Array 1 5690-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOB02000012.1 Lacticaseibacillus paracasei subsp. paracasei strain NTU 101 contig00092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5689 28 100.0 33 ............................ TTAGTGTCCCTTCGGTGAATGGCGTTGGTGGGG 5628 28 100.0 33 ............................ CTGCACCGCACCACTGGACTTTTGGTGTCTTTG 5567 28 100.0 33 ............................ CAAGCATGATGAGGCTATGGATTTGCTGGACAG 5506 28 100.0 33 ............................ CAACGTACCCGTTTGAACGTGAGAATTATACTA 5445 28 100.0 33 ............................ TACCAGTGGGAACCCGATTGCCCGCAACTACGA 5384 28 100.0 33 ............................ TACAAGGGGTGTATCTCTAGGTGCGCTTGTTGA 5323 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 5262 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 5201 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 5140 28 96.4 33 ......................C..... CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 5079 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 5018 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 4957 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 4896 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 4835 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 4774 28 100.0 33 ............................ CAAGCCATGAAAAAAGCCGCTGGCCCGCATGCC 4713 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 4652 28 100.0 34 ............................ CCTCTGCCCAGTCACCAATCGTGTATCCAAAAAA 4590 28 100.0 33 ............................ TGATCTTCGCAACCGTGAAGGGATTTCAATCAG 4529 28 100.0 33 ............................ CATTAGACGCCGGAACAGGCTGTGAATTTGTTG 4468 28 100.0 33 ............................ CAAACAAGCGGTGACAACTAGCTTGCGTGTGGC 4407 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 4346 28 100.0 33 ............................ CGGTCCAAGTAGTGCCATCAATGCCGGTCCGTG 4285 28 100.0 33 ............................ CAAGGCGGCCAACTCCTTTTACGCCTACTGATG 4224 28 100.0 33 ............................ CAACTGTGCCCTCAACAGAGAACTCAACGTTTG 4163 28 100.0 33 ............................ CAAGAAGATTACCGGTAATGACTACGTCGCCAG 4102 28 100.0 33 ............................ CTAAATCCATTCAGCAAAAACACGTCACCAGCG 4041 28 100.0 33 ............................ TGATCACCCCAGATCAATACAAGCAAATTACAG 3980 28 100.0 33 ............................ TACGCTTGCTGGTATGGCTCACCAGCAGGAGTA 3919 28 100.0 33 ............................ TAATGCTAGTGTGGTTCTCGTAAAGACCATCTG 3858 28 100.0 33 ............................ CAAGATAACGTTAATCGACTACTGGGACAAATG 3797 28 100.0 33 ............................ TGCCGATTTGCAAACGATCGAGCGGTTCTCCAA 3736 28 100.0 33 ............................ CCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTT 3675 28 100.0 33 ............................ TCAAAGCCCACATTAACAAGGTTGCCATGACGA 3614 28 100.0 33 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGG 3553 28 100.0 33 ............................ TAAGATTGTGACGTCCGGCAGTATTTATGATCT 3492 28 100.0 33 ............................ TGACAACAGTCAGGTGACGCATACCGAACTCAG 3431 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 3370 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 3309 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 3248 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 3187 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 3126 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 3065 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 3004 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 2943 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 2882 28 100.0 33 ............................ TTTATTAGAACTAGCTGAAGATGGAACAAATGA 2821 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 2760 28 100.0 33 ............................ CAATCAATTCGCCAACCGTTAATTCGCCATTCA 2699 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 2638 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 2577 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 2516 28 100.0 33 ............................ CAGTTCCTACCTGACTGTCCCACCAAGGTGCCG 2455 28 100.0 33 ............................ CCATGCACGGGCAACGGCTACTTGGTTGTCAGC 2394 28 100.0 33 ............................ CGAACGTAACAACGTGGCCACCATGTTTTCGCG 2333 28 100.0 33 ............................ TCGAAAGAGGTAGAAAACATGAAAACAGCAAGC 2272 28 100.0 33 ............................ TCCTAAGCTGGCTTTGTTGTTAGGCATTAAAAA 2211 28 100.0 33 ............................ CAGGAGGAACCATCATGGCAGAAGAAACACAAA 2150 28 100.0 33 ............................ TACATCAACAAAGAGTATGACGTCAGCGGCACC 2089 28 100.0 33 ............................ TGACATCATCACACACAAGGAGCCATACCAAGC 2028 28 100.0 33 ............................ CAGATAACGTTACATATCACTGGAATAACACAA 1967 28 100.0 33 ............................ TTATTGTCAAAACCACCGTAGTTTTGGCCTGTT 1906 28 100.0 33 ............................ ATCCTTACCTTTAGCAATGCTAATCAGCATAAG 1845 28 100.0 33 ............................ CAACTGGCGTGCTCGCTCGTGCATGGTGGGAAG 1784 28 100.0 33 ............................ CGTGCGGGTCTCAGGTAGATGTCGAATCAATCA 1723 28 100.0 33 ............................ CCTTATCGCAAGTAATAGGTACCATATTAAGTT 1662 28 100.0 33 ............................ CAGCTTGCGCACACAAATGACAAATGCCGAAGC 1601 28 100.0 33 ............................ CAACTCGCCTATATTCTTCTACTATGGCGAAGA 1540 28 100.0 33 ............................ CAGTGCGGCGAATAATAATACCAGTCCGGCAAG 1479 28 100.0 33 ............................ CACCGTTTTTGCAAATGGTCAATGACGGTTTCA 1418 28 100.0 33 ............................ CAACGTTTCGCGTAATCTTAGCAAACACTAGAT 1357 28 100.0 33 ............................ CTTATTATATTTTGGAATGGCGTGCCGAGGTTT 1296 28 100.0 33 ............................ TACATATGCAATTTTTCCACTAGTAATAGAAAC 1235 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 1174 28 100.0 33 ............................ TAACTTTCGTCCTATTTCTGTTCCTTCAGTCAA 1113 28 100.0 34 ............................ CGAAACTGGTTGGTTGACGTTCTCCTGGTTTCCA 1051 28 100.0 33 ............................ TGAGCTTGTTAAGGACGACCCAGTTACCATCAA 990 28 100.0 33 ............................ CAATCTGGTTAACTACACCATCTTGATTGATAT 929 28 100.0 33 ............................ CTCAGGCAAGTTATCTGGCAAAAATCCAGATCG 868 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 807 28 100.0 33 ............................ CAAGGCCGCTTCGCATTCCTTGACTTATGCACT 746 28 100.0 33 ............................ CTGCTATCCGATCGTGGTCGACCCACGTACAAA 685 28 100.0 33 ............................ CAACAACCGAATGGAAACCCTGAACAACAACCG 624 28 100.0 33 ............................ TGAAATTTCAACGCTGTCCAGAACTTTGTCATT 563 28 100.0 33 ............................ CTCGCAAGCGACAACCGGCAAGAATCTTACATC 502 28 100.0 33 ............................ CGCAAAATAGGCCGCAAATATTTAGAATAAAGG 441 28 100.0 33 ............................ TTGTCGCCATTCTTTGACGGAGTTTGACCCCGA 380 28 96.4 33 .......G.................... TGTTACGTTCGATCCTGATGGTAACGTTGGTGA 319 28 100.0 33 ............................ TGCGAAAGCCAAAGCGAACAACCGCAAAAAAGG 258 28 100.0 33 ............................ CATGGCTAGCGATGGTATTATTTCTGGGGCTGA 197 28 100.0 33 ............................ TAAAGAATAAAGGAAAAAATATTTTGTGTTCTA 136 28 100.0 33 ............................ TTGCAAGTGAAACATAATACTGACAGCATAGGA 75 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 93 28 99.9 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCAGTAGCCTCTTGGCTAAAATAGGCTTTTATTTGTTTTCCCGGTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //