Array 1 158388-159207 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAE01000004.1 Pseudomonas alcaliphila strain JCM 10630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158388 29 100.0 32 ............................. CCGTCACGGTCTTTACTGATGGCTTCAATGCC 158449 29 100.0 32 ............................. CCCGCGCTTGGCGGGCTTATCGGGATAGTTCT 158510 29 100.0 32 ............................. GCCGCGTAACATGACCGAAATTCTAGACCCTC 158571 29 100.0 32 ............................. CTGACCGGTCAGGGTTAACGCCCTGGTGCCTG 158632 29 100.0 32 ............................. ACCCAGTATTCCAGGCCTGGCTGGCCGAGCAA 158693 29 100.0 32 ............................. ACCCTGCGCAGCGGTGTCGAGCGCCGCAATAT 158754 29 100.0 32 ............................. TCGCTTTCGGTCATCGCGTCGCACCAGCCAAC 158815 29 100.0 32 ............................. CAGGCGGATTCCAGCTTAGCCCGGAACCGCAA 158876 29 100.0 32 ............................. GAAGCCGTGCAGTTCGGCGAGTCCATCGTGGT 158937 29 100.0 32 ............................. TCCGCCTTGCCGCGCACGAACAGTTCGCCGCG 158998 29 100.0 32 ............................. TCTTCTGGCTCGATGGCTACCCACGACTTGCA 159059 28 96.6 32 ................-............ TTATTGCAGTCCACCAGGGCGAAAATCGGCAT 159119 29 100.0 32 ............................. GTCGTAGGGTTATGCCCCTCGACAGCGGCAAT 159180 28 86.2 0 ...-........T.............GT. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : AGGAAACCATCATGCCGCGCCTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGCTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCCCGTCAGCTCACCGAGAACATGGCCGTGGCACTGCAGGCCAAGCTGTTGCTGGAGGCCGGCAACAGCGTGGTCAGCGACGCCTTTATTGCCAGCCGCCTGGAAGGGTGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCACTGCTGGCGCGCAGCACACCGAATCTGCTTTGATGCAAGGGCGATCTTTAACAAGGCAAAGTTGGTAGATTTTTAGCGCCCGATTTTTCCTTTTAGGAACAATTGGTTACGCTAAGT # Right flank : GCTCTGGATGACGAGTTGGGGGGATGCGCCGGCCATCCAGCCGGCGCCTCAGGGGTCAGTCGTCGCTCTCCAGCACTTCACGGCCGTTGAGCGCCTGGATCGGGCGGGCGTTCTTCGCGTACAGGTGCTGGAACTGCGCCAGTTGTTCGTGGGACAGCTCGACCGGCTGTTTGAGTACGCGCCATTGCACGTTCTCGCTGCACGGCGGGGTGGTCAGTGAGCCGGCGAAGGCGTAGTAACCCTGTTGCTGTGGCAGTACGGTTTGCGGAGCGAAGCTGCCTGTCAGCTCGACTTTGTCGCCCGGCTTGTCCGGCATGGCATTGAACACGGACTCCAGTGCCTGGTTTTTCTCGCCTTCCTTGAACAGCACAGCCACTACCGCCAGACGGCCATCCGTAGTCTGGTGGACGAAGTGAGCCACCATCGGGAAGCCCTTGCCTGCAATGTGCTCTTCGCTGGGTGTATGGAAATGAAATTGCACCAGTCGATAAGGCTTGCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39071-40299 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAE01000002.1 Pseudomonas alcaliphila strain JCM 10630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39071 28 100.0 32 ............................ ACTTGGAGAGCGCCGCGCCGCCGCTTGAGTTC 39131 28 100.0 32 ............................ ATCCCGCGCGGGCACTCGCTTTTGATGTAGCT 39191 28 100.0 32 ............................ AACAAAAGCATTGATGTTAGCCGCGACCTCAA 39251 28 100.0 32 ............................ ACTGGAAAAGGTCTAGGGCTGCGCTCATGAGG 39311 28 100.0 32 ............................ GCCATCGCCGCCTGCCGAGCGCTGGGCATCGA 39371 28 100.0 32 ............................ TGATAGCTGACCCACCCACCGTCGCTGTTGCG 39431 28 100.0 32 ............................ TCAACTGGAGAAAGACACCTGGCCGACGCAGG 39491 28 100.0 32 ............................ AGCGCCCTGGAGGGCGAAGCTATGTCCACGGA 39551 28 100.0 32 ............................ GAACTGGACCGATGCGCCTATCGGCAACACCA 39611 28 100.0 32 ............................ GGCACGGTTGCGCGCCTTCTGATGCTCGTTCC 39671 28 100.0 32 ............................ TCGATCTCGGCCTGCTGCGCGCGGTCGAGCTG 39731 28 100.0 32 ............................ TACCCATCGCCCATCAGACGACGCAGGCGCTC 39791 28 100.0 32 ............................ TCGATATGCTCGCCTGGTCAGAGTTGGGCGAG 39851 28 100.0 32 ............................ ACTCCCATCGCTCGACTGGCAGGCGCCGCCTG 39911 28 100.0 32 ............................ ACGCACACATAGCGAGGATTGATCATGTCCGA 39971 28 100.0 32 ............................ TTCTCCAGTGGCGCCACGATATGGCCGAGCCG 40031 28 100.0 32 ............................ TCGGTGCACATGGTCATGTGCTCTACGCGGTC 40091 28 100.0 33 ............................ GAACAGCTCGTCGAGAGAGATGCGCTGCTCGAT 40152 28 100.0 32 ............................ ACTCGAAGAAGGTGACGCCACCCTAATACGCC 40212 28 100.0 32 ............................ CCTTTGCCGGCGTCAGCCAGCAGACGTGGCAG 40272 28 78.6 0 ...........C.........C..TGGC | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.0 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AGGCGCTGGATCGGCTGATGGCCCTGAACTGGCTCACTGGAATGCGCGACCACCTGACCCTGGGTGAACTGGCGCCGATCCCCGCGCAGGTGCGCTGGCGTTGTGTCAGCCGCGTGCAGGTGGACAGCAACCCGGAACGCGCCCGCCGCCGCCTGATCAAGCGTCACGGCATCAACGAGGCGGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCCTACGTCACCTTGCGCAGTAAAGGCAGCGGCCACAGCTTCCGCCTGTTTATCCGCCACGGCCCGCTACTCGACGCCCCAACCCCCGGTACCTTCGGCGCCTACGGCCTCAGCGCCAAGGCCAGCGTCCCCTGGTTCTGACCCTTTTTTCGGGATAAAGAAAGACTCTTTAAAAATCAATAGCTTAAAAAATTGCTCAAAAAGAGGGTCAATCGCAGTAAAAAGCCAAACCCGCTTTGCCGAGCAAGGTGTTACGGCTTTATGGTTCTA # Right flank : CCGCCCCAACCGTTCGTGAACGGGTCGTGAAACCACGAAGAAATTCGCTCCTACAGCAACCACAGGCTCAGGCCAGGCTACGAAACATCACATGGCAATCGACCAGCCCATGGCGGGCATGGCGGTAGGCCTTGGGAAGGGTACCGACGATGGCGAAGCCGTGCTTCTGCCACAGCGCCACGGCAATGCCGTTGGTGGCCACCACGCGGTTGAACTGCATGGCGCTGAAACCCATCTCGCGCGCTACCTCCAGCGAATGGAGGCAGAGCCGGCTGGCGATGCCACGCCCGCGTGCGGCCGGCGCGGTCATGTAGCCGCAGTTGCATACATGATCGCCCGGCCCGGCCGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGCCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGCTCCACCCAGGTTTTCCAGGCCGTTTCACGATCCATGTTTGGGTCGAAGGCGTAGGTTTCCTGCGCCTGCACCACGTCACGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //