Array 1 525421-522412 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP011952.1 Methanothermobacter sp. CaT2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 525420 30 100.0 35 .............................. CATAATGCACTTCCTCATTCTCTATCGCTGTGAGG 525355 30 100.0 31 .............................. CTAAGAACACCAAAGGAAAACACCACTGAGG 525294 30 100.0 43 .............................. TTGGCTGCGGAGTTCCGGTACCGGGCGGGTGACCGGCTGGCCA 525221 30 100.0 32 .............................. ATCGTAGTGAAACACAGCAAAGAACTAAAACA 525159 30 100.0 34 .............................. GTTAGTGGTCACTCTCCCAATGCATATAACATAA 525095 30 100.0 36 .............................. ATTCTTGTAGAGTCTGTGAACAGTCCTGGTGACCTT 525029 30 100.0 37 .............................. GGTGGAAGTCAAATGGAAGTCAAATGGAAGTCACCAG 524962 30 100.0 34 .............................. AATTCATATCTATCCTCTTCCTCACACTCCCAAA 524898 30 100.0 33 .............................. ATGTTGAAAATTTTGGGCTGAAAATCACGTGTA 524835 30 100.0 43 .............................. TTGTCACGACTTTAACCTGTTCTGTTGATAAACAGATGAATGC 524762 30 100.0 37 .............................. GAGCTCTCCTACGTGGTCCATGGCCTCATCGAAGGAG 524695 30 100.0 35 .............................. ACAACAGTAGGGAGCCTGGAAGCCTGATGACCGGA 524630 30 100.0 38 .............................. TCTGTCTCACCTCTTTTTTGTTAGGGGTTCAGGTGTTT 524562 30 100.0 37 .............................. ATTAGTGGCAGCCCGATTAACTCTCTGATAATCATAT 524495 30 100.0 32 .............................. TGATGGCGCGGGGGTGGCTGAGCTCGGGGTAG 524433 30 100.0 34 .............................. TGGGGAGAGGGGTGATGATGAGCAGGCGACGCAG 524369 30 100.0 37 .............................. CCTCACCGACCCCTTGAGGCGGGTGATCTTATTCTCA 524302 30 100.0 36 .............................. AAGGAAGACATTAGGGAAGTTATCGACAGAGTGATT 524236 30 100.0 39 .............................. AGAAAAAAAGAAACGAGAACGAGAAAAAAAAAGAAAAGA 524167 30 100.0 35 .............................. CGATGTGGGCGAGGTAATGGTCGTATGCCTCCCTG 524102 30 100.0 37 .............................. GCAAGAACAAGGAGTGTCAGGAGCGCTGCAAGCACGA 524035 30 100.0 36 .............................. TGTACTTGACGGCGGCTGCGGCTTTGCGGAGTTCTC 523969 30 100.0 37 .............................. TGTGAAGTCGTAGAGATCGAATGGTGGGTCTGTGAAG 523902 30 100.0 34 .............................. TAAAGTCTGCAAAAGATGTGGGCGCCCTATACGG 523838 30 100.0 36 .............................. GGGACACAGTGATCGATGAGAACATCGGGGCCACCT 523772 30 100.0 32 .............................. GGTAGACGAGCGGGGTCTCGTCAGGGTTCAGG 523710 30 100.0 36 .............................. TTCCCTTCCAGGACTTGCGGACGTTCCCCACCTCCC 523644 30 100.0 42 .............................. ATACATGGGACTCACTCCCAACCTTCAATTTCATCACAGAGA 523572 30 100.0 36 .............................. TGAAGTATTTGAATTCAATTTTTAGTTTTCTGTTTG 523506 30 100.0 37 .............................. TGTCAGCGTAGACTTTCCCTGGTGCTCCGTCCAGGAA 523439 30 100.0 37 .............................. TGTCAGCGTAGACTTTCCCTGGTGCTCCGTCCAGGAA 523372 30 100.0 34 .............................. GTCAATAAAGAAAAAGGATTCTATAGAGTCGATA 523308 30 100.0 37 .............................. GTGAAGCTGGCCACAGTCCTGAAATGGTGCATCATAG 523241 30 100.0 37 .............................. GAATGAGAAAGAAATGAGAGGATCACTCCTCCCTCCT 523174 30 100.0 34 .............................. CAGTGTCAGTCACCAAGATCCTCGAAAGAAAAGT 523110 30 100.0 36 .............................. TGAACAGTACGTGGAGGAAGGGGATATTATTCTCGA 523044 30 100.0 36 .............................. GAGCGTATAGGAGGGAAATAAGGAATGGTGTACCAT 522978 30 100.0 28 .............................. TCGCGGGTGGAGAAGAACCAGGCAGGGT Deletion [522921] 522920 30 96.7 35 .............A................ TGACAAAACACGTGTTCAAAGTAGAGGAGGGCCGG 522855 30 100.0 36 .............................. ACTACAAGGGACAGGAAAGTTTTATATCCCTGATGT 522789 30 100.0 38 .............................. GATCATATCTTTTGTAGTGATTTTTTCCTTCTTCTATA 522721 30 100.0 49 .............................. GCTGGTCGGTAGCTTAATGCGTATTTATATAACTCTATTTCGTATCTGT 522642 30 100.0 36 .............................. ATCTGATACATTTCATTAGCGATTTTAATGTATTCT 522576 30 100.0 38 .............................. TATGGCCAAGACACCAATCAATCATGAGTTTATCCATA 522508 30 100.0 37 .............................. TCTTCCACTACGTTGACGAGTTGGTCGGTTAGTGCGG 522441 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================= ================== 46 30 99.9 36 GTTAAAATCAGACCAAAATGGGATTGAAAT # Left flank : GGGACTCATCCATGGACCTTCAATTTAAATTCATCAGGTTCGCTCAAAAAACAAATTTAAAAGCTTATTATGTTGAATAACATGACCAGTTTACTAATAAACAATATAAAAGGTACATAGACTAATTTTTAATATTCTATCACACTAAAAAATCTTAAAATTCAATTTAAGTTCATTAAATAATTTATAGGCTCAACCGGAGCCCTCTGGTAGAGTCGTTTATGAGCCATTTTTCAGCCTCTTATTATAATAACCTAATGTTATTTTAAGCTTCTTTAAGGATTAGAGGTTTTAATATCAACTTAACAATCTTTTATCCTGTCAAAATTCTTTTTAGATTACTTTAAATAGTTTAAATCTCTTATTTTCCTGATTTTAAGGCCTTCTGTTAAGTCGTCTATCCATATAAATGGAGTGCATTATCAGGGATCGACAAATTTATATGTCTGAAAGGAGAAATTTCAGAGCGATAGAGGCCAAATAAAGAAAAAATCCGCCAT # Right flank : TATTGCATATTTGATCAGAGGATGGGTTGAATGTTAGAAATTTTAGTTGCTTTCCTGTTTATCATAGCCTACGTCTTAATTATTTCCTGCATAATGGGTATGATGATTGAATACATCAAGAAAAAAAGAGGTCTTAGATGATCATCCCCTTAAGGCCGATCAGTTCATGTAATCAAAAACGTCTTTTTATTAACTGAACAGCACCAAAGAGGGCTGTGAGGACCAGCACTATAACTGCACCTGAAGATACGTTGAATATATATGAGATCCAGAGGCCTGCGAGGGCCGTGATTATACCTATAGCAGATGCCTTAACCATTATATCAGCCATATCTGAACTGAAATCCTTTGCAAGTGCTGCAGGGATCGTTAGGAGGGCCATCACAAGTATTATCCCGGCGGCCTTTATGAGAACCACAACGCTTATGGCAACAAGGACAAGGAGGTACAGGTAGAAGGCGTCGACAGGGACACCCAGAACCTCGGCGTACTCCTCATCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCAAAATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 971264-966257 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP011952.1 Methanothermobacter sp. CaT2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 971263 30 100.0 37 .............................. TGTGTACCTTGTGGGTGTGAATAAGAAGAAGGGGCTG 971196 30 100.0 37 .............................. TTTTTTTCGATAAACAAATCAATAGCTTCTTCCCATG 971129 30 100.0 37 .............................. GATTGTTTTGAGGAGTATGGCTAGGAGGAAGCCTATT 971062 30 100.0 38 .............................. TGGTTTTTCGAAGACTGAACTTAGGACTGGTGATGTGG 970994 30 100.0 37 .............................. TTGTTTCTTCGATGCAGTAGATTGATAGGCATAGTAG 970927 30 100.0 36 .............................. ACCAGGTCGACGCCCTCAGCGGGGCCTGGCACACCC 970861 30 100.0 37 .............................. TTTATGAGGTGTTCGAGTCGTGTTACATGCACATTAG 970794 30 100.0 37 .............................. ACGGGAACATAAGAAGAGAGCTTGCAGAGTACTAATT 970727 30 100.0 37 .............................. TCGATATTGACGAAAAAAAATGAATATGGGAACTGGA 970660 30 100.0 38 .............................. TTCATTCTTCAGTAATCATCGCGTCCCATCATACGCGA 970592 30 100.0 37 .............................. CTTCGTGGCTTCACAGATGATGGGTAAGAGTGCTATT 970525 30 100.0 37 .............................. TTTAGAGAGACACATATATATATTTTACGGTTTAAGT 970458 30 100.0 38 .............................. ATATAAGTGAAGAGAATATAGAGGACTTTATCGACCTT 970390 30 100.0 37 .............................. CTGGACTCAGCAGATCGGAAGAGGGAGGCCTCTGATC 970323 30 100.0 37 .............................. GAGACCTTGAAACCTCACAGGATGTTGAGCCCGGGGA 970256 30 100.0 41 .............................. TAGGCTATATTGCCAATCGGAACTGATTGGCGACAGCAAGA 970185 30 100.0 38 .............................. TGGGCCTGGCAGGTTTTATTTCCTTATCCGGTGCATCG 970117 30 100.0 36 .............................. TGATATCTGGAAGATAATAGCGAAGGAAGTGTGGGT 970051 30 100.0 39 .............................. CGGAGGAACCTGCAGGATGGTGGTTTCAAACCCTCCTTT 969982 30 100.0 37 .............................. TAGTCTCTATGGGTTTTGGGTTGCCCGGTGGAGTGAT 969915 30 100.0 38 .............................. ATATTCTATATAATTTGTATTTTCTATTAGATTTATTT 969847 30 100.0 36 .............................. TCTTCCACTTGGGCTCAATCCTTACCTCGTCCTTCT 969781 30 100.0 37 .............................. AGAGGTGCCTTGCAGAGGCGGAAGCAATTTGGGAAGA 969714 30 100.0 38 .............................. CAGGGCATGGGGCGGCCCCTGTGATGTTGCAGGGCATG 969646 30 100.0 37 .............................. ACGACTTTGTTATACTCATGCAATGTAATGATGTTGC 969579 30 100.0 36 .............................. TCACAAGATCGTATAGGTCTTCGAAGAGCCTGTCGA 969513 30 100.0 40 .............................. TTTCAATATTATTTATTTTAACCATATTTATCACCTATTT 969443 30 100.0 39 .............................. GTCAGGATGTATGGGTCGCGATCGACGACATAGAAGCCG 969374 30 100.0 39 .............................. GGCCTGTGGTGCTATGGAGTCTCCCGCAGATATCCGCTT 969305 30 100.0 37 .............................. ATCTATATGTAATGGGTGATTTAGTGGCAAAAAACGC 969238 30 100.0 36 .............................. ACATTAACATATACCGGTTTACGACCATTCAATTTA 969172 30 100.0 38 .............................. AAATTTGTAATGTCAAACACAAAAAAATAACAATACAG 969104 30 100.0 38 .............................. GTGGAGATGATGAACCACCGTCGATTAGTAAAGTTAAA 969036 30 100.0 39 .............................. CAGTATCCCTATTTGGATAAATCGCGAAATGTGGCGTGG 968967 30 100.0 37 .............................. TATGGAATGGGTTGATTATTGCCCTGCATGCGGCCAC 968900 30 100.0 36 .............................. GTGTCAGTTGACGCCATCTGCAACTTGAATCTAATC 968834 30 100.0 38 .............................. AAATTTGTAATGTCAAACACAAAAAAATAACAATACAG 968766 30 100.0 38 .............................. GTGGAGATGATGAACCACCGTCGATTAGTAAAGTTAAA 968698 30 100.0 39 .............................. CAGTATCCCTATTTGGATAAATCGCGAAATGTGGCGTGG 968629 30 100.0 37 .............................. TATGGAATGGGTTGATTATTGCCCTGCATGCGGCCAC 968562 30 100.0 36 .............................. GTGTCAGTTGACGCCATCTGCAACTTGAATCTAATC 968496 30 100.0 37 .............................. ATGGGTATATTACAATGGTTGATGTGGATTATATGAG 968429 30 100.0 36 .............................. AGGAGGTCTCATACAAATCGGTTTACGGAGCCAAGG 968363 30 100.0 37 .............................. TCCCAGTCCTCTCCCAAAATTCAGCGGGTCTGGATCA 968296 30 100.0 38 .............................. TTGAAGTATAAATCCTCAAGTTCATCTATACAGAAATC 968228 30 100.0 36 .............................. TAAATTATATGATGAATCTTCGGTAGGTGATAAAAT 968162 30 100.0 36 .............................. ATCATAAAACCAGGAAAAAGAACAAATAAAAAAAAG 968096 30 100.0 36 .............................. AAATGCTATAAAACATGACAAGAACAAAAAAACAAA 968030 30 100.0 38 .............................. TGTTTCTATGTGCATATGTTTGTTTGTTTGTCTCTGGT 967962 30 100.0 37 .............................. TTTTCAGCCGCATATTCCCTGAAACTCAGTTCCTTCT 967895 30 100.0 38 .............................. AAGCAAACGGAGGGAGATAGTATGATGTATAGGAAAGG 967827 30 100.0 36 .............................. AGGATTGTGGACGGTGCATACGGCATGAACATGGAT 967761 30 100.0 36 .............................. AGTACTACTTGGACTTTAAGGCTGAGATGGACGCGG 967695 30 100.0 38 .............................. AAGACCTGCAAATCCTCAAGGGCCTGAAGGAGGATGAA 967627 30 100.0 36 .............................. TGGAAGGGGTTCACAGGGATATATGGGTTCAATATT 967561 30 100.0 37 .............................. TTCTTGACGCCCACCAAGAAAATACAAGACCCCTCCT 967494 30 100.0 38 .............................. TCTGGGCTCAGATGTGGATATAGCGGGTTTAGAGTTGG 967426 30 100.0 37 .............................. GATATTATCAAAAAAAGAATGAATGTAGGAACTGGAA 967359 30 100.0 38 .............................. TTTTTTATAATAAATATAAAAATTATTTATATTTCTTA 967291 30 100.0 37 .............................. ATACATATAACGAAGTAGATGTGGTATATGATGAAGG 967224 30 100.0 37 .............................. CTCAGAGAGTTTTCTAACATATCATATGAGATACTGA 967157 30 100.0 40 .............................. GCATCCTCACCACTCCTCTTCACACCGAGGAGAGCTGCTT 967087 30 100.0 37 .............................. ACCTTGGAGAGGGCCTCTCTCACTGGACCCCCAATGT 967020 30 100.0 37 .............................. GCCTTATCAGTCCCAGATTCCCATTCCGCGTTGAGTG 966953 30 100.0 38 .............................. CTCGTATGCTACTCTACTCACAGCTTCAGTTTTGCTGT 966885 30 100.0 40 .............................. ATCTAAAGCGAGGTTCTTTATGTAAACCTCCCTTAGCCAC 966815 30 100.0 37 .............................. CACAGCCATTCACTCTCACAACAAAGATGAAACATAT 966748 30 100.0 38 .............................. CCATGATCACGTGGTGCCAGGACGAGTAGGTCATCATC 966680 30 100.0 35 .............................. CTATCTCGTATTTCTGTATGTAGAGTGCTGCGAGT 966615 30 100.0 33 .............................. ATCGTAATCATAGGCTCTTCATAGCCACCAAAA 966552 30 100.0 37 .............................. ATAGTGATGAGTCTATTGACACCGTGATAGATACGTT 966485 30 100.0 36 .............................. TTGATACTAAGGCTGATTGGGATAAAGGAACTTTTT 966419 30 100.0 36 .............................. TTGATACTAAGGCTGATTGGGATAAAGGAACTTTTT 966353 30 100.0 37 .............................. CCTATATCAGGTAAGAGTGCAGCTAGCTGTATATCTT 966286 30 93.3 0 ..........................T.G. | ========== ====== ====== ====== ============================== ========================================= ================== 75 30 99.9 37 GCTTTAAAATAGACTGAATAGTATGGAAAT # Left flank : AAGTATCTGATGAGGCTGGAGTCCTATAAATTAATAAAACACTTTCTGGGCGATCAGAAATATGAGAGTTTCAGGGCATGGTGGTAAAACTGTAATTTATTATTTTAAGCATTTTTTTAGCAGGTGATTAAGTGTACCTCCTGGTGGTTTACGACGTTGATGTCAAAAGAGTTAACAAGGTTCATAAATTTTTGAAAATGTATCTTCATTGGAGACAGAACTCAGTTTTTGAAGGAGAAGTAAGTAAAGCGCAGTTTGGTGAGATAAAAACAGGACTCAGTGAATTGATAGATGATACATGTGATTCTGTGATGATTTATGAATTTCCCAGTAAAAAATATGTTTCTTCGCATGTCCTTGGAATTGAAAAGAACAGTATTGGGTTTATAATTTAAGTCAGCCTTTATAAATAAGAGTCATCATTATAGGCAGACTTATAAGCATGTTAAAACAAAGCATTTTCAGCAAGTATTTAGCCTAAAAACAAAATAATCGGCTCG # Right flank : ATGGAAATTCAGTCGTGAACTATATAGATTGCAACTGATAACCAGCTTTAATAGACTAAATTTAGTATTGGAATCAACTTAAAAAGGTTACAAGAAAGATTGTGTCATGTTATTTACCTTAATAATATGGAAGCCCCGACATTATACTTCGTAATATTAATGCTATAACGAATAATAGAACCGGTTGACCCCGATCTTATTTTATGATTAACATTTCATTACAGCCGGTCTCCTCATGGTACTTAACCTTCCTTATCTTCATGTCATAATCATTAAATTCATCCATCAACGGTTTGAGGTGTACAGAACGTTTTCTTCTGTGTATATTGTACACAGGAAATATTCTAACCTCTTTCCCGATCCTGAGCATCTCCCTCACAGATTCAGCATGGAAACTGTAGTCCAGCAGGTCCTCATACAGGAAAAGGAAATTTGCAGATACAACCATGTCAAATTCTCCATCTTCAAAGGGAAGATCCGGGAGTTCGCCGGCTATGTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAAAATAGACTGAATAGTATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //