Array 1 15890-16818 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJDX01000001.1 Pasteurella multocida strain 232 NODE_1_length_187320_cov_198.495026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15890 28 100.0 32 ............................ AACTGTTAAAACGTCAGCAGGACATCTATAAG 15950 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 16010 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 16071 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 16131 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 16191 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 16251 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 16311 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 16371 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 16431 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 16491 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 16551 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16611 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16671 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16731 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 16791 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 93384-91315 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJDX01000003.1 Pasteurella multocida strain 232 NODE_3_length_198995_cov_230.905334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 93383 28 100.0 33 ............................ CTTTTGCTCTAAAAATTGGGCGTGGCGTTGTTC 93322 28 100.0 32 ............................ TGTTGCATGGGGTCGTATAATTTAATAAAAAT 93262 28 100.0 32 ............................ AAGTGCCGTTGTCTTGCAACTTCAACTGATAA 93202 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93142 28 100.0 32 ............................ CTTGCTTTTGGGGCAATAAAAAAGCCCACAAC 93082 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 93022 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92962 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 92902 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 92842 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 92782 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 92722 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 92662 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 92602 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 92542 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 92481 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 92421 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 92361 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 92301 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 92241 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 92181 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 92121 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 92061 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 92001 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 91941 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 91881 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 91821 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 91761 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 91701 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 91641 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91581 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91521 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91461 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91401 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91341 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.1 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //