Array 1 419672-421957 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGA01000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain 58-5818 NODE_1_length_549581_cov_2.83171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 419672 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 419733 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 419794 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 419855 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 419917 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 419978 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 420039 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420100 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 420161 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 420222 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 420283 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 420344 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 420405 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 420466 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 420527 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 420588 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 420649 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 420710 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 420771 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 420832 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 420893 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 420954 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421015 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421076 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 421137 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 421198 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 421259 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 421320 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 421381 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 421442 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 421503 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 421564 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 421625 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 421686 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 421747 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 421808 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 421869 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 421930 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439590-441754 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGA01000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain 58-5818 NODE_1_length_549581_cov_2.83171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 439590 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 439651 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 439712 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 439773 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 439834 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 439895 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 439956 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 440017 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 440078 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 440139 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 440200 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 440261 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 440322 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 440383 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 440444 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 440505 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 440566 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 440627 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 440688 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 440749 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 440810 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 440871 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 440932 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 440993 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441054 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441115 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 441176 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 441237 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 441298 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 441359 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 441420 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 441481 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 441542 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 441603 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 441664 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 441725 29 100.0 0 ............................. | A [441752] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //