Array 1 94646-95650 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVK01000005.1 Salmonella enterica strain BCW_6290 NODE_5_length_322284_cov_4.96198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94646 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 94707 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 94768 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 94829 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 94890 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 94951 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 95012 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 95073 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 95134 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 95195 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 95256 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95317 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95378 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 95439 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95500 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 95562 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 95623 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111919-113961 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVK01000005.1 Salmonella enterica strain BCW_6290 NODE_5_length_322284_cov_4.96198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111919 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 111980 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 112041 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 112102 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 112163 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 112224 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 112285 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 112346 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 112407 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 112468 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 112529 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 112590 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 112651 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 112712 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 112773 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 112834 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 112895 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 112956 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 113017 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 113078 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 113139 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 113200 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 113261 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 113322 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 113383 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 113444 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 113505 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 113566 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 113627 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 113688 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 113749 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 113810 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 113871 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 113932 29 96.6 0 A............................ | A [113958] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //