Array 1 54463-53655 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJDQY010000028.1 Pseudomonas aeruginosa strain M0002 assembly_contig_28, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     54462	    28	 100.0	    32	............................	CGGAGTACTGACAGCCCACCGACTCCCTAGAG	
     54402	    28	 100.0	    32	............................	CGACTGACCCTAACAAGCCCGACGAGCACGGT	
     54342	    28	 100.0	    32	............................	TGATCGAGCCGGGCCTTGGCCGGTTCGTCTAC	
     54282	    28	 100.0	    32	............................	TTCGACATGTTCGGATCAGCCTTCGCCATCTT	
     54222	    28	 100.0	    32	............................	TGCCGGTAGCAGGGCATCAACAGACCAAACAC	
     54162	    28	 100.0	    32	............................	GTCGACGTCGATGAACGCCGCGCACGGATGGA	
     54102	    28	 100.0	    32	............................	TTGCTAAGCATCCACTGTGCCGCTCCTGTAGC	
     54042	    28	 100.0	    32	............................	TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT	
     53982	    28	  96.4	    32	.............T..............	ATACTGACTCAGCCAGGGAAAAGTCACTTGGA	
     53922	    28	  96.4	    32	.............T..............	AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT	
     53862	    28	  96.4	    32	.............T..............	TGGTCGAACAGATGGCGGTCCTCGGCCAACTG	
     53802	    28	  96.4	    32	.............T..............	ACGTCGGAACGCAACTACCTGACCGCGTTGGT	
     53742	    28	  96.4	    32	.............T..............	ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT	
     53682	    28	  96.4	     0	.............T..............	|                               	
==========	======	======	======	============================	================================	==================
        14	    28	  98.5	    32	GTTCACTGCCGTACAGGCAGCTAAGAAA	                                	       

# Left flank :   CCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT
# Right flank :  CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTAAGAAA
# Alternate repeat :   GTTCACTGCCGTATAGGCAGCTAAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [0-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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