Array 1 39791-38237 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNS01000012.1 Escherichia coli strain MOD1-EC6910 MOD1-EC6910_12_length_153073_cov_37.5376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39790 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39729 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39668 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39607 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39546 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39485 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 39424 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 39363 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 39302 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 39241 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 39180 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 39119 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 39058 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 38997 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38936 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38875 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38814 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 38753 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38692 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38631 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38570 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38509 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38448 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38387 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38326 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38265 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66495-65490 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNS01000012.1 Escherichia coli strain MOD1-EC6910 MOD1-EC6910_12_length_153073_cov_37.5376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66494 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 66433 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 66372 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 66311 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 66250 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 66189 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 66128 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 66067 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 66006 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65945 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 65884 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 65823 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 65762 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 65701 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 65640 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 65579 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65518 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //