Array 1 2001980-2001404 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483485.1 Aggregatibacter aphrophilus strain NCTC11096 chromosome 1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=================================	======================================	==================
   2001979	    33	  97.0	    38	................................C	GCTTCCGGCAACCCGATGCTGATGCGTAAATGGTTCGC	
   2001908	    33	  97.0	    36	................................C	GCAACAGGTTTTTCTGCAAAAGTGCGGTCAGATTGC  	
   2001839	    33	  97.0	    38	................................C	GCGGTTACCGGCAAGCCGTTTTGTTCTAAAAGTTTTGC	
   2001768	    33	 100.0	    34	.................................	TTTGTAAGCAAGAATTATCTACAAACAATGATAC    	
   2001701	    33	 100.0	    33	.................................	ATAGTGCGGTATTAACCGCACAACAACTTGAAA     	
   2001635	    33	 100.0	    32	.................................	GGAACAACAATTAATGTAATCGCACCATAAAT      	
   2001570	    33	  97.0	    33	................................G	TCAAATAGTTCTCCGCCCACGCCTGCTCGTTGT     	
   2001504	    33	  97.0	    35	................................T	TTGATTCCGCAGCTTAATTTTCGTAACTGCTCTGG   	
   2001436	    33	 100.0	     0	.................................	|                                     	
==========	======	======	======	=================================	======================================	==================
         9	    33	  98.3	    35	GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA	                                      	       

# Left flank :   ATGAGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGTGTGCAGTATTCGGTGTTCGAATGCGACATCACGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTGATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTAATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCGGCTGATTTTTCTTGCTTTTTTAGGTAGGGAGC
# Right flank :  CTCATTTTTATTTTTAAACCTACCAAAAAGGCGGCAGCCGCCTTCGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGGTGTATAAGTTTCAAGCCTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTTGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACCGCTCTTTTTGTTGACCTATGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGTAGGTCTTGAATATCCGATTTCAATACATCAGCTTTTGGCCCGTAAATGGCTTGAATGCCTGTGCCTTTAACAATGAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCACCCACCAGCTCAGGGTTGTGAACGGTGATACGTAAACGGGTCATACAAGCATCCACCTCGGCAATATTGTTGCGTCCGCCGAGAAGATTGATGATTTGCACCACTTGCGCACT

# Questionable array : NO	 Score: 5.98
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.70,-5.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.87   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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