Array 1 1669043-1679769 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019791.1 Rubrobacter xylanophilus strain AA3-22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================= ================== 1669043 37 100.0 38 ..................................... CGCGACACCGGGAACCTTGCCGCCTCGTTCCGCATTCG 1669118 37 100.0 37 ..................................... CTCCGCAAGCTCCTCCGCGTTCTTCTTCTCCCTAAAC 1669192 37 100.0 38 ..................................... CTCCCTGGCCTTCCGGTAGAACTCGTCCCGCTCCTCGC 1669267 37 100.0 36 ..................................... ACGCCTGGTCGCCACCGCTCCTCCCGGAGGCCCGCC 1669340 37 100.0 36 ..................................... CTCGACCTTGGTCAGACCCTTGCGTCCGGTGTCGCC 1669413 37 100.0 37 ..................................... ACCGCTAAAGCGTGTGGGCTTCCGCGCCGTCAAATTC 1669487 37 100.0 35 ..................................... CCTTCGCGATCTGGTAGAGCCGCGCCGCAGCGAGG 1669559 37 100.0 39 ..................................... GAAACGGGCGGAGCGGGACTGCCTCTCCGTCCGGCAGGT 1669635 37 100.0 36 ..................................... TGGATAGCCTCGACAGGGTGGCTGACGCGCTCTACC 1669708 37 100.0 36 ..................................... CGCCCTGGCTGGTCGAGGCCATGCTCGACCTCGTCA 1669781 37 100.0 37 ..................................... GGAGTTGAGCATAGGCCCATTTCGAGTGCCTGGAGCG 1669855 37 100.0 36 ..................................... GCACGAACTCGAACGGGTAGCGGGGCTGCGGCGCGA 1669928 37 100.0 38 ..................................... CCTCCCAGGGGCTCGCCCGGACTCCGTACGAGTCGCTG 1670003 37 100.0 34 ..................................... CTTCCTCTCGAGGCCCGGTAGACGAGCCCGGCGG 1670074 37 100.0 36 ..................................... CGAAAAAAGTCCCGGCGCTGGCGAAAACGCCGTAGC 1670147 37 100.0 37 ..................................... CGCCGCGCGTCGAGTGCAGGTCGCAAGAAGAGATCCT 1670221 37 100.0 35 ..................................... CCTTCCGTTTTTACAGAGTGTAGCCGATCTGAAGC 1670293 37 100.0 35 ..................................... CGGCGAGCGTACGTGGACTCGTTGTGCCCGCACCT 1670365 37 100.0 36 ..................................... CCCGCGATTCCTACCCGAACGCCGAAGCTCCATATA 1670438 37 100.0 38 ..................................... GCCGTTTGCGCGGGTGATGTTGTAGTGATGCCGGACGT 1670513 37 100.0 37 ..................................... GCCGCCCACGTCGTCCGTGGCGTGGACGAGCAGGCGC 1670587 37 100.0 36 ..................................... TCTGTATGGCTTCGTCGCTGTAATCGGCCAATCCGT 1670660 37 100.0 37 ..................................... CTGCACGGGAGGCAGGTAGATGACATTCATAAACCGG 1670734 37 100.0 39 ..................................... CTACGCGGCCCCGACGCAGGAGCAGGTGGATGCCTTCTG 1670810 37 100.0 36 ..................................... CGGGTCTGCACGAGCTGATCGGGCTTTTCAAGGAGG 1670883 37 100.0 36 ..................................... TGCACGACTGGATGCTGCCCCCCAAGATAGTCCAGG 1670956 37 100.0 37 ..................................... CCAAGTACGCTGCGATGTCGCTTAAGAGCGTCAACTC 1671030 37 100.0 37 ..................................... TCGGCGCCACGTTGAACCGGCCGATCTTGGTGTGGTT 1671104 37 100.0 37 ..................................... CTCCGGCTCGTGGGCGGACTACGACGGGGCGCCGGTG 1671178 37 100.0 36 ..................................... TTCTGTCCTTCCCTCTGTCCTTCCTTGTCATCACTC 1671251 37 100.0 37 ..................................... CCTACCCCGAGCTCGCAGAGGCCCAGAGGTTCGTCAA 1671325 37 100.0 36 ..................................... CGTTCTCGATACGCTTTATGGCGTGCCGGTTTAGGA 1671398 37 100.0 38 ..................................... CGGTCCCAACGAACGAGTCCCGCCCGGTGTTCGGGCGG 1671473 37 100.0 37 ..................................... GCCCCTACCGGCGCCCCGACTACCTCACCGACCCCGT 1671547 37 100.0 37 ..................................... GGTCGGCGAAGATGTGCGCGGCGAGGTAGGCCCTCTC 1671621 37 100.0 37 ..................................... CGAGGCGAAAGAGAAGCTCGAGGAAGTCACCGGGAGC 1671695 37 100.0 38 ..................................... CGGGCGCCATGCAGAGCGCGCCGATCTCCGAGGCGATG 1671770 37 100.0 39 ..................................... TCCGGAACAGCTTCGCCGCGTGGCGCGGGTCGCGAGCTT 1671846 37 100.0 37 ..................................... GCCCCGAGAACGACGCGATCCGGACCGTCTCCTCCAG 1671920 37 100.0 36 ..................................... CTGGCCGGGCAAGCGAGCCAAGTATCAGATGTTGGC 1671993 37 100.0 36 ..................................... GCTATATCCGCCACGGACGCAAGAATCCATGGAAAA 1672066 37 100.0 36 ..................................... CCACAAGCTCTGCTACTACGAGCTTCGCGAGCGATT 1672139 37 100.0 36 ..................................... ATTCCTTGCGCTCAATCCCCTGCATCTCCCGCAACT 1672212 37 100.0 38 ..................................... CGCTCGTCCTCGCCGCGGACAACGATGCATACGAGCGC 1672287 37 100.0 34 ..................................... CTCCCTCCGGGTTCGGAACGACGGCGAGGCTCTC 1672358 37 100.0 38 ..................................... CTGCCCCCACGGACACGACGCTCGGGCAGGTCCGGGCC 1672433 37 100.0 36 ..................................... ACCGTCAGGTTCCCGTACAGCCGGGCCGCTTCCCAG 1672506 37 100.0 37 ..................................... GAGGAAGCTCAGGTCGGAGGCGCGGAAGGCCGCCGAG 1672580 37 100.0 35 ..................................... TTCGCTATTTTGCGGGCCATCTCATCGGCGGAGAG 1672652 37 100.0 37 ..................................... GGAAGCCGACGCGCATCTCCCACTGCACGGCGACCTG 1672726 37 100.0 35 ..................................... CCGCGATTGTGACCCCGGCGGGTACGGGTCATAGA 1672798 37 100.0 36 ..................................... TCACCAACGCAAAATTCAAGGTCCACGCTGCCAGCC 1672871 37 100.0 36 ..................................... ACGCCAGCGTGGAGGTGCCGCCGGAGGTTGCGGCGG 1672944 37 100.0 35 ..................................... CCTGATCCTGGACGAGTGGCAGCTCATGGACGAGC 1673016 37 100.0 37 ..................................... CAGCAGCACCGGCCGCGGCCTCGCTATCTCCAGCCCC 1673090 37 100.0 38 ..................................... TGCTCCTCACCTGCTCGCGTATCTGGCGCTCCATGAGC 1673165 37 100.0 37 ..................................... ACGGTGTCGCGGATTCCGCCGTACTTCTCTCTCGCCC 1673239 37 100.0 36 ..................................... CCGCATGGCGAGGACCGCATCCCGCAGACCGATCCG 1673312 37 100.0 35 ..................................... CCTCCTCGACCACCACGAACGTGCCGTCCTCGCCT 1673384 37 100.0 36 ..................................... AGGCGAGAGCTTATCGGCCCGCCGCGGGCCGAGGTC 1673457 37 100.0 36 ..................................... CTCCATAGACGAGATCGCAGAACGCTGGGGTGTAAG 1673530 37 100.0 37 ..................................... TCCCCGAGCCGAGCGTGAGCAGGCGCCGCTCCACCGA 1673604 37 100.0 35 ..................................... CCTCCTCAAAATAGTCCCTTTGTCCCCGCAGCCAG 1673676 37 100.0 36 ..................................... CTCGAGGTCCTCGATGCGTCCGGAGAGCTCCTGCAT 1673749 37 100.0 39 ..................................... CTCTTTCTCCGTCAACCTTTCTCCTCCTTTTTCCTCCGT 1673825 37 100.0 35 ..................................... GCCTCTACCCCTTCATCGACCGGGTGGGTGCTGTG 1673897 37 100.0 36 ..................................... CTTGGGGCCCCGGTAGTAGTGGTGCTTCGGGGGCGG 1673970 37 100.0 37 ..................................... CTTCCATTGCCGGAAACTTCCAGGGTGGGGGAATAGG 1674044 37 100.0 36 ..................................... GTCGCCAGCCTGCCACGCGATATAGCGGTAATAGTC 1674117 37 100.0 37 ..................................... GGCGGGTCAGCTCCGTGTCCCGCCTGCCCTCCGGCAC 1674191 37 100.0 37 ..................................... CCTCCACCTACACCGCCCCGCCCGTAGGGGGGACGCT 1674265 37 100.0 35 ..................................... ACCTCCCGAGATGCGCCCAACCGCCGCGCCTGAAG 1674337 37 100.0 37 ..................................... CTCTGAAGAGCCGCACGGCACGCGCGGCAAGAGACCC 1674411 37 100.0 35 ..................................... GCGACCTGGCCCGCCTCGCTGGTTGACGGGGCGAT 1674483 37 100.0 35 ..................................... CCCTCCTCCTCGCCTCCAAGCCTGAACAGCCCGGC 1674555 37 100.0 61 ..................................... TCTTCTCCCACAGCCGCGTCGCGTCGGTTTCCATCTTCTTGTGGCGCCGGATCTCCGCGCG 1674653 37 100.0 37 ..................................... CTCTACCTCGGACCCGACCAAGTCTCCGGAGGTCCGG 1674727 37 100.0 36 ..................................... CCCGTGGTGGCAAGAGCTCCGGAAACCGGGAGATCA 1674800 37 100.0 38 ..................................... ACTCTCCCACCCGCCCAAAACCAAACCGAAGCCCAAGC 1674875 37 100.0 35 ..................................... CGCGGGTTGCCCCAAGGACGCTAGAGAAGCGGGTG 1674947 37 100.0 35 ..................................... CTTGAAGGGCATGTAGAGGTCGTAGGGCCTCTCGC 1675019 37 100.0 35 ..................................... TTGGTGAGCGTGGTGGAGCCGTGCATCTCCTGCCA 1675091 37 100.0 36 ..................................... CGGTCCTGGAGGAGGCGCTGGCGGGTGAGGCGTTGC 1675164 37 100.0 36 ..................................... TTGTATGCTGGAGAGGGAGTCCCCCACCCAGAAGAC 1675237 37 100.0 36 ..................................... ACCGTCGCGGAAGAGGAGCAGACCATCATGTTCTCC 1675310 37 100.0 36 ..................................... TCCCCTGGAGCCCCGGCAGGGAGGCGGCCTGCTGGG 1675383 37 100.0 37 ..................................... CCGCCTCCGATTCCATCTCCCCGACCTCCGAGGTGAA 1675457 37 100.0 36 ..................................... AACCCGAATGCTGCGCTTGAAGCTCCACGCGGCTTT 1675530 37 100.0 36 ..................................... GCCCACTCCGCGTGCGGACGCGGGCCCACGCCCCGC 1675603 37 100.0 40 ..................................... CTTATTACGCCCTGACCGCCATGAGCGAGCACGCCCTCGC 1675680 37 100.0 37 ..................................... TTGCGCGCGGCGAGCGGAGCAGGGGCGTGCTGATGTT 1675754 37 100.0 36 ..................................... CCCGCTGTGCGGCCGCAAGGCCCCCTCGATGCTCCC 1675827 37 100.0 35 ..................................... CTCCAAATCCGCGATGATCGCATCATACGAAGCGC 1675899 37 100.0 37 ..................................... TCAAATCCGTGGCCGGAGGGTCACGGTCCTCGTCAAG 1675973 37 100.0 35 ..................................... TCTACTCGTACATCGTCGTATCCACAAGCAAGGAC 1676045 37 100.0 36 ..................................... CCGGATCCGTGTGGTCGTTGCCCCACATCTGCGCGT 1676118 37 100.0 34 ..................................... CGACGAAGAGAGAGGAGGGGACGGGAGAGATCCC 1676189 37 100.0 36 ..................................... CCAGACGGACTCGTCGCCTGACCAGCGATCGAGCCG 1676262 37 100.0 36 ..................................... TCGGGCAGCGACGTGATCCGGACTCGCGGAGGACGC 1676335 37 100.0 37 ..................................... TCATCCGAAGCGAGAGCGTCCGTTGGTCGTAAGACAC 1676409 37 100.0 36 ..................................... CCCTCCTCCTCGCCTCCAAGCCTGAACAGCCCGGCC 1676482 37 100.0 36 ..................................... CTAAAGGCGCATTCTTCCCCAGAGAATGATGCAGCC 1676555 37 100.0 37 ..................................... GCTGAAGCGGCGAGTTGGGGTTGGCGGGCTTTACCCG 1676629 37 100.0 36 ..................................... ATAGACTTCGGGCTCCGGAACGACCGCGACGAGCCG 1676702 37 100.0 36 ..................................... CCAACAACGCGGATGCCGGGCGGAGGAACGGCGAGG 1676775 37 100.0 35 ..................................... CCCGTAGCGATCGCGCCCCCGGTAGCGGGCGACGA 1676847 37 100.0 38 ..................................... GGTCTCGAGAAAAGAGACCTGCCGCACGTCCATCCCCG 1676922 37 100.0 36 ..................................... TCCGGGCGGGCCACCAGGTTAGGTGGGTCCGGTAGG 1676995 37 100.0 36 ..................................... CCTCGCGCCGGATCGCCCGGACGATAGCGGCCGCCT 1677068 37 100.0 36 ..................................... CTGGTCAGGTAACGGGTAACGGCGCAGACCAGACGG 1677141 37 100.0 36 ..................................... CCCTGCGCCGTCTGAGAGGACGATACGGATCTTCTG 1677214 37 100.0 35 ..................................... GCGCTATGAGCTCGTCGTCCAGCGCGGTGTGGTAT 1677286 37 100.0 38 ..................................... GACATCGAGCAGGTGATGGAGCGAAAGAAGCTCGGCGG 1677361 37 100.0 37 ..................................... CGGCGCTCAAGGGGCTCCGGGCGGAGACGGGGAGCCC 1677435 37 100.0 36 ..................................... CCAGCACCCCGAGAAGGGCTACCACCAGCCGCTCGA 1677508 37 100.0 37 ..................................... TCGGGGAGATGGAGGTCTACGAGAACTGCTTCAGGGC 1677582 37 100.0 35 ..................................... CCTTTGGCCGCCGTGCCCACCGGTCAGGCGGTGGG 1677654 37 100.0 35 ..................................... TCACCTGCGCCCTTCCCTCCTGCGCTATACTTTTT 1677726 37 100.0 43 ..................................... ATCAGAAGAGCCTCCCGTCGAGCGCTTCCGCCGCGGGCGGGTT 1677806 37 100.0 37 ..................................... TGAAGAAGAGCTCAGGCTACCGGAAGAAATTTCCGGT 1677880 37 100.0 37 ..................................... CTCGCCGTCTCCGCGAGAGAGGCGGAGAGGCTTTGGA 1677954 37 100.0 35 ..................................... TCCGCCTGAGCTCTTCCTCCAGCTCGTCCGGGTCT 1678026 37 100.0 37 ..................................... TCGAGATCCGTGAAGATCTGGGCGAGTCCTCCCCAGA 1678100 37 100.0 38 ..................................... CACCTACAACGCCGGGGCTTTGGGCATCCACATACCCG 1678175 37 100.0 36 ..................................... CTTCCCCAGCAGATAGTCGTAGGAGAGCGTGGAGGG 1678248 37 100.0 38 ..................................... CGAAAAAAGTCCCGGCGCTGGCGAGGGCGGGTTAAGAC 1678323 37 100.0 37 ..................................... ACGCGCAGGGCGTGGAGGAGGGCGAGGCGGCCGTCTG 1678397 37 100.0 37 ..................................... GTTCCAGCGGTCCCTGGAGGCGGCTCGCGCGGAGGCG 1678471 37 100.0 38 ..................................... CGGTTCCCCGGTTGATGTACAGGGTTACGTCGTTGCCC 1678546 37 100.0 39 ..................................... TCCACCGGGAGAGCCACCGGGGGCTCCGCCGGGGCCACC 1678622 37 100.0 37 ..................................... TATCCAGCCCAACGAGGTTGAGGTTATAGCCAATTTG 1678696 37 100.0 36 ..................................... GGGAGGCACGAAGGAGGCCCGGAGGGACCCGGAAAA 1678769 37 100.0 35 ..................................... AAAGACAAAAACCCCGAGGGGAGGATGCGGGTGGC 1678841 37 100.0 35 ..................................... CTCCAGCACAAAGGCGCTCATCCCATCCTCCCCAC 1678913 37 100.0 37 ..................................... CCAGGGACATCCCGTGGTCTTCGTCGGTACAGAGAAA 1678987 37 100.0 36 ..................................... TGGAGTACGAGAGGCTTATAAAGGACTTCCCTTCGA 1679060 37 100.0 38 ..................................... CCTCCCTGCGGGGTCTGGGGTACGGGGAGGTACGGGGC 1679135 37 100.0 36 ..................................... CCTCCTGCTCTCGGTGCTCCGCGCGCACGGCCAGCG 1679208 37 100.0 40 ..................................... GGCCGAGCTGCCGATCGCCGACTACTACGACGTGCGGGTG 1679285 37 100.0 35 ..................................... GCCAGGGCGGAGATCACGCGCCAGACCCCGCCCAG 1679357 37 97.3 38 ...T................................. GTCTCCGGTGGTGTACCACGCGCCGTCGGTCTCGGAAT 1679432 37 97.3 46 ...T................................. ATGGGGACGGCGCATCTTACGTCGGGCGCGGCGGCCGCGTCCTCAG 1679515 37 97.3 35 ...T................................. ATACCGTCGGCGAGGGCAACCAGGCCAACGTGCGC 1679587 37 97.3 35 ...T................................. CCCGGATCACCGAGGCGAGCTCGCTCTCACGTGAA 1679659 37 97.3 37 ...T................................. AACGGATCGTCAGGCGGCTGCTGGACGGGGTCGGGAG 1679733 37 97.3 0 ...T................................. | ========== ====== ====== ====== ===================================== ============================================================= ================== 146 37 99.9 37 GTTGCAGAAGCCACTCCGCAACATAGGAGACTGAAAG # Left flank : GGCGGAAAGAGCCTCATGTCCGCTAAGAGGCAACCTCAGGGGAGCCTCGGTCAGCACATACCGGTCCTTCTGAAGCTCGATCCCGAACCCCGCTTCGCGCAGCGCACTGATATAGCGGCGTATGGTACGCGAGCTCCTGCCGAACCCCTCCTCCATCAAAAGCTCAGCGAGGTGATCGGCGCTCATGGGCCTCTCGGAAAGCCCCTTCAGTATCTTCAGCGTATTGGCAACGGCATCCATGTGTCCTAACGCTACCCTTTCGCAAACTGCCGCGACTATCTGTTACAAGCCGCCAGGGGGATCTTTGTCTTTTCACTATAGTAGCTGCAAACACGCAAGAAAGTAAGTTCGCAAGCCTCCCGGTCAGGTTCGCAGAAATCTCGTTTGCGATCCGCGACCTTGCAAAAGCATTCCCCCAAACGGACAATGTTGGTGCATGATCCTTGAAAACCCAATACCCGAGCGGAGAAAAGTGGCGATTACAAGTAGTTACAGGGTCG # Right flank : GGTCACGGGCCCATCTTCCTCAAACCCCTATAATGTCTCCGTAAGGGAACCGGGACGGCGAGGAGCAACACCAAAATGGCTTTGAAAGGCGAGGTCCTGGAGAAGGTGCTGACACGGGTGCGTGAGCGCATCCCGCAAGGGGAAGCGCCGCGGGTGAAGCGCTTCGTCCGACGGTACTACGAGTGGGTTCCGGAGGAGGACGTCTCCGGCCGGTCGGTCGTGGACCTTTACGGGGCGGCGGTCTCCCACTGGCAGCTGGGCGGCCGCCGGAGGCGGGGGGAGGTCAAAATCCGGGTGTACAACCCCCAGCACGAGGAGCATGGCTGGCAGTCCACGCACACCGTGATCGAGATCGTCAACGACGACATGCCGTTCCTGGTGGACTCGGTGACGATGGAGCTGAACCGTCTCGGCCACGGAATACACCTGCTGGTCCATCCTATCGTGAGGGTGCGGCGCGACGGAGAGGGGCAGCTTCTGGACGTGCTCCCTGCGGGAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAAGCCACTCCGCAACATAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 2589313-2585719 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019791.1 Rubrobacter xylanophilus strain AA3-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 2589312 30 100.0 38 .............................. AGCACCGCCTTGGCGTTGGGGGAGAGCTTCCGCTTCGC 2589244 30 100.0 38 .............................. GGAGGATAGCATATTGGCAACCAAGTTGCTACGAACCC 2589176 30 100.0 35 .............................. AGCAGCCGCGCATGCCGCCTCTGCTCCTCCTTCAC 2589111 30 100.0 36 .............................. GGGCCAAGATGACCGCTGACGGTATAGAGCTCACGA 2589045 30 100.0 37 .............................. CCGATGCGGCCATAACAAACGCGAAGATAGCGAACCT 2588978 30 100.0 38 .............................. GTAAACGGTCCGCTAGTCGTCCAGGGTGCGCTCAAAGG 2588910 30 100.0 37 .............................. TTTTCTGCAACGATGAGCCGGGTCTCTCGATGCGCAT 2588843 30 100.0 36 .............................. AGCTGGGCGACCTCCCACGTCTCGCGCTCGCTCCGC 2588777 30 100.0 38 .............................. TCGCCCAGGATCAAACCCTTCGCCCATCCCCGGAACCA 2588709 30 100.0 37 .............................. GATCTCCGCGCGCAGGGCGTGGCGGAAGGTGGAGCGC 2588642 30 100.0 38 .............................. CCGCGGCTGCTCAAGACCTTCGACTCCAACGGCTACGG 2588574 30 100.0 37 .............................. CCCGCTCTTCTGCTACTGCTGCGGGGGGAGGCTGCGG 2588507 30 100.0 38 .............................. CCTTCCCCCGATGACCCGCCGTCTTAAATCCAAGACGA 2588439 30 100.0 36 .............................. TGAGGTGCCGGGCTTCCTCGCCGGCCTCTTCGACGC 2588373 30 100.0 37 .............................. TCCAGCGTCCGTCGAATGTCCTCCTCGGTCGCGTCGC 2588306 30 100.0 37 .............................. AGGATGGACGCATCTGTCGAACGGGCGGTGCGGGTTT 2588239 30 100.0 37 .............................. ATTGAGTCAGGGAAGGAGAAACATGCCGTCTAACGAA 2588172 30 100.0 38 .............................. CTACTACTACGCGAAGAAAGGCGAGACGCACAGGCGCG 2588104 30 100.0 38 .............................. GCGCGCGAGGGGCTGAGGGAGACGCCAGCGCGGGTTGC 2588036 30 100.0 38 .............................. GCACGCCGGAGACTGGCCGTATAACGAGCGGTCAATCG 2587968 30 100.0 38 .............................. TTCCTACGAAGAGGAAGAGGCCCTCGAGATCGAAGCTC 2587900 30 100.0 38 .............................. ATACTTTGCCGGTTTCGGCTGCGGGGCCGGGGAGGGAC 2587832 30 100.0 35 .............................. GACGATAACTCCCGGAAGCCGCTGCGACCCCGACG 2587767 30 100.0 39 .............................. GCCGCGGGCACGCGGATCCCCTCGCCCTCGGGAGAGACG 2587698 30 100.0 39 .............................. GTGCGACCGCACGTACGGAATCGGCACGAATCCGAGCGG 2587629 30 100.0 37 .............................. TGCAGGTAGAGGTCGATGGTCTCTCCCTCGTCGGGGA 2587562 30 100.0 37 .............................. TGGTGACGGCGCTTATAGCGCTCGTCTATCCTCCGGA 2587495 30 100.0 36 .............................. AAGAATTTCCTGGATTTTTCTAATTCTATCTTGACA 2587429 30 100.0 37 .............................. TGCGGTGCATTACACTACCAGCATGATAAAGAGCTTC 2587362 30 100.0 36 .............................. CCTTCCAGACGGGTACGTCTTCGTCCCTGACCCCGA 2587296 30 100.0 36 .............................. TTCTCGCGTTCATGTCGTTTCCCTCCTTCTCGCGGT 2587230 30 100.0 38 .............................. TCCATGAGGATGACCTTCTCGCCGCTCTTTGGCGGGCG 2587162 30 100.0 47 .............................. GGAGAGAAGCTCTCCCCGTCTTTCGCGGCGAGAGCTGGGAAGAGCAA 2587085 30 100.0 36 .............................. TCCTCCGGCGTGATCACCACGTCGAGCGCCCGCGCG 2587019 30 100.0 37 .............................. ATGGGCCTCTAGTCGTGCGCATCCACCTCGCCGACGC 2586952 30 100.0 38 .............................. GAAGTACGCCGGGTATGGTCTGTTGCCACGCTATCCGG 2586884 30 100.0 39 .............................. TGAGCAACGAAGCCGTGGCACGAGCGCTCATAGCAGGGC 2586815 30 100.0 36 .............................. TTTTAATGAGGGTTGCCATGCTATCGCCGATCACAT 2586749 30 100.0 36 .............................. AACTCCAGCGCCCACTCCCCGTACTCCTCCACCCGC 2586683 30 100.0 38 .............................. GTCCCGTCGTGCAGGGCGAAGGAGCGCTCGCCGGCGCG 2586615 30 100.0 35 .............................. ACGTCCGGCGGCACCTCCACGCCGGCGAAGCGCAC 2586550 30 100.0 36 .............................. GGCGCCGACGATATTCCCCTCATCGTCGCGGACAAA 2586484 30 100.0 36 .............................. GTACGCCTTCTGCACCCTGCGGTGGTCGAACGCCCG 2586418 30 100.0 36 .............................. CCAGGAGTGGAGATCCTGCCCCCACATCCCGTGCAT 2586352 30 100.0 36 .............................. TCGTCTCCATCCTCTCTCCTTTCTGCTCTCTCTTTA 2586286 30 100.0 37 .............................. GAGTTGTAGGCGTGGATCTGGACAGAGGAGTTGCGGC 2586219 30 100.0 36 .............................. CTCGACCCAATCGTGTTTAGTGCTCCAACGGTATAT 2586153 30 100.0 40 .............................. GGTGGAGCGGCGGGGGGATACCCTCGTCCTGCTCTACCGC 2586083 30 100.0 36 .............................. TTGCGAGCCATCCTCTTGTATGTCTTCCGGAATTAC 2586017 30 100.0 36 .............................. CGGTCCTCCATCGTGGTGTCGAGCCTGTAGCGCATC 2585951 30 100.0 37 .............................. CCCACAGCGATCTCCGGAGGGTTCGCGGCAGCGACGA 2585884 30 100.0 38 .............................. AGTGTGTCGCCACAGCCCACGAGGCCGCACGGGCACGA 2585816 30 100.0 38 .............................. CGGGATGAACCATCAGTAAAGATGGGTTTTGGCAATGA 2585748 30 73.3 0 .A.....A..CGTTC....A.......... | ========== ====== ====== ====== ============================== =============================================== ================== 54 30 99.5 37 GTTTTGAGCCTACCTATGAGGGATTGAAAC # Left flank : TCTACAAACTCGAGAAACACCTGATGGGTGACGAGCCTTACGAGCCGTTCGTAAGCCGGTGGTAGGAGCGCGTGTACGTGATCATGGTATACGACGTCAACGTAAAGCGCGTGGTCAAAGTGCTCAAGATAGGCCGCAAGTACCTCGAGCACGTCCAGAACTCCGTCCTCGAAGGTGAACTCAGCCCCGCACAGTACAAGAAGCTCAAGCACGAGGTGAGCAAGGCCATAGACCCCGAGGAAGACGCCGTGCGCTTCTACCTGCTCCGCAGCACGAGATACCTCTCCACCGAAGAGCTCGGACTCCCCTCCCGCCCAGAGCAGGAGACCAGCTTCCTGTAGTCGCGTCGACCTCCGATAGCGCATCACACTCCGGAGATCGACGCACGAAGATCTGGCTTACCCAAGCGCTTTGCTCTATAATCAAGTTTAAGAGCAAGAAAGTCACGGGAGAAAGGAGGAATCAGCAAAATAGCTGCAAAACCGGCATTTGGGCGTGGG # Right flank : ACATCCATGCGCCGGACCTCTCAGGGGTTGGGAAGTCCGGCCGCCCTTCGCAGCCGGACTACGCCGCCTACCGCGACGCGATCGCCGGCCGGCCGCTGCCGCTCGCGCTGCTCGACCGCGACGCGTTGGACGCCAACATCGCCGAGGTGCGCCGCCGCGCCGGGATGCTGCCGGTGCGGGTGGCGTCCAAGTCGGTGCGCAGTGTCCCGGTGCTGCGCCGCATCCTGTCCACCAACGGCTTCCGGGGGCTGATGTGCATGACGGTCGCTGAGGCCGTCTACCTGGCCAGCCAGGGTTTCGAGGATCTCCTGGTGGCGTACCCTACCGTGGACCCCGCGGCGCTCCGGCTGGCGGCCCGGGCGTCGCAGCGGCACCAGCTCACGATCATGGTGGACTGCGAGGACCACGTCGCCGCCGCCGAGGCCGCCGCACGGGCTGAGGGGCAGCGGCTGAAGGTGTGCCTCGACCTCGACATCGCTACCGCCATCGGTCCGCTCCGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //