Array 1 323394-324093 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMU01000003.1 Salmonella sp. SG143 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 323394 29 100.0 32 ............................. ATCCAATTGGACTGAATGGAGGTATTAACCTC 323455 29 100.0 32 ............................. GCGTTTGATATTACGTTATTCAGTACCACTAT 323516 29 100.0 32 ............................. GGAGAATTGATAATTTAGATAGCAAGGTTGAT 323577 29 100.0 32 ............................. CAGCCCTGCTCTCTGGCAAAAATGAGTGAGCA 323638 29 96.6 32 ...................C......... ATTGGTGAGGGGATTATTGAGCGGCGGTCAAC 323699 29 100.0 33 ............................. CGTTTATCGCCTTTCAGTGATTTCAGCCATGAA 323761 29 100.0 32 ............................. CGGAACCGCTCCGGCAGGACAATTTCATCTGT 323822 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 323883 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 323944 29 96.6 32 ..........T.................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 324005 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 324066 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATCAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 340889-342138 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMU01000003.1 Salmonella sp. SG143 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340889 29 100.0 32 ............................. CCCTTTATCTTGGCTGCCAGAACGAGAACGCC 340950 29 96.6 32 A............................ ACATGGGGCGGTGGTTCGGGTTGTAGGTGATT 341011 29 100.0 32 ............................. TCTATAGCCTCTTTCTGCTTCATCCATGTACA 341072 29 100.0 32 ............................. TCGCTCAAGTTGACGCTGAGATATATTCATTC 341133 29 100.0 32 ............................. CGCGCCAGGCTTGTACTGGACGAGTGGCTAAA 341194 29 100.0 32 ............................. GTATAAGGCGCGGCTTTACTGTGAATCCAGGG 341255 29 100.0 32 ............................. AGGGTCGTAGCTATGTCGTTTAACTTGAGTCG 341316 29 100.0 32 ............................. TTGGGAGAGTTTACGGTAACTATCCAGAGAAA 341377 29 100.0 32 ............................. ATCTGGCCGCAATATTCAACCAACAGGCCTTT 341438 29 100.0 32 ............................. TATACCCGGGAACATGACGGGTATACGGTTGA 341499 29 100.0 32 ............................. ACCTGCCGTGACATGACTCTGCCGGAGCTGGA 341560 29 100.0 31 ............................. ACCAGGGGGTTTTTCCACGTATCGCCGCTGC 341620 29 100.0 32 ............................. AGTACAATGAGCTGATCTCAGCGGCTAAAACT 341681 29 100.0 32 ............................. GTCAAACGAAATTACACACAGACCCACGCTAC 341742 29 100.0 32 ............................. CGGAAAAGCGCAAGCCGCAGGTACGGGCAAAA 341803 29 100.0 32 ............................. AGGATGCGGGCAATCCGGCCAGTTTTCTCGTC 341864 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 341925 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 341986 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA G [342007] 342048 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 342109 29 96.6 0 ............T................ | A [342136] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //