Array 1 90624-89009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUCK01000023.1 Escherichia coli strain CVM N36401PS N36401PS_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90623 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 90562 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 90501 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 90440 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 90379 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 90318 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 90257 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 90196 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 90135 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 90074 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 90013 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 89952 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 89891 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 89830 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 89769 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 89708 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 89647 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 89586 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 89525 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 89464 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 89403 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 89342 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 89281 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 89220 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 89159 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89098 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89037 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117117-116173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUCK01000023.1 Escherichia coli strain CVM N36401PS N36401PS_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 117116 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 117055 29 100.0 32 ............................. CACAATTATTCGGTACGACGGGTTCAGGCATT 116994 29 100.0 32 ............................. GACCAGAGATGTCGTAGCCGTATTTCGCAGCC 116933 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 116872 29 100.0 32 ............................. AATGCAGGGCTGGGATCGGGAAAAACAATTTA 116811 29 100.0 32 ............................. CTCATCAACCAGAATACGACCCGCCTTTTTGC 116750 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 116689 29 100.0 32 ............................. AGGAGTTTAATTTCCAGATTGAGCGCTGGATA 116628 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 116567 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 116506 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 116445 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 116384 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 116323 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 116262 29 96.6 32 ...C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 116201 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTTAGCGCTTATGGGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 127092-127668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUCK01000027.1 Escherichia coli strain CVM N36401PS N36401PS_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127092 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 127153 29 100.0 32 ............................. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 127214 29 100.0 32 ............................. CTGACCGGATTTATTAACCCCGTCAACCGTAC 127275 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 127336 29 100.0 32 ............................. GGCGGCATTACTGCTGCGAGTATAACTACGAT 127397 29 100.0 32 ............................. CCGCCTGATGGCGACGCGTCTTTTAACCCCAT 127458 29 100.0 32 ............................. TTCGTGATTCAGGATCTGGCGATTTATCAAAA 127519 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 127580 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 127641 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //