Array 1 7282-6977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030362.1 Salinibacter ruber strain SP73 plasmid pSR16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 7281 30 100.0 39 .............................. CAGTCTACGACCAACACGGAGGCCCAGACCCTGCGTCAG 7212 30 100.0 41 .............................. GCAGCCGCCACGGAGATATACACCCACTCCGGCGGGGTCGG 7141 30 100.0 39 .............................. TCGTGTCGAGCTTCTGCGTGTAGTCGCTGTAGACGGCGT 7072 30 100.0 36 .............................. CAGCCGCACGCGATCCGTCTTCAGCAGACCGCCCGC 7006 30 83.3 0 .........................CCTCT | ========== ====== ====== ====== ============================== ========================================= ================== 5 30 96.7 39 CTTCGAATCGGACCCTTGGGGTATTGAAAG # Left flank : GGCGGGCCCTCGACCGCGCGCTTCGCAAGAAACGCTCTTTGCGAAGGTACATTGAAAGGAGCGACTGAACACTCATGTGGCCTTCTTTAACCGAGGCGAGCGTCGAGCTAGTACCGGCATCACGCCAAATAGGGCGACCGAGAGGAAGGCCGAACACAGATGCGCTTGTCTTTTTCTTTCACGGGCCACGACCGGCACCTGTCTGGACCTAACACCTCCGGCGTTGCGAGCGTGAGGAGTCTGTGCGGGAGTACAGACGTTTCCACTTAGTCAGTGGCTACGGTGGGCAGGCCCAGGTCGAAACTCCAAGCGCGCCGGTTTAAAGACGCTTCGCGTGATCCCGGCGCGAGACTGGTCGTTTTTATCGTCACCCTTCGGTTCCGAACGAGCCGAGGGGGGCTGACGACACTCAGACATGCAAATGCGTAGCTACAGGCCGATTCGGGCACGTAAGAAAGCAAAAGCTGGCCCCAAAGCGGCGATTGCAGCGGTCTGATAGC # Right flank : ATTCTGATTCGATCCGCTCGACGTACCGATCCACAGTGGACCAAGCCAGGTCGGTTCGGCGGCTCATTTCTGCCTTCGATGCGCCCTCTTCGAGCAACTCCTCAATCTGACCCCTGTGCTGGTCGAACTTTGAGGGGCGTCCAATCTGCTTCCCTTCTTCGCGGGCCCGCTCGATTCCGGCCTTTGTGCGACGGCTTATCTTCTTAGCCTCGTATTCAGCGAAGTAGCTCATCACGGCGAGCAGGATGTGGCTCACAAGCTCGTCGTCTGTATTCAGGTAGGGCTCGGTGTAGGACCGGAAGCCCACCGATAAGGAATCGAGTTGCTGAAGGTACGCAATCGTCTTCCGGATCCCTTCGCGGCTGAAGCGGTCGAGGCTCCAAAACACCAGCGTATCAAACTCCCGGTTCTCGGCCGCCTCAAACATCTGGTCGAACGCCTCACGCTCGTTCCGCCCTTTCCGGCCGCTCTCGTGATCGACGTACTCGCCTACAAGCTCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGAATCGGACCCTTGGGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 59473-57430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030363.1 Salinibacter ruber strain SP73 plasmid pSR118, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59472 29 100.0 33 ............................. GTCTACAACGACCTGCAAGCCGACAGGGTAGTA 59410 29 100.0 32 ............................. TACGGAGATTTGTTGTATCAAGGTGTCCGAGA 59349 29 100.0 32 ............................. GTCCTTCGCGTGCCGGATGAAGGTCTCTCCGC 59288 29 100.0 32 ............................. CGTCTCGCTGCGGATCTCCGTGCCGGGTCGGT 59227 29 100.0 32 ............................. TTCCTGACGTTCCCCGCCCAGTACATCGCGCC 59166 29 96.6 32 ............................T CAGCGTTTCATTTTCAGACGCATCCGTCGTGA 59105 29 100.0 32 ............................. GGTAGAGCCATGCCGCCTACGCAAGACAGCCG 59044 29 100.0 32 ............................. TCGCCGGGGTCGGCCGCAATGGTGCGGAGGGA 58983 29 100.0 32 ............................. TAGGTCACTCAGAGCTCTAGAGTTGATTGAAG 58922 29 100.0 32 ............................. CCTCAATCGGGGGAATTCATGGAGACGGATTT 58861 29 100.0 32 ............................. GCGAATGCAGGGGGCGGCACGAACGCGACCGA 58800 29 100.0 32 ............................. CGACTCACAGATCCACGTCCCCGTGTGGGCAA 58739 29 100.0 32 ............................. TAGCTGGCGACCTTCCGGGCGCATACGAATAT 58678 29 100.0 32 ............................. AAGGAAAGCCGCGCCCTCACCCGAGCGATCCC 58617 29 100.0 32 ............................. CTGCCTATGCCTAGCTGGACCGACATCCTCCC 58556 29 100.0 32 ............................. TCTGTATCTAGTAACTCATCCGGCAAACGCTC 58495 29 100.0 32 ............................. AAGCAGCGGGGCTTCTTCTGGGCGAAGCACGC 58434 29 100.0 32 ............................. TTCCCGCTCGCCCTCGATGACAGCTACGAAAA 58373 29 100.0 32 ............................. TTTAGCCAGTCGACCGCAGCGATGGCGCTCCA 58312 29 96.6 32 ............................T TTCCCGTCCTGATTGACGGCGCTTTCCACGTC 58251 29 100.0 32 ............................. TTTGCTGCTGATTTTTTCATGGCAACGGTAGA 58190 29 100.0 32 ............................. GCAATCCGTAGCATACGAAGATCGCTCCGTAT 58129 29 100.0 32 ............................. GCCTCTCGTGTCTCTTCAAACAGCCGCTTCCA 58068 29 100.0 32 ............................. CCATGCCGTTCGGGTAGGCGGCGGCCGTAGCA 58007 29 100.0 32 ............................. ATGCACCCGCATATATATACTGGCCAGTGCAT 57946 29 100.0 32 ............................. GCCACGCTGCGCTACGCCGATGATCCGGGCCT 57885 29 100.0 32 ............................. TCGATCACCGGGTACTCGCCTTCGGAATACTC 57824 29 100.0 32 ............................. TTTACCGACGACGGTACGTACGACACGATCTT 57763 29 100.0 32 ............................. ATCCAGAGTACGGGCGCAGGGCGTCAGCCGGG 57702 29 100.0 32 ............................. CATGTAGACGGTTACGTCTTCATCTTGCCCGA 57641 29 100.0 32 ............................. CGCTGCTGGATTTCGAGCTTCGCTTGCTGTTT 57580 29 100.0 32 ............................. TTCGCCGGCGATGGCGTGGAGTCGGTATCACC 57519 29 100.0 32 ............................. TTTCCAGCCGCATATGCGGCACCTGCGTTGGC 57458 29 86.2 0 C............G.......G......A | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GGTAGCCCCGTACACACGGGGATAGACCC # Left flank : TGGCTTACCCACCGCGACCTCACCGAAGCACACGACACCGAAGAGCTGCTCAAGCAAGCCGAGGTCGAAGAACAGCCCATCGGTGAAGAAGACCCTACCGTGCTTCCTACCGGAAGCGCAGAAGGCCTCCTGTAACTGGCCTCCCGTAGCTGGCCTCCCGTAGCTGGCCTCCTGTGACTGGCCTCCTGTAACTGATGCCCGCTGCTGCGGCTTAGCCGCGGGAGCGCGACCTGCTACAGAGAACGAACCTGCTACAGGGAGCGCGACCCCTTGCAGGGAGCGCAGTCTACTGCAGGAAGGTCTCTCCGGGAAGGTCGCTCCGGGCATGTTCTCTCATGTTCTTTGACGTTTCCATTCTTCCAAACTACTATTTTAAGTAACGGTGGGCGAGCACGTAGCGCGCCGCAGCCCAACCTTTCCTGCGACAAAGTGACGCAGAAGAAGGGTAGAAGGAAGGAAAACGCTCCTTCCATGCCGGAGCGGTGACACTTTGTAGCAGG # Right flank : TTCCGTGAGGGCGGCCATTACTCAAAAGAAGAAAGCAGAAACGGCGACTCATTCCTGTTCAGCCTCCTTCAGCTTCAGCCCGAACCCTCCCGGCACGATCTCGCCCTCTTCAATCAACTGCTCGACTTCCCCTTCGACCAAGGCCTTCAGATTCTTCCCAGCTCGATTGAATCCAAGAAGCCGGACAGCCTCCCTCGGAATCTCATCTTCCAGAAGCGGAGCCCGGTGTCTCAAGAGAAGCCGTACTGCCTCTCTAACTTCGGCCGGCGGGATTTTATCAGTGTCGAACGAGCGGTCGGGAAGGTCCCGAGATCGGACTGGAGGCGTGTCCATTCCAGGCTTCCAAAGGTAATCTCCTCTTCGGTCGACCTTGCCGCGGGACTCCAGCGCTGAGATGGCTTCGGACATTCGGCCTTTGATTCTGCTTCCGAGCTGGGAGAAGCCCCACTTTCCCATTGCGCGCCGCGCCGCATCTTCGACGTGGACGGGCGACTCCTTCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGCCCCGTACACACGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 74880-70963 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030363.1 Salinibacter ruber strain SP73 plasmid pSR118, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74879 29 100.0 32 ............................. ACTACACCGCCTACGGGCTGATAGAGGCGATC 74818 29 100.0 32 ............................. TGGGAGGGCCTCTCCTCATTTTTCGCGGAGCT 74757 29 100.0 32 ............................. TACATTGGACACCGTGCCCACGACCTCCGTGA 74696 29 100.0 32 ............................. GTGATTGCCGCTCGGACGGGCCACGGGAAGTC 74635 29 100.0 32 ............................. ACGTTTCGTGATACCTCAAAGACAAAGAGGTA 74574 29 100.0 32 ............................. TCTCGTCTTCCGCTCAAACCTGACTTCGCCCT 74513 29 100.0 32 ............................. TCGCCGCCGAGCTCTTGCCGCCTGAACTTCTC 74452 29 100.0 32 ............................. GCGAAGCGGCAAGAAGAAAGCCGAACGTCTTG 74391 29 100.0 32 ............................. TGCTGGGCTGAAAGGCCACGGACCTGTTCTTC 74330 29 96.6 32 ............................T CACGTCCCATATGCTTATGAACACCTTAGCAG 74269 29 100.0 32 ............................. ACGACAAAGCGAGAGAGTGCGTGTGGTGCCAG 74208 29 100.0 32 ............................. AAACAGAACAAGCGTACGTGCTTCGGGGCCAC 74147 29 100.0 32 ............................. TGTTCTGCGTTCATGTGCGTAGATAGGTCCCG 74086 29 100.0 32 ............................. GATCCCCTCCAATACCTGTCCACCCTGTTTCA 74025 29 100.0 32 ............................. TGTAATGGCTTCGATCAGCTTCCAAGACCAAA 73964 29 100.0 32 ............................. GATTAAGTTAGAGGTCGGGTGCCCGAACGGGA 73903 29 100.0 32 ............................. TCGGAAGGCTCCATCTGCTAAGGCATCTATTC 73842 29 96.6 32 ............................G GGAATAAGGCGATATGGATTCGTCGCAATTAG 73781 29 100.0 32 ............................. GGAAGGGGAATCGCTTTGAACGCGAGGTTGTC 73720 29 100.0 32 ............................. AGTTCCAACAGCATCGAGGCTGAGGTCGTGCA 73659 29 100.0 32 ............................. TTCACCGGGTTCGCCCCCGAGGACGTGACAAT 73598 29 100.0 31 ............................. CCACCGGGTTCGCCCCCGAGGACGTGACAAT 73538 29 100.0 32 ............................. CAGCGCGTTGAGTTCTTGCGGAAGCGGCTCAA 73477 29 100.0 32 ............................. CCCCTGTTCGGATACTCCCTCACTAAGTTCGG 73416 29 96.6 33 ............................T ATCAGCAGGTGGAAATGGGGATATCCCCTTTCG 73354 29 100.0 32 ............................. CACTACCTCCGGTACAGCGGGAAGATTGAGCA 73293 29 100.0 32 ............................. CATACCTCCTCCCTCCGCAAGTTTGAAAGGTT 73232 29 100.0 32 ............................. TCCCCTACATTTGCAGAGATGGTCTCATCGTT 73171 29 100.0 16 ............................. CGCCCGCTTCCGAAAC Deletion [73127] 73126 29 100.0 32 ............................. CGTATGCAGCTAATCAGTAGCGGGGCAATTTT 73065 29 100.0 32 ............................. TGGTACATCTCCTGCGCATCCTCCAAAAGTTT 73004 29 100.0 32 ............................. TGTTCATTGCGCCGAATGAGTTTGAGACCGCT 72943 29 96.6 32 ............................T CTCTTATCTCTTTACCTTGACACCAGCCCCGG 72882 29 100.0 32 ............................. GACAGTCGACACAAATTTCGAGAAGCTATCGG 72821 29 100.0 32 ............................. GCTTGTGGCCTTTGATGAATGCTGGGCCATCA 72760 29 100.0 32 ............................. CGGCCGGTTGGGGAACGGACCACCTTGGCGAA 72699 29 100.0 32 ............................. TGGAAGCCCTCTGCATACGCCCCCTCATCGAC 72638 29 100.0 32 ............................. CTCAACGCCGGGGACGGTGCAGCTATCCCGGC 72577 29 100.0 32 ............................. CGGAGCCCGGAAAGGAGGCGCACCACGTAGAC 72516 29 100.0 32 ............................. ATCGATGCGTTTGAGGCCGTCCGAGGCGCTCT 72455 29 100.0 32 ............................. GCGCCGTACCGTTTGCCGCCCCGCGAAATGGC 72394 29 100.0 32 ............................. GTCGAAGCACTTGAAGAGGCCCTACCGCCGCA 72333 29 100.0 32 ............................. GGATTCGAGTTTGCCTTCCGTCGCGGGGTCAA 72272 29 100.0 32 ............................. GTCCCGTTCTCCGGACAACCGGAGCGGGTCGA 72211 29 100.0 32 ............................. GCCTCCAGGCACGCCGGGGCCGAAATGCCGAT 72150 29 100.0 32 ............................. TCGCGAGGAACCCTCCTCGCGGGGCGTGTTCT 72089 29 100.0 32 ............................. TGGAGCTCCAGGTCTTTGTCCAGGGCCCCGTC 72028 29 100.0 32 ............................. GCGCTCATTTCGACAGTAAACGACGGGCTGGA 71967 29 100.0 32 ............................. TCCACGGACCGGGCCAAAGTCGAGGTGCTCTC 71906 29 100.0 32 ............................. TGCCTCTGAATTGCACTTGCCGCCACCTCTGG 71845 29 100.0 32 ............................. CTAAGCGCCAAACCCAGCGGCCTCCTCTCGAC 71784 29 100.0 32 ............................. GTCGGCCCACTCGATTGGAAAAGGGTAAGAGG 71723 29 96.6 32 ............................T CATATTTTCCACCTGCTGGCAACGGGAAGCGA 71662 29 96.6 32 ............................T CATATTTTCCACCTGCTGGCAACGGGAAGCGA 71601 29 100.0 32 ............................. AAGAATACATCCGGCGACAGACCGACGCGAAG 71540 29 100.0 32 ............................. GAATTGGCGTCTGCACATTCCGGCTCTTGACG 71479 29 100.0 32 ............................. CGAGACGTAGACCACATGCTGACGATCCTCGA 71418 29 100.0 32 ............................. CGCTTTATCGACGAGACCGCCGACCAAATGCT 71357 29 96.6 32 ............................T TCGGCCTCAAGGACGTGGCGAAGACCCTTGGC 71296 29 100.0 32 ............................. TGCGGATCGACGTTCGGAGGGCATTTACGTCG 71235 29 100.0 32 ............................. CGCCGTCTTACCAAGCAGGAGATTGACAGCAT 71174 29 100.0 32 ............................. CAAAGAGTACGCCCAGGAGCAAGGGGACCTGC 71113 29 100.0 32 ............................. TGGACGATCTCTTCGCCCGTCACGACTGGCGA 71052 29 100.0 32 ............................. CGGTCCCGCGTCTCCGAGTCCATCGGCCGGGT 70991 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.6 32 GGTAACTCCGCACACGCGGAGATAGACCC # Left flank : CTGGTCGTAGGAGTAGTTCCCCTCTCTCAAGACCCGAGCCACCTTACGGATGTCTTCCTGGCGGTCGTGATCCGGGCCTGGAGTTGGAGAAGAGCGGTCACTTTCGGGCATATCGGGGCCGATGGGCTGATTTCACAAGTTTCGCCTTCGATGTCTTGGCACGAAAGACTACCGCCTCCGCCCCTGAAAGTCAACATTTGAGGTCGATTTTCTCCCGCTGAAGGCGACTCGGTTTCGCTCTACGGGCATTACACGAAGCCGTCAAAAGGCGAAACCGTGAGAACGGTCTTGTGGTGAGGGCAGTGTGGCGCGCGGCCAAGGCTTCAAATGCGATCCCCTGTCTTCGTTGCCTTCTCGTCTGCATGTCTTGCTTGTCTGCATGTCTTGAGCGAGGCGCCAAGCACGTCTCTAGAGGATGTTCTGTCAAAATGGCTCATTCATCTCCCTCATGGACGGTCATTTGCATTTCTCCCAGTCCGTTTGCGACATATTGTAGCAGG # Right flank : GCGGTTTGATTGTGAGCGGCGACCTGCTAGAATCAGGGGGACTCGGTGCATGGAGATTCAAAGTATCGAATCCCGAGAATGGTCAAGTTCCGAGAATGTATGATGGTGCGTGTCCGTACAAGTCTGCCATGCCCGCTTCTGTCGGACTCTGCTCTCACCCTTCCCCATGACGTGGACGGACCGTCCTCTCCGTACAGCTCCACTGGTGTTTTTTGACCTGGAAACAACGGCGTTGCGCCCCGATCGCGGCGGGCGAATCTGCGAGATGGCCGTGGTCGATCAGAATGGAATTCGGTTCGACTGGTGCAGCGATGCGGCCTCGCCCCGGGATGACGCTGTTTCCTGTCAGCTGCCAACGCTTGTTGGTCATCTCGAATCAGGAATCGTGGTAGGACACAATCTGCAGTTCGATGTTCGTTTTCTCACACACGAGGCCGGGCGCCTGGGGCTCAGCGGACTCGACCTCCGCTTCACCGACACGTTGGGCCTGGCCCGCTCCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAACTCCGCACACGCGGAGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //