Array 1 436516-437136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQK010000002.1 Clostridium perfringens strain CHD30688R CHD30688R_seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================================================================================================================ ================== 436516 26 100.0 39 .......................... AAATCTACTTGAATAACTTGATTTAGTATAATTGTTAAT 436581 26 100.0 40 .......................... AAATCGAGATACTGTAGAGTTAGCTAATGCAACTTTAAAA 436647 26 100.0 40 .......................... AAATCTACTTATAACTACAAGAACTTTCTAAGGTTATCTA 436713 26 100.0 172 .......................... TTAAATAAGAACTTTAAATATTAAATTGTTGAAATAGGTATATTGCTATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAATATTTTATTAAACAATTAATGTTACAAAAATATATAAATTTATAAAATAATTATTTATTTTACAAAATTTGTTGGGTGGAA 436911 26 76.9 172 ...A..AT.......A.......A.A TTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTATAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCATAGAGTATTTAAAGAATGTCTTTAATGCATAAAATA A,T [436920,436925] 437111 26 73.1 0 T..T....A......T.G.....C.A | ========== ====== ====== ====== ========================== ============================================================================================================================================================================ ================== 6 26 91.7 93 ATTGAACCTTAACATGATATGTATTT # Left flank : TTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACCATATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTAAATCTTAGTATTTAATTAATGCATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATGAAATCACCTTTCAGACCTTGCAATAACTAAATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGACACTGAAATAACTAGCTTAAAGATAAATATAAAAACAAAGAAATGGCTATTTTACAAGCATTGA # Right flank : AAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATAGGAGGTGAGTATGGTGAAAGTTTTTCAACTAAATGTAAAGGTATATCTTTTAAATAATATAAAGCAGGAAGACGCTTTAACTGAAATTTGTAGTTTTATAGACACAACCTTAGCTAGAGATCAAGAGTTTTTAGAGCTACATAATAAAAATTGCTATAAGATGTATAGTTTTAATTCCTTTTATCCTGTAGAAGAAAATAGAATTTATAAAGAGGACAAGATATATACTTTTCAAATAAGAACTATAGATGTTAAGTTAGCAAATTACCTTTTAAATGAGCTTCACAAAAGTTACACAAGTTCAATAAAGGGGATAAAGGTTGAAGTCAAAGAAATAAATAGACATCATATTGAAAAAGTGTATTCAATAACTCCAATTCTTATTAAGAATGATTTCGGGTACTGGAAAAATCATATGAG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 446837-448567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQK010000002.1 Clostridium perfringens strain CHD30688R CHD30688R_seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 446837 30 100.0 35 .............................. GAATATAAGTGGTATATAGCTCCTTTTTCTCCACC 446902 30 100.0 35 .............................. GACTTAACAACAGATTCATTATCAGCCTTAGGATT 446967 30 100.0 36 .............................. AATACATGTTCGTAACCCATTTCTAGCGGACAGTTT 447033 30 100.0 36 .............................. AAATATGGATGCTTCTTTTGAAATTGATTTAAATAA 447099 30 100.0 36 .............................. ATAAAGATGAATTTTATATGCTTAAATTTATAAATT 447165 30 100.0 34 .............................. GTATCCAAGATTACAGCTTGAAAAAATTGAGTTA 447229 30 100.0 36 .............................. TCTTATTTCCTTTAGTAGCTATCTCAAATCCTTCTT 447295 30 100.0 35 .............................. GATCTTAGAAGAGATGTTGAGTTTTTAATTTCTTC 447360 30 100.0 36 .............................. AAGGCTTGGCGTATAGTTAGGATATCCGTATTAAAT 447426 30 100.0 37 .............................. TCCTTATTTCTAAGTTCTTCTAGTTTCTTGCAATATC 447493 30 100.0 36 .............................. TGAATACTTAGACCAGGAAGATGATTTTGAAGATGA 447559 30 100.0 35 .............................. GTAGGATTAAGGTTTGATATTGATTTGCCTAATAC 447624 30 100.0 35 .............................. TAAATAACAGAACTGTTTTTACCACTTTGTCCAAA 447689 30 100.0 35 .............................. AATATAGTGTTTACAATTCTTACGTAACTTTCAAC 447754 30 100.0 35 .............................. GCACCATCTACTGGCTTAGAAATTGGAGGATTATC 447819 30 100.0 35 .............................. TCGAATAAATCTGGGTTACTTTTTTGTATCGCAGA 447884 30 100.0 35 .............................. CGTGAAACATATACATGTTAGAGCCTTTGGTTTCG 447949 30 100.0 35 .............................. TTTTATATAATTTAAATCAATTACATTTATTATTT 448014 30 100.0 36 .............................. GAATTAGTTTTTGTTAATACATACGACAATGAATAC 448080 30 100.0 35 .............................. GCACCATCTACTGGCTTAGAAATTGGAGGATTATC 448145 30 100.0 36 .............................. AATGTAAATTCTTTTTCAACACTCTTATTCAATCCA 448211 30 100.0 36 .............................. CAGATTAAAAGCAAATGAATTTGGATATGAAGAGTT 448277 30 100.0 35 .............................. AAAATAACTATCATGGTTAAAGATATGAAAAAGGC 448342 30 100.0 34 .............................. ATATAAAGAGAGTTTAAAAAAAGAATATGATAAT 448406 30 100.0 36 .............................. AAGATAGTTGGGTAACTGTAACTGATACTGTAAATG 448472 30 100.0 36 .............................. GACCATGCACCTATTATTCTTTCACCTATTCTAAAA 448538 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.9 35 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTCAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACCCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAATTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGG # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGGTTATGAATATTGGAATGGCTTTATTTTTAAGCTTTTGTCTCTTAGCATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAAAGGATAAAGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTTCTCTATTATTATATTAGTTGTTTATATACTAAAGAATTATGATAGAGTTAAAAGCTATTAATATAATTAAAAGTAATATAATTTAAAAAATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //