Array 1 1004763-1002740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHWN010000001.1 Mesorhizobium sp. RMAD-H1 Ga0299762_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1004762 33 100.0 34 ................................. CCACAGTGGGTTTTCCTCTACCCACTCGAAATAC 1004695 33 97.0 30 T................................ CCGCGTCATGCGGACGATCTGATACCCGAC 1004632 33 97.0 33 G................................ CATCAATGTCGAGGCGGCAGGCGTTATGGAAAT 1004566 33 100.0 31 ................................. TCCCCAGAACCTCACCGCCGCCACCGTCAAC 1004502 33 97.0 33 A................................ CCCGGCGAAGCGGGTGAGGGGCTGCGCGCCATA 1004436 33 97.0 34 T................................ GCGCTATCTCCGCCGCGCGCTGGTCTCGGGCCAT 1004369 33 97.0 35 G................................ CAGCACATCGTGCCGGCGAACGGTGCGGTGTGGCT 1004301 33 100.0 33 ................................. TCTGATAGGACGCTATTCGCTCTTCAGGCGTCT 1004235 33 97.0 34 G................................ ACCGATATCTATCTGGCGCTTGCGTCTATCATTC 1004168 33 100.0 33 ................................. CATGAAACGATAAAGGCGCGCTGGCCCGACGTA 1004102 33 97.0 34 A................................ CGCGCAGATGATGTTCACAGTGTCGTCGGTGACC 1004035 33 97.0 33 T................................ CTGTCATCTCGTCCTTCGATCGCGAGAGCGACA 1003969 33 97.0 34 T................................ TGTCAGAAATCATCGAGGGCGCAAAGCATTACGG 1003902 33 97.0 33 T................................ TTTTCGAGCTTTATGGGCGAATTCGGCCGTTCC 1003836 33 100.0 33 ................................. AAGATCAACGACCGGTGAGCCTTCAAGGCATTC 1003770 33 97.0 33 G................................ ACTATCTGGCCGAAAAGCTCGGCCGCGATCATA 1003704 33 97.0 33 G................................ AGCGGCTCAAGCCCCTCGGCGACCCGGTGCTGA 1003638 33 97.0 34 T................................ TGAAACATAAGCATGCTGGCGTTGAACATCGCCA 1003571 33 97.0 33 T................................ TTTGCGGCGTCTTTTGGGGCGGCCGACGGCGCG 1003505 33 97.0 34 T................................ GTGGAATTCAATCTGCGGGGAGGGTGAAGCATGA 1003438 33 100.0 33 ................................. TCGCGCTCGGCGCGCTTGGCCGCGACCGCCTCT 1003372 33 97.0 32 G................................ CACGCGCCTCGCGAGAAAAGGCGCGCGGCGTG 1003307 33 97.0 34 A................................ ATTTCGCGAGGTCGATGAGTTCAGCCAAGCCGAA 1003240 33 97.0 34 A................................ CGGGCCGTAAAGGGTTTTGTTCGAACTGCCATAT 1003173 33 97.0 35 G................................ GACCCCGAGACCGCAGAGTGGAACATGGCGGCGCT 1003105 33 100.0 37 ................................. GGCGGCATGTTCGGGCGCGACGTGCGCTCGATCCAGA 1003035 33 100.0 33 ................................. CATGCGACAAGCCTGTGAGACTGCCCGACCGGG 1002969 33 97.0 32 A................................ TGGTGGACGGAGGAGCCGCATCCGCTGATCTT 1002904 33 97.0 34 A................................ GTGGTAACCCTCCTCACGATCGAGGCGACCATCA 1002837 33 97.0 32 A................................ GCCAAGAAATACGCCAAGGCGTTGAGGAACTG 1002772 33 90.9 0 G.G........A..................... | ========== ====== ====== ====== ================================= ===================================== ================== 31 33 97.6 33 CGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Left flank : TCGGAGCCGGCATCGGCGGCTGTTGATCCGGGACCGGCTGCTTCGGATCAGGCATGTCGGAACTCCTTTCTTTTGAGGAAACCCGATTGCCGGCGCATTGTTCCCCGACTATGGCCAGGACGTCAGTTTCCATATTTGAAATCGAAGTCACCCCGCAGAATGAACCTTGCTCAAGGCACGCCTCGAAGGCATCATCAAGCCGAGCCGGATCATTCGGCGCTGTTGCCGTCTCGGTGCGAACCGGCAACGGCGCATCGAACATGTCGGCGCGAAACCAGCAACCGACTTTGCCCGGCCGCTGATCGTCTGAGCCGGGAACGATATGCGCGAACCATAAGCGTGCCGCATGGCCCCGGGAGGTTCGCACGGGACCCAGATCTTTGAAATCGTGAAGATTATTTTTCAGCCTGCTACTCATAGCGGGACCTTGCGCAGGGCTGAGGCCAAGTTCGCGCTTTCATTCCTGTTTCCAATATTTTGGCAATTCGTTAGACAGAGGC # Right flank : CTTTCACCGTTGATATCTCCTGCAGCGCTCAGGGCCGCTCTGCGAGAATCGATCGCGATGCTGCGGTCGTTCTCAGGCTCTCATGCCATGTGAGCCGGCATCGTGAATGGCTGCCTGTGGATAATCCGGAGCCACGGCCGGGCATCCAGGGGAGATCTCCTGCCATTTTCCGCCAGGAAACGGCGCAAGCGGTGGGGAAACCTCCACTTTTGTTCCTGCAGCTCGATTTAGGCCTTGCGTCCGAACCCCGGAGATTATAGGGCTTTCGGCGGTTCGGAGCGTAGCGCAGCCCGGTAGCGCACTTGACTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATTATCTTCCGGAATTCAGGAATGAAGACCGCGCTTCAGCGCGGCTGCGATCGGAGCGCACGGCGTCCTGATCCGCGACCTTGCAGATCAGCCATCATATTCTACCATGCATTAAGCATGACGACCGATTCAACGCGTGATTGTGCATCG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //