Array 1 962504-964607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040701.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 3 isolate CFSAN047349 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 962504 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 962565 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 962626 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 962687 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 962748 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 962809 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 962870 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 962931 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 962992 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 963053 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 963114 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 963175 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 963236 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 963297 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 963358 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 963419 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 963480 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 963541 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 963602 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 963663 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 963724 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 963785 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 963847 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 963908 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 963969 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 964030 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 964091 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 964153 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 964214 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 964275 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 964336 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 964397 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 964458 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 964519 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 964580 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 981115-983828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040701.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 3 isolate CFSAN047349 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 981115 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 981176 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 981237 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 981298 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 981359 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 981420 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 981481 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 981542 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 981603 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 981664 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 981725 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 981786 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 981847 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 981908 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 981969 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 982030 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 982091 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 982152 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 982213 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 982274 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 982335 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 982396 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 982457 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 982518 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 982579 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 982640 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 982701 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 982762 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 982823 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 982884 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 982945 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 983006 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 983067 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 983128 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 983189 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 983250 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 983311 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 983372 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 983433 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 983494 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 983555 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 983616 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 983677 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 983738 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 983799 29 93.1 0 A...........T................ | A [983825] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //