Array 1 625-170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRT010000018.1 Nocardia farcinica strain N-29 NODE_18_length_144399_cov_44.382888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 624 28 100.0 33 ............................ CGGCAAGTGGCGGAGATCACAGGAATCGCCCGG 563 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGAAGAG 502 28 100.0 33 ............................ CGCTGTGTGGTCGCAGTCGGCGGTGAGCGGCGG 441 28 100.0 33 ............................ CTGGGCCAAACACCTCGGCGTCCCGCTCCGGAA 380 28 100.0 33 ............................ CGCGGCGCTGGCGCAGCAGGCGTCGCGGGTGGA 319 28 100.0 33 ............................ CAGGTCGGTGTCGAACGCCTGCGTTTGCACACC 258 28 100.0 33 ............................ CCCGCGCTCGTGCCGGTATCCTGACGCTGTGAG 197 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCCGCTTGGTCAGTTCGTCATCGGCTGCGGACATGTGCTCCCCGTGTCAACGGCCAGTTTGATGTCCCCGCTGGTGGCCAGGTAAAAGTCCCCACCCTGTGCGGGATGTTCTAGGTCGGTGGCACCTCCGTTCGGTGTGTCATGCGGTAGGAGTCGCCGTCGGTGATGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 133286-131672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRT010000018.1 Nocardia farcinica strain N-29 NODE_18_length_144399_cov_44.382888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133285 28 100.0 33 ............................ ACTGTGATTGACAGTGTGGAAATCTACGTATGC 133224 28 100.0 33 ............................ CGACACGACCCTGCAGCGGATCGTGATCGCCTG 133163 28 100.0 33 ............................ CGCCTTCGACCCGGCCGACATGACCGCCGCGTC 133102 28 100.0 33 ............................ CGCAGGCGCGAGCGCAGCTCGCGAACGACGGCG 133041 28 92.9 33 ..........................AA ACCGGCGTGCGGGAAAAGGTGCAGGCCGTGGTA 132980 28 100.0 33 ............................ GGCGAGACCCACGGCCGCACCATCGGCATCGGC 132919 28 100.0 33 ............................ CGAACTCCACCGTGCTACCGTCGTCGACGCCGC 132858 28 100.0 33 ............................ CCACCACCGGCGGCGGCGTGAACTCGGCCGGGG 132797 28 100.0 33 ............................ CGGCGGCATCACCCGCACCGTCACCATCCAGCT 132736 28 100.0 33 ............................ CCTTGACCGGGGTGTTCGCGCGTTCGGCTTCCC 132675 28 100.0 33 ............................ CCAGGCCGTGGCCGACACGTCGTAGACGCCGGT 132614 28 100.0 33 ............................ GTCGACGTAGCCGATGAGCGGGCGGGTGGCGTC 132553 28 100.0 33 ............................ CTGGTGCACGGTCAGCAGGTGCGGGGCGTGCTC 132492 28 100.0 33 ............................ CGAGTGGCGCGCCGAAGCACGCCGCAACACGTG 132431 28 100.0 33 ............................ CCGCCGGCTGCACCTGCCGCGACCCGGCCGAAA 132370 28 100.0 33 ............................ CGCCTCGAACCAGGTGCGCATCCCGGCCGCGAC 132309 28 100.0 33 ............................ CTCGAGCCGGGCGACGTTGTAGGCGTGCGCCGC 132248 28 100.0 33 ............................ CATCCGCGACATCGCGGGGGTCGACGACAATTC 132187 28 100.0 33 ............................ CACAGCGGCCTGGTCGTCCCATGGGGCGCTGAG 132126 28 100.0 33 ............................ CGACAGGGGAGACCTGTCCGGTGTCCGCACCGT 132065 28 100.0 33 ............................ CCGCGATGCGCCCGAGCTGCAACGCCTTCCCGC 132004 28 100.0 33 ............................ CTGGAACTGCGACGAGTGGTTCTCCTGCGGCGA 131943 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 131882 28 100.0 33 ............................ CCGGTCCTCACCCGTGTCGGGCCCGCGGTACTG 131821 28 96.4 33 ........G................... CTCGAACGGCAGCGTCCAGAGGTCGCCCTCGGT 131760 28 100.0 33 ............................ CCAGCCAGCAGCGAATGCGTTGGCGGTCAGCAT 131699 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.5 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTTGTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCCCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCCAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAACGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGGGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGCCCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGTGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGTCGACGTTAGGTAACGACTGCGTACACCTCACCCCCCGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCTGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCGGCGTTCTCGGCGCCCGGTCTTCCGGTCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 143243-142469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRT010000018.1 Nocardia farcinica strain N-29 NODE_18_length_144399_cov_44.382888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 143242 29 100.0 32 ............................. CGGCGCCCGACTGCGCATGCCTACTGTCGGAC 143181 29 100.0 32 ............................. CCCGAGACCGGCGGCTGGTACGACCCGACGAC 143120 29 100.0 32 ............................. GGGTGCCTATGCGGGGCGTAGACACCCGAAGC 143059 29 100.0 32 ............................. AGGTAGGAGAACAAGTCCTGGATCTCGGCTTC 142998 29 100.0 32 ............................. ATCCCGCGCTGCGTCGGCGAGGTGGTGGCGTC 142937 29 100.0 32 ............................. GCGCGCCGAGATCAGCCGTACTTCCACGAGAT 142876 29 100.0 32 ............................. GAAACAGCCACTGCGCCTCCTAGAAGATCAGC 142815 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 142754 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 142693 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 142633 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTAACAGCGGTACCA 142572 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTCGAC 142496 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= =============================================== ================== 13 29 97.4 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCACGAAGTCGGCCGTGTCGTCGGCGTGCTCCCAAGTGCATACGGGATGAGCCGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGAGCGCGCGTCGTAAGGCACGTTGCACCAGCGACCGCGTGGCGAAAATGGTTCAGCGGTCAGCGTGCACCTGCTGGTATTCGGCCAGGTCGGCCATTAGTGGACCATCACAAGCTAGGCGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGGCTCGCGAGTAGGAACGAGGCCTACGACCGTGAACGGGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACCGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GATCCGCCGCTCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGTAACGCCACCCCGCCGTGTGCGCCCCACGCGTGCAGGCAGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTCTGGTTTAACTCCTGCAAAATCGGGTAACGCTTGCTACCCTCGCTCATGTCCCGCCGCCTAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACCGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGGCATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGAATCTCGGTTGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 144198-143689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRT010000018.1 Nocardia farcinica strain N-29 NODE_18_length_144399_cov_44.382888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 144197 28 100.0 33 ............................ CCCGGCGAGGTCACCGAAGTTCCGGGCGGTTGG 144136 28 96.4 33 .........T.................. CGCGCCCACCCCCTCGGCGCCTGGCGCCTGGTC 144075 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 144014 28 100.0 33 ............................ CAGCCACGCCAGATGTGTCGGAGTATGGGCCTT 143953 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 143892 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 143831 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 143770 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [143717] 143716 27 85.7 0 ........A.T....A....-....... | A [143708] ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 32 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TCACCGTCATCGCCTGGGCCCTCAGTTCCGGGTCGACACGACGAACACAGGGTGGGGACTTTTATCTGGCCACCAGCGGGGACCTCGACCTGGCCACCAATGGGGACTTTCTCATGGCCATGGACAGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAG # Right flank : GCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGAGCGCGCGTCGTAAGGCACGTTGCACCAGCGACCGCGTGGCGAAAATGGTTCAGCGGTCAGCGTGCACCTGCTGGTATTCGGCCAGGTCGGCCATTAGTGGACCATCACAAGCTAGGCGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGGCTCGCGAGTAGGAACGAGGCCTACGACCGTGAACGGGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACCGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGTGTGCTCCCCGCGCACGCGGGGATGAGCCCCGGCGCCCGACTGCGCATGCCTACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : GTGCTCCCCGCGCATGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 123-1188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRT010000025.1 Nocardia farcinica strain N-29 NODE_25_length_89905_cov_43.632248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 123 28 89.3 33 .GA.A....................... CCCTTGCGCCCGGGCTCGTTCGGTGTTGGTGAG 184 28 100.0 34 ............................ CTACACCGTGAAGTGCCGCATCACCACCACCCAA 246 28 100.0 33 ............................ CAGCGCGGCGACGAACCATCCGCGCTCGACGAA 307 28 100.0 33 ............................ CCGGTGCGCTTGTACGTCTCCTCGTACGGAATG 368 28 100.0 33 ............................ CTCGAATGCGGTGGCGTCGTCGGCGCCGGCGAT 429 28 100.0 33 ............................ CCGACCGAACCGGCCGGTCAACTCGACAGAGAA 490 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 551 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 612 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 673 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 734 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 795 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 856 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 917 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 978 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 1039 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 1100 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 1161 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TTCACCGTCATCGCCTGGGCCCTCAGTTCCGGGTCGACACGACGAACACAGGGTGGGGACTTTTATCTGGCCACCAGCGGGGACCTCGACCTGGCCACCAATGGGGACTTTCTCATGGCCATG # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGGTCCTCGACCCGCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10148-10905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRT010000021.1 Nocardia farcinica strain N-29 NODE_21_length_117325_cov_42.688954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10148 29 93.1 32 .....A........T.............. GGCTCCTGATGTCCACCACGGGCACGGTCGAT 10209 29 96.6 32 ..............T.............. TGGCAGGCTCTGCGCAATGCCGGCCACAGCTA 10270 29 96.6 32 ..............T.............. TGCTTGTCGGTGAACACTGCCACGACCACTGC 10331 29 100.0 32 ............................. AACCCGGATCAGCGGCACTTCTACAAGTCGGA 10392 29 100.0 32 ............................. ATCGAGAAGCTCACCGTCGCGACGCTGAGCAT 10453 29 93.1 32 ...........T................A CGCGGCATCGGCGTTCAGGGTCAGACGGAGTG 10514 29 96.6 32 .......................A..... CGGTGTAGCGGCGGCCGCGCTCGGCGTCGTCG 10575 29 100.0 32 ............................. AGCAAGTCCTCGCCGACCTGGAAACCGATCTG 10636 28 93.1 32 ..............-.............T GCCGTCCCGCAGGACTCGGTTTTCGTGGATCG 10696 29 100.0 32 ............................. CGGTGTCGGTCACCAGCTATCAGAAGGCTCGC 10757 29 96.6 31 ..........................T.. AGTCATGAGCCGCCGCCGGGTCCGGTGTCCA T [10783] 10818 29 93.1 31 ...A..................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 10878 28 79.3 0 ....CT.......-G.GA........... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.2 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTGCAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACGTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18099-18920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRT010000021.1 Nocardia farcinica strain N-29 NODE_21_length_117325_cov_42.688954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18099 29 100.0 32 ............................. GATCGCGCGGCCAGTCGCGGCCATCGCCGCTT 18160 29 100.0 32 ............................. TGAATCCGCGACCGAATCCAAGAGCACCACCA 18221 29 100.0 32 ............................. TACCCCGCGGCCTGGAAGCCGTAGGGGCTCAA 18282 29 100.0 32 ............................. GGGGCGCCTGAGCGTGACGGCACCCGCCACCG 18343 29 100.0 32 ............................. TCATCGCCGCAAAAGCTCATTGCCAGGGTGGT 18404 29 100.0 32 ............................. TGGCGGGCGTTCGCGCTGGGTTCGATGTTGCG 18465 29 100.0 32 ............................. CCAGGCCAGTGCCTCCTGCGCCAGTTCCACCG 18526 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 18587 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 18648 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 18709 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 18770 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 18831 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 18892 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGGGGCGCCACCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //