Array 1 397739-402770 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGC01000001.1 Varibaculum cambriense strain UMB0744 ERR1203609.17957_1_21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 397739 29 100.0 32 ............................. CAGCTGAGGGCGTTTACCGGGGCGGCGGCCTC 397800 29 100.0 32 ............................. AGCCGCAACTAATCTAGCCTGGTGGCAAGACC 397861 29 100.0 32 ............................. TCTCTAGCCGGTTTGCGCCTGCAACCGAAAAG 397922 29 100.0 32 ............................. TCACGCGCTGCAGATAGCACCCAGCCCATATG 397983 29 100.0 32 ............................. CATTGGGGGGCTGAAATGTTGCGTTAGTGCAG 398044 29 100.0 32 ............................. CCACGCTAGACACGCACGCCAAGGGGCTTTTA 398105 29 100.0 32 ............................. CGAGACACGGGCATTATCGAAGGGCGCGTGTA 398166 29 100.0 32 ............................. CCTAGCGACACTTGTTTAATGTCTTGCGGGAC 398227 29 100.0 32 ............................. CCGGCGGAACCGGGTCAGAGACCGATAACTCG 398288 29 100.0 32 ............................. AGACCAGCCGCGCGGTAAAAGGCTGGTTAGGG 398349 29 100.0 32 ............................. GCATGGGCTAACGAGATCAGCGCTCTGTTAGG 398410 29 96.6 32 ............................G AATCGAGCGACGATCCCGACTTTGAGGACGAA 398471 29 100.0 32 ............................. GTTTTAGGCGCGCCGAACGCGTTCATCTCAAC 398532 29 100.0 32 ............................. CTCTACCGCGCTAGCACACACCCCGCTAAAAA 398593 29 100.0 32 ............................. AAACCGAGGGCATGATGAAAGCGTCCCTGAAC 398654 29 100.0 32 ............................. TCGATTTTTAGAGCCGCCGTCCCGGATAGGTT 398715 29 96.6 32 ............................T GCCAGGTTCTCAAGTTCCGCGGCCTGCTCATC 398776 29 100.0 32 ............................. GAGCCGGTTTGGGTCGATTGAATGGCCTTGCC 398837 29 100.0 32 ............................. GCTAGATAGCTGGGTGGCATTGCGGCCGGCTA 398898 29 100.0 32 ............................. CTGACGCGATAGACGCGCGTAGCCGCCAAAAG 398959 29 100.0 32 ............................. CTGTAATTATCCTGCAATCCCGAGGTTGCAGG 399020 29 100.0 32 ............................. TAGAAGAAGAACAAGAAGTTGAAACAGCCGTT 399081 29 100.0 32 ............................. GCCCCGAAAACAAGTAAAAGCCCTCACCAGAA 399142 29 96.6 32 ............................G ATGCTTCCACATACCCACCAGAACCCCAATCT 399203 29 96.6 32 ............................G ATAAAGCATTATCTAGGCGTTGTAGGGTGCTT 399264 29 100.0 32 ............................. GCCTAGCGGTTTAGGTTTTGGTCTGGTATTCT 399325 29 96.6 32 ............................T GATGCCTTGGACTACTCAACGGAGAGCCAAGT 399386 29 100.0 32 ............................. ATTTCTAACTCCTCATCATTGCTAACAAAATC 399447 29 96.6 32 ............................G GGCTACCTAAGTTTTGCGGTGAGAAAAACACG 399508 29 100.0 32 ............................. AAACAGGAAGCCAGCGACATCCTGCAGGCCTG 399569 29 100.0 32 ............................. GTGGTGGTGGCCTGTCGTGATTGCAACGCGAA 399630 29 96.6 32 ............................T ATCTGGGTCAGGAAACTCACCAGGAGTAAAAC 399691 29 100.0 32 ............................. AAGGTGAGACGTACCGCGGCTTATCAAAAGGC 399752 29 100.0 32 ............................. CAGATCATAGTCAACACCGGAGTGGGGCGGGA 399813 29 100.0 32 ............................. TGGTGGCTAAACCGCGCCGGGGTGGTGTGTAT 399874 29 100.0 32 ............................. CAGCCGTGATCTATCCCGACTGGTGGGAGGCA 399935 29 100.0 32 ............................. GGTGCAGCGAGTTGTGCACGACAGGCGATAAC 399996 29 100.0 32 ............................. CAGATCATAGTCAACACCGGAGTGGGGCGGGA 400057 29 100.0 32 ............................. CAAACCCGACCCACGCCCGGATCGCACTTGAG 400118 29 100.0 32 ............................. GCGGACACGACTTGAGCGAGCACCGGGACGAG 400179 29 100.0 32 ............................. CGTGGCGATGGTCGAGGCTATCGCGGATAATA 400240 29 100.0 32 ............................. TTTAGGAATGGACTAACAGTTATTAGCCTCGA 400301 29 96.6 32 .........................G... GGTAGAAACCTCTATCAAGCATCACAAATACG 400362 29 96.6 32 ...........................T. AGTGAACTAGCTCACGTAGTTTTATATTCAGG 400423 29 96.6 32 ............................G CCCTAGCGACCGCGATCGGTTGCGGGCTAATG 400484 29 96.6 32 ............................G CCCTAGCGACCGCGATCGGTTGCGGGCTAATG 400545 29 96.6 32 ............................G GCTCAGCCTCCGAGCGCGGCTCGAAGAATACC 400606 29 100.0 32 ............................. CCCGGCCGGTATCGAAGCGCTAGACCGCGCTA 400667 29 100.0 32 ............................. ACCGCCTCGCCTTTGGCTTTGTACTCTTTTAC 400728 29 100.0 32 ............................. CGGGAAAGGCTAGCGGGGCTGGTTTAAGTATA 400789 29 100.0 32 ............................. CGGGAAAGGCTAGCGGGGCTGGTTTAAGTATA 400850 29 100.0 32 ............................. CAGTGTCACGGTTATAAACGCAGGTCGATATT 400911 29 100.0 32 ............................. ACGGCGATTGCGCAACGCAACTCCCTAACCCT 400972 29 100.0 32 ............................. CGATAAGACCGCGCGGGATGAAAAGCGTAGCC 401033 29 100.0 32 ............................. CCGCCAAAACGGCACACGCACACACCGACAGA 401094 29 100.0 32 ............................. CAAGCGCGAGGCAACAAAGCACCCCGCCCCGG 401155 29 96.6 32 ............................G GACGCTAAAAAGGCCGGTTTTTCTTCTCTCCA 401216 29 96.6 32 ............................G AGAAGTTGACATGTTGCCACCTAAACCCGCCG 401277 29 100.0 33 ............................. CAGGCACATTTATTCTAGGAACTTCCCGGCTTG 401339 29 100.0 32 ............................. CGCTATAGCGTCCATTCCCGGGACAATAGCGG 401400 29 100.0 32 ............................. TAATACAGCTACTAGGGCAACGATAGCGGCAA 401461 29 100.0 32 ............................. CTGGCAAGAACGCGCCGCCGATCTGCTCGACC 401522 29 100.0 32 ............................. AATGGCAATAGAACATATTTCAGGAATCGGAA 401583 29 100.0 32 ............................. CCTGGCGGCACGGATCGAGCACCTATCCACGA 401644 29 96.6 32 ............................T ACGCCCTAGCACTACAAAACCGCATCCTCGCA 401705 29 96.6 32 .......T..................... CCTGGCGGCACGGATCGAGCACCTATCCACGA 401766 29 100.0 32 ............................. CCCGCAAGTCCGCGGTTGGCTCTACGGTGTCC 401827 29 96.6 32 ............................T ACGCCCTAGCACTACAAAACCGCATCCTCGCA 401888 29 100.0 32 ............................. CGGCGAAGACGTAATCCCATTCTTGCGGCTTG 401949 29 96.6 32 ............................G ACCTGGCGGGCATCGCCGCGCTAATAACCGCT 402010 29 100.0 32 ............................. TGGCAGGCTAATCAGACCTCAATCGGCATTGA 402071 29 100.0 32 ............................. TGGCAGGCTAATCAGACCTCAATCGGCATTGA 402132 29 100.0 32 ............................. TAATGAGCGAAAACTGGATCCTAGACACACCC 402193 29 96.6 32 ............................G GACGCTACTACCAGAAAGCCAGCGAAGACGAG 402254 29 96.6 32 .....................G....... CCAGTTGGCAGCCCCGCTAGCGATACTCTTTA 402315 29 93.1 32 ....A.......................G AACGTAGCGGCAGCGGCTCAGCTCTCGGGTAA 402376 29 96.6 32 ............................T AGTAGATCGGGTGAATATTTTCGGGTTTTATC 402437 29 100.0 32 ............................. CCTAATCTATGATCCCCCCGGTACGGACGAGC 402498 29 96.6 32 ............A................ CGTGCACCATCTCTCCAGGATCTATCTGCAGA 402559 29 100.0 32 ............................. TGCATATCAGAGGGCTTAAATTGAATTGGGGT 402620 29 96.6 32 ............................G AATGCTTCAAGGTCGCCCCCTTGGAACATATC 402681 29 96.6 32 ............................G TTTTGTGGCTGGTACGGGATGCGCGGCTATTG 402742 29 86.2 0 .....................G...AAA. | ========== ====== ====== ====== ============================= ================================= ================== 83 29 98.8 32 AAGTGCCCCGCACCTGCGGGGATGATCCC # Left flank : TGAGGTGGGGGAGACTCCGTTTTGATGGTATTAATCTTAACGGCCTGCCCTCCGGGTTTACGGGGATACATTACGCGCTGGCTTTTAGAGGCATCTCCGGGAGTGTTCGTGGGAAGGTTATCTGCCCGGGTCCGAGAGAACCTCTGGAACTTGGTAGTTGCTGAGCGGAAACAGGGTAAGGCCTTGCTAGTGTATTCCACTAATAATGAGCAAGGTTATGCTGTGCGCTCCGCTGGTCATAAATGGAATCCAGTGGAACTTGAAGGAATGACTTTGCTGCAGCATCCCGAGCGAATCAGATCTAATAGCCAGGCGGAGGAGCGTTGTCAGCGAGAACCGGGCCGGCAGGAAGGGGTAGGTGGTAGCAATGAAGGATATGGGTGGTCAATAGCTGCTAGGCGCCGAAAAATGCGTAGGCGTAAACCCTAATAATCTGAGTAAGTACCTATAGGATGGCGTTAAGAGGGGATATTTTGGATCGATATCCCAGGTCATCGAGT # Right flank : CGATGACTTATGATGAGCTTTACACTGCTTCGCGTGCTTTCTTCGAAGCTAATGTTACCTCTGAACAACTAACCCTTCTAGACAGTCATGAAAAGTGCGATGGCGCTGGTTTTGTTGATGCCGTCTTGCTTTTTATCGATATGTTCCTCGGTGATATCCCGGGCGTACCCGAAAAAATCACCAAGTGGCGGGAAATTTTAGACAGTCTCCCGGAATACGATTAACCGATAGTCACCACGGTTAAAAATCTACTCCTAGCACCGGGAAGGTTTCTCTTCCGATTCGGATGCATCTTTACCGGGGACTGGCAAATGTAAGTGGCGGTAAACTGTTTCACCTGCGTCTTTGATCTCGCCGCGTTGATTAGCGGTTCTACCAATCAAGTGCGCACCAATCGGTGCGGTCAGAGTTTGCAACACAATCGCTAGCAGCACTACCGTCAGCCACGACCAGGTTTGGCGAATCGCCACCAAACCCAGACAGGTCAAAATAAACCCGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTGCCCCGCACCTGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //