Array 1 365857-365588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIC01000001.1 Xanthomonas albilineans strain HVO082 Xal-HVO_082-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 365856 28 96.4 32 A........................... AAAAAGGATCACCTTCCGCAGGGTCGGGCGAC 365796 28 100.0 32 ............................ ACTACGTTCACGCGATCCTTGAAGGCGCGCTC 365736 28 100.0 32 ............................ TTACCGACATTGGCAGCTTCTCGCGCGAGAAA 365676 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 365616 28 96.4 0 .........................C.. | T [365592] ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGATCGCATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGGTTGCGGGAAGCTAGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGACGTGGCAGAAACTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCGTCAGGGGCGCGAAGGTGCTTGATGCAAGACAATTTGGACATATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : TGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCTCCCTCAATTTTTCTCGCGTGCAAAATGAAACAGGGGGGGGTCCCCCCTGCAAGGAATCAACATGGCCGGACGCAAGCGTCTTCCCACCACCGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGCCGCACCAATCTAGGCGAACCCAAGCCACAAGGTGATCTGACAGAGCCACCCGACTATATGAGCGAGGGTGCAAAGTCAGCCTGGCGCTACGCGCTGGAATGCGCGCCACCACATCTGCTCAAGCGCCTGGACATGTCGGTGCTGGAAGTGTGGGCCTGCGCCGCTGATCTGTATCGCAAGGCACAGACCGGCATCAACAAGAGCGGATTGCTATTGAAGGCACCTAACACCGGTGTGCCGATGCAGTCACCGTATCTGTCCATCGCCAACAAGCAGGCGCAGATCATGACCAAGGCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3215746-3216507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIC01000001.1 Xanthomonas albilineans strain HVO082 Xal-HVO_082-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3215746 31 100.0 35 ............................... ATTCGGAGCTGTGCGACCGCATCCAGGATGTTGGA 3215812 31 100.0 37 ............................... TTCGTAGAGACCGCGCAGGAACGGATCGAGTTGCAGG 3215880 31 100.0 35 ............................... ATGAAACCGGCGGTGGACTGATGCGCTCGAAGAAG 3215946 31 100.0 36 ............................... TTCGCAAACGATGTCGCCCTGCCTGCGCTCAAGGGG 3216013 31 100.0 35 ............................... TTGGTCATGCGGCGCTCCGCTGCTGCATGGAAAGC 3216079 31 100.0 35 ............................... AAGCCATAACGCGCTGCTGCATTATGTGGGGGGAG 3216145 31 100.0 35 ............................... CCCCGCGCCCAACACAGCAGCCTGCCGCGCAGGCA 3216211 31 96.8 36 ...................A........... TGCTGCTCTGTTGTCGCCTGGTTCGCCCGCTCCAGG 3216278 31 100.0 35 ............................... ATGCTTCGGTACACGCTGGAAGACCGCGAATGGCT 3216344 31 96.8 37 ....................C.......... CATCGGCTCACAGCACACGCCGGCCTCGCGCTGCACC 3216412 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3216477 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ===================================== ================== 12 31 98.7 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3405819-3407348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIC01000001.1 Xanthomonas albilineans strain HVO082 Xal-HVO_082-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3405819 28 100.0 32 ............................ ACGGAAAAGTCGAAGGAAGAACAGGGAACGCT 3405879 28 100.0 32 ............................ TTCACGCGCGCAAAGCAGCTAAGTCAAGACTG 3405939 28 100.0 32 ............................ TTCAGGCGGCGCTGGCGCGTACATCGACGTGT 3405999 28 100.0 32 ............................ GTTGCCGGCGTCCCGCAGCCCGGGCATGTCGT 3406059 28 100.0 32 ............................ TTGCCCAAACAAGGAATGAGGATTGGAAAACC 3406119 28 100.0 32 ............................ TGCAGTGGGTAGGCATCCGGGCCGAGGAAAGC 3406179 28 100.0 32 ............................ GAACGGCTCGCCGCGGTGCGACCAACTGTTGA 3406239 28 100.0 32 ............................ ATGTCCATCTTTGCGTCACGCAGTTGAGATAC 3406299 28 100.0 32 ............................ ACAGCGAAGGCGGTGCTGATATCGCTTGCCGA 3406359 28 100.0 32 ............................ TGATCCCATTCGCTATCGACTCAGCCATGCGA 3406419 28 100.0 32 ............................ AATTCCAAGGCCAAGACTTCTGCGCGATAGAT 3406479 28 100.0 32 ............................ TTTGACCAAGATTGCATTGCTCGCCGCTACGC 3406539 28 100.0 32 ............................ ACGAGGCACAGCAGCGCGGCTGACTTACTCAG 3406599 28 100.0 32 ............................ AGTTCCAGCGCAAAATTCACCGCGCCCGCCGC 3406659 28 100.0 32 ............................ TGAGGAAAAGCCATGAGCGACAACGTCGTCCG 3406719 28 100.0 32 ............................ AGCCAGCGAGGTATTGCTCCCACGCTGCTTGC 3406779 28 100.0 32 ............................ TGTCATCCCCTCAGTTCATATTAGTTGGTGGC 3406839 28 100.0 32 ............................ CCTCGATGCGGTGCCGGAGTCTGCATTGGATG 3406899 28 100.0 32 ............................ ACGCCCCGGCTCGTCGCGGGTATCCCTCGCGA 3406959 28 96.4 32 ............T............... GCGAATTACCACTCGCGCACGCCGCAGTACAA 3407019 28 100.0 32 ............................ TCCAGGCGGAACTCATCGCGGTCAATACGGCC 3407079 28 96.4 33 ...........................G TGGCGCAATCTCCTTCTTTTCCAGCGCATACAC 3407140 28 100.0 32 ............................ AATGCACGCCGTCCTCTGTTTCACGTAGATGA 3407200 28 100.0 33 ............................ ACGACTGCCCGGCATCATGTGCTCGAGCTTGTT 3407261 28 96.4 32 ............A............... TGTTGGCCGCTCGATAGCCACTGCGGAATGGC 3407321 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCCGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGACCCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCTGCCGCTTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAGTAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //