88313 36 100.0 30 .................................... TCCTTTTTTGAAACGGTAAACTCAAACGTA 88247 36 100.0 30 .................................... GATATCTATGTGGAACTTATAACCGCTAAG 88181 36 100.0 29 .................................... ACTATTTGGCACCCGTTGGATTCGATTGG 88116 36 100.0 30 .................................... GAGGCTTCACTTGCTAACGAGTTCGTCTTT 88050 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 87984 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 87918 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 87852 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 87786 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 87720 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 87654 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 87588 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 87522 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 87456 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 87390 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 87324 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 87258 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 87192 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 87126 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 87061 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 86995 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 86930 36 100.0 29 .................................... TAATTTCAATATCTTTGAACACTATCAGG 86865 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 86799 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 86732 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 86666 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 86599 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 86533 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 86467 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 86401 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 86335 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 152790-154145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUS010000010.1 Streptococcus thermophilus strain 13491 202-13491-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 152790 36 100.0 31 .................................... CAAATTTGTCAAAATCAAAGTTAATTTTTCC 152857 36 100.0 30 .................................... GATTCAGTGGATGCGTATTACCGAGGAGGT 152923 36 100.0 30 .................................... CCATCTTAACGAGAACATTGGAGAGTTAAA 152989 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 153055 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 153121 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 153187 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 153253 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 153319 36 100.0 29 .................................... ATGGCCTATGCTTAATAAAATATCTTAAA 153384 36 100.0 30 .................................... GCTATACCCTAATATAGCTGAACACGTCAA 153450 36 100.0 30 .................................... AGTGAAATTTAACGAAGTAATGCACAAAGT 153516 36 100.0 30 .................................... TTAGAAAGTGTTTTACTTGCGAGACTAGAT 153582 36 100.0 30 .................................... TCATAGAGTGGAAAACTAGAAACAGATTCA 153648 36 100.0 30 .................................... AAGTCGTGTCAGAAAGATTGCTGACCGTTT 153714 36 100.0 30 .................................... AGATAAATTGCCAGACATGAGACGTTATTT 153780 36 100.0 30 .................................... CCTTAAGCGTGCCCGTGGTTTCACAGCTTT 153846 36 100.0 30 .................................... TGATTTTATATACCGAAAAGACTACGTCTT 153912 36 100.0 30 .................................... CACTTTCTTTATCACGACCTAGATTATCTT 153978 36 100.0 30 .................................... TCAAAGCCTTGTCTGATCACACGAAAAAGA 154044 36 100.0 30 .................................... CCATTTCTATGGAGTTTACGGTGACGTCGT 154110 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CATTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 93349-92222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUS010000018.1 Streptococcus thermophilus strain 13491 202-13491-18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 93348 36 100.0 36 .................................... GCTATCTGGATTTTCTTCCTTGAATTTTTCAAACCA 93276 36 100.0 39 .................................... ACTTACATATTCCAAAATTAGCTCTTTGATGTCATTATT 93201 36 100.0 35 .................................... TGTATTTTCATTTACTTTATAGCTAAAGTGTTTAA 93130 36 100.0 37 .................................... TAACTGCTGTCTTATCTAGAGGATATTCTCTTAAAAC 93057 36 100.0 37 .................................... ATCTTTGTTCAATTTATTGTAAATATTCGACATTTTA 92984 36 100.0 39 .................................... TCATAAGCTGTTGTTTTTTAAATTGATCGTAATAAGTAT 92909 36 100.0 38 .................................... TCATGATATTTATTATCTGCCGAATGATTTGATAAGCG 92835 36 100.0 36 .................................... GCGAATTCTTCTTGTGTCAGGTTATGACGTGCTCGA 92763 36 100.0 36 .................................... AGACATATAGCTTTTGTCAGCATAATAATTATCATC 92691 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 92621 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 92545 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 92474 36 97.2 37 ......A............................. ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 92401 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 92327 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 92257 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 97.9 37 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //