Array 1 342-130 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMX01000034.1 Cronobacter malonaticus strain cro931C1 contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 341 29 100.0 32 ............................. GTTATAGGTGCCACGGATAGAATTTTTATCAA 280 29 100.0 32 ............................. AACAGGAAACGGTTTTCATCAGTACATTGCCG 219 29 100.0 32 ............................. GTTGATGTTACTGAACGCTTTCAACTTAGTGG 158 29 79.3 0 ...................G....CGTTC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 CTGTTCCCCGCGCGAGCGGAGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGAATGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CACCGCCCGTACTGTGATCCATGTCAGCCAGGGGGCTGATAATTAAAACTGAGTTGTCGTATCAACCTCCATGCGGATTCATCTTCTGCGAAAGGAGGTTGTGGCACGGAAGGGGCGCAAACGAATCGGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGAGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2416-2143 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMX01000068.1 Cronobacter malonaticus strain cro931C1 contig68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2415 29 96.6 32 .............T............... CCCAGCCTAACGAGGATTGGGCATTAACGTCG 2354 29 100.0 32 ............................. TGGGTGATGCCAAAAAAGAGCGCCTGGGCTAT 2293 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 2232 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATGAGGAGAGAAG 2171 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAGCACAAAACTGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45-1108 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMX01000043.1 Cronobacter malonaticus strain cro931C1 contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45 29 100.0 32 ............................. GTACATATCTGTCTATCCCACCTCTCAACGCA 106 29 100.0 33 ............................. GCGCCGCATACTCGCAAAACGCTACGCTCCGAT 168 29 100.0 32 ............................. CCTTGCCGCTCTTGCGATTAGCCCGGAGCGGA 229 29 93.1 32 ................GC........... ATCTGACGGTCATCGGTGACGGTATCGAAACA 290 29 96.6 30 ....................A........ ACCATTACACCGAGTGCAATATCAGGGCGC C,G,G [292,296,305] 352 27 93.1 32 ...-.............-........... GGATGAAACCGAAGACGCGCAAAAGCGGCTCG G [365] 412 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 473 29 100.0 32 ............................. AGCGGGAGCTGGCGCGTATAGCGCTGGACTGG 534 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 595 28 96.6 32 .............-............... GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 655 29 100.0 32 ............................. CACACCACATCACCGGCACAAGACGGCGCGCG 716 29 100.0 32 ............................. GATGGGCGCAGCCCGGATGTTGAGCCTTTCTA 777 29 100.0 32 ............................. ATCTGCACTTCTGGCAACGTTTTGGTAATGCC 838 29 96.6 32 ...................T......... GCAATCGACGGGCTTAAAGAGGTGCAGGAGTC 899 29 100.0 32 ............................. ACGGTGGACAGGGTTAGGGGCGATAAAATATT 960 29 100.0 32 ............................. AAAATAACCGAAGGGTTTTTTAAAAGCGGTTC 1021 29 93.1 32 ..A.........T................ TCGTAGTACGCCTTAACGGTTTCGGCGCGGAT 1082 27 82.8 0 ...........-.-...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GGGGATAAACCGTGGTGGCGAATAAACTGCGCGCGATCACGTACC # Right flank : GCCCAGGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTACATCTGATGCAGCGGGAAATGACCGCTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-7] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27585-28041 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMX01000043.1 Cronobacter malonaticus strain cro931C1 contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27585 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 27646 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 27707 29 100.0 32 ............................. GGCACGTTGGCTGCCCGCCGATTATTGCCGTC 27768 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 27829 29 100.0 33 ............................. TCACGCCGGCACCAGACGCAGCGTCAGGTTACA 27891 29 100.0 32 ............................. ACGGATGAAGTCGGGAAGGGTCAGGTCCGCAT 27952 29 100.0 32 ............................. CGAGAGCAATAGTGAATGGGTGCCCGGTCATC 28013 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : AACTGTGAGATTACGCCGTACCTTTACCGTGCGTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //