Array 1 20330-21889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOGQ010000006.1 Paenibacillus sp. 81-11 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20330 32 96.9 35 .................A.............. TATACCGAAAAATTGCTTATCTTGAGGTATATAAG 20397 32 96.9 36 ...............................G GTGTTTATCCCCGAAGTAACAACAGCAGCAAATCTA 20465 32 96.9 35 ...............................G TGTTTATCCCCGAAGTAACAACAGCAGCAAATCTA 20532 32 100.0 34 ................................ CCAAATGAGGGCGTGATCGAAGTAAGCTATAACG 20598 32 100.0 33 ................................ CAAGCCACCGTATTGTATTGATTGAGTGGATCG 20663 32 100.0 35 ................................ CGAAATGATGAACCAAACGGAGGCGACTATATCTC 20730 32 100.0 36 ................................ AGAATTAACGATATCAAACAACGAGATTGCTTCATC 20798 32 100.0 36 ................................ TTCCAGCAGTCGGTAACTTTCTGTCCTGATGTCCCG 20866 32 100.0 34 ................................ CTTTTTTAATGTACAAATCCTCTATTTCAATTAA 20932 32 100.0 35 ................................ TTTTGGAAAATGATGATATCTAGCGCTGCTGCTAC 20999 32 100.0 34 ................................ TTGCTCTGACTTATTGAGATAAGAAGCCAGGCTC 21065 32 100.0 36 ................................ CGATTCTTGGCGCGATTGCACTCGCGGTAGGCGCAG 21133 32 100.0 34 ................................ TGACTGCTATGGATGCCGTAGCAAATCGTAAGGC 21199 32 100.0 36 ................................ ATTTCAGGAATCGGCAACGGCTCCAGTGAATTCCAG 21267 32 100.0 34 ................................ TCTGGTGTGAGCATAAGTTGTGGATGTAACCATG 21333 32 100.0 35 ................................ TGGACTCATTTGCTGCACAAATTGTTCCATCATGC 21400 32 100.0 35 ................................ CAGATGCAGAATCCATACGGCCTAGGCTGCATATC 21467 32 100.0 35 ................................ GGGATAAGCCCCTCCGTGTCTCCTATGCCAAATAC 21534 32 100.0 36 ................................ CAAAATATCAATGACATCGTTTGAAATATTCTTCAC 21602 32 100.0 24 ................................ CTCCCACACCCGGCCAATATCCTC Deletion [21658] 21658 32 100.0 35 ................................ GAAAAATTATTAAGAACGTCCGTGGTGAGGACGAT 21725 32 100.0 34 ................................ CAGAAACTTATTATAGCAACGAAGGAATATTTTC 21791 32 100.0 35 ................................ TCGTTTGATTGTGCTGTAGTCAAAGGTAAGCCGAT 21858 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.5 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AGCTTGTTAGTCCTTGTTACTTATGATGTAAGCACGACAAGCAGGGAGGGCAGAAGACGGCTGACCCAAGTGTCCAAGAAGTGTTTGGATTACGGTCAACGGGTTCAAAACTCAGTCTTTGAATGTATTCTTGATACGACCCAGTTTCGCCGTTTAAAATATGAGTTGGAAGAATTGATCGACAAAAACACGGACAGTTTGCGCTTCTATAATCTGGGGGACAAGCATAAGACCAAAGTCGAACATATTGGAGTAAAAGCGTCCTACGATATGGAAGGTCCTTTGATTCTCTAAAATGTGAAAATGTGGATGGAAGAAGGTGCGAACCGCAAGCTCCCACGATTTCCCCGGTTCCTTCGCACCTCGAATATTGTCGAAAATTGACTTTTTTATCATGCTTCTAAAAAAGTCAATGATTCACTCATGCTTTTTTTGCAAGATTTATAGCGAGAAGGTGCCAAATTAATACCAATACCGGATTAATTGGGCACTTTTTCGCC # Right flank : TCGTATTGCCAATACTAATCAGAGCAGACAGCGTAATCAAACTCAAATTGCTTTCTCTTGACGGTAGAGCAGGATCTCTCCATACTTGCTCGAACAAAATATTTTCACTGTAATCCACAAAATCGAGAGCAAGCTCTCTCATTTTCTGCGGAATATGGGCTTCGACACGATTATTCACGTTCTTGTTCCTCCTCCAAATTTGCCAATTGCGCTATGCCTTGACCAAATGACCAATTTTCAGCAGATGTCTCGTTTAATGTGATAAAAATATCGGCTGTAGAGATGTTTAGATGATCAGAAATAGCTTGCGTTATAGATTGATACAAACTCCTTTTCTGACTTACCGTTCTTCCCGGCCCGCATGTAATGAATACATGGATCATGTTTTCAGTTCTCTTTGCCGCTCCTTCCAGCAGGTAAGACGGATCGTAAAAAAATTGATTAACGGGGTATGGAACAAACAGTTGAAAGTAATCCTGTTCCGGGACGTGAAAATGTGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 97922-101165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOGQ010000009.1 Paenibacillus sp. 81-11 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 97922 32 100.0 36 ................................ GAAGCGGACGGACAACGCGATATGAGATTCGGGGGA 97990 32 100.0 34 ................................ CATTTGGTTGATTTGTAAAACTCTCGATTCATCC 98056 32 100.0 36 ................................ TAGCTGGTTTAGAGGACATGTGTACAAAATACTTAA 98124 32 100.0 35 ................................ CTTTTACCACAGCACCCAAGGAGGGCGAATAGATC 98191 32 100.0 33 ................................ TTCATCGAGTTCTCTAACCTGCTTAATTGCTTC 98256 32 100.0 35 ................................ TGGTATTGCCATCTCACAGCCCTCCTTATGGTATA 98323 32 100.0 36 ................................ CGTTAGCGTCCTTGTCCAGTTCATAGGTTAGGAACT 98391 32 100.0 34 ................................ ATTGATTCGGTTGGTCAATCAGCAACTGAATATA 98457 32 100.0 36 ................................ GCAAATTGTTGAGCTGTCAATGTCTGCTGACCGTTG 98525 32 100.0 34 ................................ ATGATGCTGAGGCTGTCAAAGCGCTACTTGGTCT 98591 32 100.0 35 ................................ TCCGTTTCTGGAAGAGTTGAGAACAAAATAGAAAT 98658 32 100.0 33 ................................ GTCGTGGATGCCTGTATATGAATACAGTGACAC 98723 32 100.0 36 ................................ TCTCCAAGCCATGATAAGAGCTTGGGCAATATATTC 98791 32 100.0 32 ................................ TTCATGCCGGAAGCATTCAAAACATTTTTCAA 98855 32 100.0 36 ................................ CCTGGATGGTACATGAATGGACGTTAAGGCCGGATC 98923 32 100.0 36 ................................ GGAAGGGATTTCGGTCATGATCGGGATCGCGACGAG 98991 32 100.0 34 ................................ CTCCTGATTTCCGGACCAACTCAACAATACGGAG 99057 32 100.0 35 ................................ TTCTTCGGCCTTGATGGCATGTTGTACATGCTATT 99124 32 100.0 35 ................................ ATCGGGTCGGGGATCGAAAACGGCTTCGAACCCGA 99191 32 100.0 33 ................................ CCAGTTGAGTCATAAAAAGATATGATCGGCCCA 99256 32 100.0 34 ................................ GTCACTGTTCAGGATCGTTGCGTCCGACTTGGGC 99322 32 100.0 37 ................................ GTACATGACCAAGGCGAGAAACTGGACGGAACACCGC 99391 32 100.0 36 ................................ AGCTCCACCTTTGCCATGTCATATCCTTGATCTTGC 99459 32 100.0 36 ................................ GCTCTAATCTGATCAACCAGGTACATGTTAGCCTGT 99527 32 100.0 33 ................................ ATTCTAAAGGAATACAACGGCAAACAGGACAAA 99592 32 100.0 34 ................................ CTGATGCTTTTTATATGCGATCACACCTGCTGTA 99658 32 100.0 34 ................................ CACAGCGGAAGAAGGGAAAAACGGCATGATAAGC 99724 32 100.0 35 ................................ TATCCCGACACAATGCCACCGCGCTTTCGGGATGC 99791 32 100.0 35 ................................ CTCCTGAAAAAAATAAATCACTTGCATTACATTAT 99858 32 100.0 36 ................................ ACCAACCTGCTGAACAAGCCCCTTTAGATGCTTATC 99926 32 100.0 36 ................................ AAATAGACGACGGCAACTTTACTCGTATAGCTAATG 99994 32 100.0 35 ................................ GATGGTCCATAAGGACCTTTAGCGGAGACAGTGAT 100061 32 96.9 35 .........T...................... TGCTAGGAATTCAAAATCAAGTATCAATAATCCAC 100128 32 100.0 34 ................................ CTTCGGGGAGTATGCCAGCCCGTCATTTGATTCC 100194 32 100.0 36 ................................ TTCGATTTTACCTATCCGGATCCGATGACCGGTCAA 100262 32 100.0 37 ................................ GCCTCGTAGTCCATATAGTAGATCGGATCAACAACGA 100331 32 100.0 35 ................................ CATGAAGGTCGAATTATTAAACTATCGTCTGAAAC 100398 32 100.0 36 ................................ GAGATAAGTTTGTAGATAATGAGGGAAACGTCATTG 100466 32 100.0 37 ................................ AGATGGTTGCACGACAGGCTTAGTCTTTAGAAATTCC 100535 32 100.0 35 ................................ ACCTGAAAAACAATTACGGTTGGATTGATAAGCAG 100602 32 100.0 35 ................................ GTTGGAACTGGAATTGGAAGACGTTAAATCAAAGC 100669 32 100.0 33 ................................ AGAAGCGTTACGGTCTATTACAGTGGGATTGTG 100734 32 100.0 34 ................................ ACAACGCACAATGGCTAAATTTCTTCGTGAACCA 100800 32 100.0 34 ................................ CACGACTGAAATCCTGCATAGCCAATCCTAAAGC 100866 32 100.0 33 ................................ GGAAGCACATACGGAACGCGAACGATTGATATG 100931 32 100.0 35 ................................ ACTTGACGCTAGTTAGGCGCCAGTGGCTGCGACCG 100998 32 100.0 35 ................................ AAACAGCCTGCCGTCAAGCAACCCATGGACTCGTT 101065 32 100.0 36 ................................ GATCAAATGGCGCAGGCAGCGTTCGCAGAAGGTCAC 101133 32 90.6 0 .....................C..T......C | A [101154] ========== ====== ====== ====== ================================ ===================================== ================== 49 32 99.7 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CTTGCAGATGGAGTGACGAATACGTACAAACCGACCAAGGCGCTAAGGAAACGAAAGACGATACCAACGACAACGAAATGAAAGACTGCATGCCAGACGGAATTTGGAATTACCTGCAACTACTGGGGATGAACCTGGAACGCAGATTGCGCGATCTTTTTTGTTCATTTTTTACTTTCGTGTTCAGCCCAACTACCCTGAAGTTCTACTAAAAATTTCGTCAAGCAAGCCCTAATTTAGGAGATAAGTACAAGACAATAGTTGAACACATTGGCGTAAAATCTCCCTATGACATGGAAAGACCGCTGATTCCTTTAGAGTGCGGATCCCAAGCTCCCATGATATCTCCGGATCCTTCGCACCTCGAATTTTGTCGAAATTGGATTTTTTTATCATGCATCAGAAAAAGTCAATGATTGATTCATGCCTTTTTTGCAAGATTTATAGCGAGAAGATGCCAAATTAATACCAATACTGGATTAATCGGGCGCATTTTCGCC # Right flank : CTCGCTAATATCAGGAACCATCTTCCCTCTTTACCCCCTTGATTGTTGTCTTTAGCCGTTTACTTTGTAGGAGTGAGGGGCCAATTCCCATGCCCACTGTCTAGTTCAAGTGGCCTCGCCTCCTGTGGCTGGTATCGATTCGAAGGTTTCTTTACCTCCTCTTCCATTCGTCTTAAATATCCCTAACGAATTCGGATTTTTTTAGTTTTCTACATGGTCACGCTACTGCTTATCTTGCTTGAACTTGTAACCCCCAATAAAATGATTCAGGCGCGTGGAGCCTGAGACATCATTTTCATTTTAACAGCTGCCTGAGGATACGATGTCTGCACTTGACTGCCAACATTTACATCGGAAGCCGTGTCTGCTAGAATTCAATTGTTAACCGCATTCAATAAAATTGGTTAACAATTAGGACCGCCCCATTAAGGAAGGAGATTATCTTTTGATGAACATGTACCCTGAGACTGGAACCTCAACCTGGGATTGGCAGGCGATCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //