Array 1 242805-241018 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUO010000039.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FW-S1-Jan NODE_124_length_731874_cov_90.446571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242804 29 100.0 32 ............................. TCGAAGCTGATTTTCAAGATGCGCGTAACGGT 242743 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 242682 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 242620 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 242559 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 242498 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242437 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242370 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242309 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242248 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242187 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242126 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242065 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242004 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 241943 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 241882 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 241821 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241760 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241699 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241596 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241535 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241474 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241413 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241352 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241291 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241230 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241169 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241108 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241047 29 96.6 0 A............................ | A [241020] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260922-259063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUO010000039.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FW-S1-Jan NODE_124_length_731874_cov_90.446571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260921 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260860 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260799 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 260738 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260677 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260616 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260555 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260494 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260433 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260372 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260311 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260250 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260189 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260128 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260067 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260006 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259945 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259884 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259823 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259762 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259701 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259640 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259578 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259517 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259456 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259395 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259334 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259273 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259212 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259151 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259090 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //