Array 1 21247-23105 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRI01000005.1 Actinomyces naeslundii strain MMRC12-1 MMRC12-1_contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21247 29 100.0 32 ............................. CTGGTCAACGCGGTCATGCCGGTGATCGTGCA 21308 29 100.0 32 ............................. CCGCGCTCCCCCTCCGCCCACTTTGGAGACTC 21369 29 96.6 32 ............................G CCGAGGCCCGTGATCGACTGGCCTGGGGCTGA 21430 29 96.6 32 ............................G GAGGGCCACGGAGTCGTCCCCGTCCTTCACCT 21491 29 96.6 32 ............................G CCGACGACCTCGTGACCCATGTACCCGCCCAT 21552 29 100.0 32 ............................. GTAGAGTCGTGGGACGTGCTGGATGCGGCCTT 21613 29 100.0 32 ............................. GGGTCTCAGCGATCCACTCAACGCCGAGGCGG 21674 29 96.6 32 ............................G GCCGCCATAGGCCCGTAGACGGCCGAACGCCC 21735 29 96.6 32 ............................G TCGGTCCTGAGCTCAGTCTCCGGCATGACCCG 21796 29 100.0 32 ............................. CACTGCGAGACGACCTGCGGCGAGGTCAGCCG 21857 29 100.0 32 ............................. GAGGCGTAAGCGGCCTCAGACTCGCCGTCCTG 21918 29 96.6 32 ............................G CGAGGACACCACCATGTCGTCCTCCTGCCTCA 21979 29 100.0 32 ............................. GCGGGGATCGCTGCGACTCAGGCGGGCGCCGA 22040 29 96.6 32 ............................T CTGGGCGGGCCGAATACTATTGTACGGTCCGT 22101 29 96.6 32 ............................T CGGGTAGATCTGGCGATCGCCACCCCACATGA 22162 29 96.6 32 ............................T GTTTGACTTCATCACCGCACCCACCACCCGCA 22223 29 100.0 32 ............................. CTTTTTCAACCGGTCACCGGACATCCCCATGA 22284 29 96.6 32 ............................T CATCGGCAATATGGGTGGCGCGATAGCTGATC 22345 29 100.0 32 ............................. CAGTTCTGGTTTCTGTGGACGCATACTGATTT 22406 29 93.1 32 ......T.....................G AATGATGTTGCGCGCACCCGCTTCGGCAAGTT 22467 29 96.6 32 ............................G ATCTTCAACTCCTTCATACCGTCGTAGGCGTC 22528 29 96.6 32 ............................G GTTATCGCGGACTTCACTGCGACCCTCATCAA 22589 29 96.6 32 ............................G GTTATCGCGGACTTCACTGCGACCCTCATCAA 22650 29 96.6 32 ............................G GTTATCGCGGACTTCACTGCGACCCTCATCAA 22711 29 100.0 32 ............................. GGCAGAAAGCCACGGCCACCGAAACGCAAACG 22772 29 96.6 32 ............................G CCATCGGGAACGAACCCGATACCCCAATTACA 22833 29 100.0 32 ............................. GAGTGAACCGCAGCGGCGTTGTAAGCCGGAGT 22894 29 100.0 32 ............................. GCCGTTGCCGATCGCCCGCAGGAACCCCCGCA 22955 29 100.0 32 ............................. GGATGCAGAAAGCCGAGTTAATAGGCGCGATC 23016 29 100.0 32 ............................. GCCGGGGACCTGGACGACAAGGCGTCCCCGGG 23077 29 93.1 0 .......................C....T | ========== ====== ====== ====== ============================= ================================ ================== 31 29 97.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTACGCCGGAGAGGACGCAGGAGGGTGGTAGTCCTGATTCTTTCTGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTGGAGGTCTCTCCCGGGGTCTTCGTTGGGCATGTTTCAGCTCGAGTACGAGAGCAGCTGTGGGAGCTAGTGCGCGCATACATCGGGGAAGGTCGTGCGCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCCTCTCTGGGGCACGAGCGTGAACCGGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGACAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGGCGCTATCGGAGCTCTGCGGAGCGAGCACTAGGTCGGCAGTGAAGGCAAACGCGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : TGGACGTCAAGGGAGGTAGGCCGTAAGCGTTGAGTAAACCCACGGGAGTTTGGACAATCTAGCGGACCTGGCTCGGACGACAGGTTCATGTATCTGGTGCGCTTGGTTCAGGATGAGCGCAAGGCCGCAGGCCTGCACGTGGGGGACCGGATTCGTCTGGAGCTGAGGGTCCCGGAGGACAAGGGTGCCTGGACCGGTGCCCATCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGACGCCTCCGTCGTGGCGGACCCGGCTGCGAAGGAGCCCACCGCCACAGTCGAGAAGGTCGTCGAGATGGCCACGGAGACGACCGTGGAGACGAGCGAGGCCTGATCCAACACGCCCAGTCGATTACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGACCACCAGGGTCTGGTCGGGCAACGGCGCGTTCCTGTTCCCCCAGGACCGCCTCTCTCATCTCCCTAGCCGGTACTTGTCAGGCCGCCGAGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //