Array 1 54437-52145 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGU01000002.1 Moraxella catarrhalis strain COPD_M100 NODE_2_length_348036_cov_43.6554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 54436 28 100.0 32 ............................ AACAGCATACCTTCACTGGCTTGGCTAAGTTT 54376 28 100.0 32 ............................ GCCACGAACTTTCGGGCAGATTCATGATTTTT 54316 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 54256 28 100.0 31 ............................ ATATCGCTAAAACTGTGCCAAGCGTATCATA 54197 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 54137 28 100.0 34 ............................ CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC 54075 28 100.0 32 ............................ ACTGTCAATATAAGCCTGCGGAAATTCATAAA 54015 28 96.4 32 ....G....................... GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 53955 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 53895 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 53835 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 53775 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 53715 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 53655 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 53595 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 53535 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 53475 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 53415 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 53355 28 100.0 32 ............................ ATTTAAGAAAAACTAAACCAAAGTACCAAGAT 53295 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 53235 28 100.0 32 ............................ TCACACAAGTTTTTGCCAAAACAGTATGACCA 53175 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 53115 28 100.0 32 ............................ AAAGCTTGTCTGAGCGGATTAATACCGTGCAA 53055 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 52995 28 100.0 32 ............................ TATTCTCTGGTGATTTGATTGTAGCAACAGTG 52935 28 100.0 32 ............................ ACGCTATTAAGCAAAATAACATCAGCAGACGC 52875 28 100.0 32 ............................ TCGTAAAAATCGCAAAGTCAACAAAATCAAAA 52815 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 52755 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [52713] 52712 28 100.0 32 ............................ GAAAGTTATCAAAACGGTTTTGGCAGTACTTA 52652 28 100.0 32 ............................ ATGGATTTACAGAAACTAGAAAAAGAATTGAG 52592 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 52532 28 100.0 32 ............................ CATTAAGAGCTTCAAAAATCGGATTAAAAGCT 52472 28 100.0 32 ............................ ATACGCTCAAACCGACCGATTTGAAAGCAATT 52412 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 52352 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 52292 28 100.0 32 ............................ ACTATGTCAGTCAATCTCATTGGTGCGTCAGC 52232 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 52172 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 39 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //