Array 1 2-2664 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADN01000029.1 Xanthomonas translucens pv. poae strain ATCC 33804 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 2 31 100.0 36 ............................... CCGTAGATGACGCCAAGCACTGGATCGCACACGTAG 69 31 100.0 38 ............................... CACTGGGCCGCCGCCGGGTCCGCTGATCTCCTGCGACA 138 31 100.0 34 ............................... TCGTGCTCGGGGTGGTGCTCGTCCTTCGCCGCCG 203 31 100.0 35 ............................... TTGCCGCCGCTGTATATCGCTGCCTTCGGTGCGGT 269 31 100.0 36 ............................... TTATTAAGCGTTCAGCGCGCGGCCCGCGCCAAGGTC 336 31 100.0 35 ............................... ATTTCCGCCGACCTCACAGGTAACGTAGGACCGCG 402 31 100.0 34 ............................... ATAAGTAAGCGCGCTGCAGTACGTCCTCCGGAAA 467 31 100.0 33 ............................... CGGAACGCCCACGCTTGCGGGCTGGGGTATCCT 531 31 100.0 33 ............................... TCGTATCCGCTTTCGCGACGTCAGCGTTGGCAT 595 31 100.0 35 ............................... TGCCGGATGATCGTGGAGACATTCTTAGCGTTAAG 661 31 100.0 35 ............................... TTCGTGATGCCGCGATCCACCGCCCACAAATGTCC 727 31 100.0 35 ............................... ATTGGTCGTGACGTGGTATTTGCAGACGCAGCACA 793 31 100.0 35 ............................... GAGGAGTTCGGTGGCTTGTTCGCCAAGGGCCAGAA 859 31 100.0 37 ............................... TTGAAGAAAGGTGCGCGGCAGCAGTGGGAGTCGCGGG 927 31 100.0 33 ............................... AAGAACGACACGGGCAGCGCGAAAGACCTTGCG 991 31 100.0 35 ............................... TTGACGTTAGGCGAGTCCGCAGAGCGCGCGGACAC 1057 31 100.0 35 ............................... AAGGGATTGCCGTGCTACGACTACGCCGCATCGAA 1123 31 100.0 35 ............................... AGCCGGCTGCGCACCGAGGAGCGGCACTTCGTGCA 1189 31 100.0 35 ............................... GTCGGCGCTAACGCGATTGTTGCCGCTCTGCTGCG 1255 31 100.0 34 ............................... GTGTTTTGCCGCTACCACTGATCCCGGCGAAGTT 1320 31 100.0 34 ............................... GCGGACACGTTCGGATGGCAGGAAATCACGATCA 1385 31 100.0 33 ............................... ATCGTGTGGCGCGTTGAATTCGTGATGACCACA 1449 31 100.0 35 ............................... ATCGCGACGGTGACCACGATTTCCGCTGTCGTCAA 1515 31 100.0 34 ............................... AGGGGCTTGGCGGCGGGTCCATGATCGGGCCAAA 1580 31 100.0 34 ............................... ACAAGCTAGAGGCGATTAAAGATGGCTGCATATT 1645 31 100.0 33 ............................... AGCTCGAAAAGCGAGTTATCGCCGCTCTCTCTC 1709 31 100.0 43 ............................... CTTNNNNNNNNNNGAACGTAAAGCCCGCGAAGTCGCCGACCGC 1783 31 100.0 34 ............................... CTGTACCGAATGACGACGTACCCGATGCTGTTTC 1848 31 100.0 33 ............................... CTTGTAATACGACAGCGCCATCGAAATCTTAAG 1912 31 100.0 35 ............................... TTCCGGCATCTGGCGCAGAGTGTGCCGCCTCCCGC 1978 31 100.0 34 ............................... CGCCTGCCTGATTTGCGTGGAGAATTCGTCCGCG 2043 31 100.0 33 ............................... GACTTATGGCGACGGTATTGATATCACGGTTAT 2107 31 100.0 35 ............................... AGGATGCACCTGGTCAACGATTACGTAACGGAAAT 2173 31 100.0 35 ............................... CTGACCCCGTGGGCGCCTGCAAAAGCACTCGGCGG 2239 31 100.0 36 ............................... GCGGATAGTGCTCCCGTGCCCTGCGCGTCTGCTATC 2306 31 100.0 34 ............................... ATCACGTTTACGCTTACGCCGTGGATTACTCGCA 2371 31 100.0 33 ............................... ATGTAGTGCGCGATGACCTTGGCGGTGGTGTTC 2435 31 100.0 35 ............................... TGACGGCCGTCCATCGAATGCTGACGCGTCACGGG 2501 31 100.0 35 ............................... CCGAAGTGGGCACCACTGCCTCAAACGGGACGGTG 2567 31 100.0 36 ............................... CGATCCGGACCTTATCACCGGCCATAGCGGCGACGC 2634 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =========================================== ================== 41 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGGGGAAACGGACGCGAACCACCCAGCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACTAGTTGCTCCGCCGTGAGCGGCTCCCGGTCAGGCTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACATAGACTCTCTTCGGGCATCCAAACTTTAAGACAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAACGGTGCGTCCACCAGGGAAAACAGCTGGCTACCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGTGCACGTTGTGGTCGAACTCGTAGCTGTTGTTGTCGCGTCCTCACGGGCGCGTGGATTGAAACGAAAACAACAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2855-3283 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADN01000029.1 Xanthomonas translucens pv. poae strain ATCC 33804 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2855 31 100.0 36 ............................... TAGTTGCTCCGCCGTGAGCGGCTCCCGGTCAGGCTG 2922 31 100.0 35 ............................... ATAGACTCTCTTCGGGCATCCAAACTTTAAGACAG 2988 31 100.0 35 ............................... AACGGTGCGTCCACCAGGGAAAACAGCTGGCTACC 3054 31 100.0 35 ............................... GCGTGCACGTTGTGGTCGAACTCGTAGCTGTTGTT 3120 31 100.0 35 ............................... GAAAACAACAATTGCTGGGCGATGGTCGAGGAGTC 3186 31 100.0 36 ............................... AAAGGAGCGGGACACGCTGCGGCGGCCATACGGCAG 3253 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 100.0 36 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CCGTGGATTACTCGCAGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGTAGTGCGCGATGACCTTGGCGGTGGTGTTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGACGGCCGTCCATCGAATGCTGACGCGTCACGGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCGAAGTGGGCACCACTGCCTCAAACGGGACGGTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGATCCGGACCTTATCACCGGCCATAGCGGCGACGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGGGGAAACGGACGCGAACCACCCAGCC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGATGTGAACCGGCTCACTGGCGATTGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGCAGTCCAGTTTCGGGCCGCTGTGTGATTGCTTGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGATATCCCTGGAAGGGCAATACTTGCCGGACGGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACAACTCCGCAGCGAAGCTCAGCGAAGAAAAGGTTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTACACATACAGCTTTGAAGATGTCTTGCGTTACGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGGATCGACAGCTTCGCATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3470-4089 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADN01000029.1 Xanthomonas translucens pv. poae strain ATCC 33804 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 3470 31 100.0 34 ............................... CGCAGTCCAGTTTCGGGCCGCTGTGTGATTGCTT 3535 31 100.0 35 ............................... CGATATCCCTGGAAGGGCAATACTTGCCGGACGGC 3601 31 100.0 34 ............................... AACTCCGCAGCGAAGCTCAGCGAAGAAAAGGTTG 3666 31 100.0 34 ............................... TACACATACAGCTTTGAAGATGTCTTGCGTTACG 3731 31 100.0 34 ............................... CGGATCGACAGCTTCGCATTGCCGCACAGCTTGG 3796 31 100.0 33 ............................... TTGCTGTGTCCGCGCTGCCCTTGATACGGTTGC 3860 31 100.0 36 ............................... GAAACGGCCATGCTTGGCATCGCAAGGCAGGTAAAC 3927 31 100.0 35 ............................... CTGCATGGAGTCGAAGTCCTAAACATCGACGACGG 3993 31 100.0 35 ............................... CTTGCGCTTCGCGACCAGCTTGTCCAGCGCGAGGC 4059 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 10 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATCCAAACTTTAAGACAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAACGGTGCGTCCACCAGGGAAAACAGCTGGCTACCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGTGCACGTTGTGGTCGAACTCGTAGCTGTTGTTGTCGCGTCCTCACGGGCGCGTGGATTGAAACGAAAACAACAATTGCTGGGCGATGGTCGAGGAGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACAAAGGAGCGGGACACGCTGCGGCGGCCATACGGCAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGATGTGAACCGGCTCACTGGCGATT # Right flank : CACGCCATGCGCTTCCGGCGCAGCAGCCAGCAGTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNGCGGGCGTAATTATTGGCGGGGTTGCTGTAGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGCACTAGCTTGTGGCATGCCTGGCACAGCCAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTAGCGCTTCTTCCCCCCCCTCCAAACATGAGGGGGTCGCGTCCTCACGGGCGCGCGGATTGAAACGCGTTGGCAGTTCGTCGCGCTGGTGAGGTTTAAGGTCGCTTCCTCACGGACCCGTGGATCGGAAACTGACTTGGCGACGCTGTGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTCCCTAGCGGGACGCAATGCGCATCACTTGACTTCGAATTCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 300-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADN01000037.1 Xanthomonas translucens pv. poae strain ATCC 33804 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 299 31 100.0 37 ............................... TCCTGAGCAAGCCGAGGCGGCGGGCACGCGCACGCCG 231 31 100.0 34 ............................... AGGTGCTCGGACTCTTCGAACTCCGGGACGAACC 166 31 100.0 35 ............................... TCGAACTCGGAAGCGATCCCGATTTCCTCGTCGGC 100 31 100.0 34 ............................... TCGCGCTGTGGAGGATAGGCTCGGATATACAATT 35 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGTCCTCACGGGCGCGTGGATTGAAACGAAACGATCCTGTCCGCAATTGTTGCGGATTTTGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGAGGGGCGCTATCGCAGGTCAGATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCGCGTCCTCACGGGCGCGTGGATTGAAACACCCAGATGTTGGGCCAGATGGGGCCGGGCCTGCC # Right flank : CTCGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1658-905 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADN01000037.1 Xanthomonas translucens pv. poae strain ATCC 33804 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1657 31 100.0 37 ............................... ATGTTGACCTTAGCCGCCTTGCGCACGGCATCAACCG 1589 31 100.0 35 ............................... CACAGAGACCAGACGTAGGCCACGACCGGGAAGGT 1523 31 100.0 33 ............................... TCCACGGTCACCTCACAGAAGGTCGCTGCCAGA 1459 31 100.0 35 ............................... GGTACTACCGCCGCCCCCAGGGATGCGACAGCAAG 1393 31 100.0 33 ............................... CCGTCTGCGGCACCTAATTCACAGCCGTACCTG 1329 31 100.0 36 ............................... AGCTGCTCGGAGTTCATCGCGGCGGATTACCTGGCG 1262 31 100.0 34 ............................... AACGTCATCAAGGCGGCCGGACACTTTTCCTATA 1197 31 100.0 34 ............................... TGCGGCGCGCCGTCGGCGGCGATTACAGCCGTGC 1132 31 100.0 35 ............................... CGCGACAGCCCAGCAGCGAAGGCGGCGCAGTGGCG 1066 31 100.0 34 ............................... CGGTTGAACATGAAGGGGGCGACGATGGCGCCGA 1001 31 100.0 35 ............................... CCCTTCATCCTGCAGACCGGCGCATCGCCGATCCC 935 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 12 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCGCCATGATGGTTTTGGTCAGCTACGATGTCAGCACGAGCTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCGGGCGTCGACAGCCTTCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTTGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCCGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTAAAAGAAAAATATCAACCTCTTCCACTTGCTGGCATGTCCGCGGAAGCCGAATTCGATTGCGTCTCCTAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CACCCATCGAGAACACGCCGGCACAGCCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGTCCTCACGGGCGCGTGGATTGAAACGAAACGATCCTGTCCGCAATTGTTGCGGATTTTGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGAGGGGCGCTATCGCAGGTCAGATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //