Array 1 22475-23829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKV010000018.1 Neisseria meningitidis strain 107060 NODE_18_length_41835_cov_40.316988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22475 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22541 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22607 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22673 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22739 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 22805 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 22871 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 22937 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23003 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23069 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23135 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23201 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23267 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23333 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23399 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23464 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23530 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23596 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23662 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23728 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23794 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //