Array 1 9687-7632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAZ01000023.1 Yersinia pekkanenii strain A125KOH2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 9686 28 100.0 32 ............................ GCGTAATGAGCAGGAAAACGCCCTGCATAACG 9626 28 100.0 32 ............................ CAGGGCGGCGGGCATGTTGGCAATGGCCGTCA 9566 28 100.0 33 ............................ CCCCTGACAGGCCCGGCAGCGACCAGCGGAGTG 9505 28 100.0 32 ............................ CCGCCAGTTTATCCAGGCAGCCATTGACCAAC 9445 28 100.0 33 ............................ ACATGAAGATACAACAAGAATAACTCGATTTAA 9384 28 100.0 32 ............................ AATCTGGATTATGCAGGGTTAGTCAGTGTGCT 9324 28 100.0 32 ............................ AAAGTTATAGCCAGTATCAAAGTCATTTCGCC 9264 28 100.0 32 ............................ CTAATGAATGGGCGGTTCCTGTTTATGCGTTT 9204 28 100.0 32 ............................ TTAAAATAATTCTTGACGTATTGCACTGATGT 9144 28 100.0 32 ............................ GCAAAGTGTCTCAACTGTGATTAGCATAGTTC 9084 28 100.0 32 ............................ TGTGCCACTTCTCAGAATGTCGCCAGCCGATT 9024 28 100.0 32 ............................ TTCAAGCCGTCATGCCTGAAGGTGTTCAGCCG 8964 28 100.0 32 ............................ TGACTACTTAATGTTTGGCAAAGGTGTCGGTA 8904 28 100.0 32 ............................ CTCTTGACAAAATAAATAAAAGGTATGTTGGG 8844 28 100.0 32 ............................ ATCAATCCACATGCCGCGCTGGGCGTCCCGCA 8784 28 100.0 32 ............................ TTCACAATCCAATTCAACCACTCGGCCATCAC 8724 28 100.0 32 ............................ TTGATGCATAGACAATTCATGGATAGTAAGCT 8664 28 100.0 32 ............................ AAAATCCAGGTAGAATCTTTTCTCGCAATTAA 8604 28 100.0 33 ............................ GTAACCGCGCTTTAGCGCATCACCGGCAAAGTT 8543 28 100.0 33 ............................ GGCAAAGAAAATCAGCGGTATCAGTACCAGTGC 8482 28 100.0 33 ............................ CGATCGGGAGTCTGTTGATACGGTCATGGAAAA 8421 28 100.0 32 ............................ CGTTCACCCGGACATAAGCCACGCCGGTATAT 8361 28 100.0 32 ............................ AAAATGCTTGAGAATCTAGATTAATACGTTTA 8301 28 100.0 32 ............................ AAGGTGCTGATAGACACGACCCTAAAAAGAGT 8241 28 100.0 32 ............................ ATAAGGCGCTTCACCTAATGCTTAATAACTCT 8181 28 100.0 32 ............................ AAAGTTAAAACAATTATCTTTGATGAGTTTAT 8121 28 100.0 194 ............................ ATTAGCTGATTCATATAAGTATGGCTCTCTGAGAGAGCCCCTGTTTAAGAGAAAGCCTTCTGACTTTAAGTATGGTTTCCATGCACGGCATCCAAGGAAATCTCCGTAAAAACGGAGAGTTTATCAATAATCAGGGTGGTGCACTTTTACACCATAATTCCCCGATCCCTTGGTCTACTTTTGCACAATATTTA 7899 28 89.3 32 ACA......................... AGACTGCTCATCACCAGCGTATTGAGTGGCCG 7839 28 100.0 32 ............................ TGTCAAAGTCGGGAAGATGTGTGAATCGCTTA 7779 28 96.4 32 ...........C................ TCCTAAACGAAATAATGACTCTAATTCTGGTA 7719 28 96.4 32 ...........C................ ACTCCAATCATCATTAACATGAGTTCTTTCGA 7659 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 32 28 99.3 37 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGATTTAGTTGAATTGCAGTCTGCTGGCTGGTTAAAAGGTTTGCGGGATTATTGTGAGTGCAGTGAAATTTTTCCGATACCGGCAGTCGTTAAATATCGTGTAATCCGCCGTGTGCAAGTGAAGAGTAATGTTGAACGGTTACGTCGTCGTTCGGTCAGTAAAGGGTGGTTAACGGAGGAAGAAGCGAGGTTACGCATTCCAGACAGCCATGAACAGCAGTGTAATCTGCCTTTTTTACGGTTAAAAAGTCTGTCCAGTGCACAACACTTCCTGCTATTTGTTGAGCAAGGTAAGTTGCAGGAAACGCCGGTTACAGGAGTGTTTAGTGCTTACGGTTTAAGTACCAATACTACCATCCCCTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAAGCTATTGATTTTATACAGGGTTGGCCGAGAGTATTAAAAAAGCCTTTTTTATCAATCCAATTGATTTTTATTTTATAATCAATAAGTAATGTATATTGTATAACG # Right flank : TTGGGATGCAAAAAAACCTCCCTGAGCATGTGCAGAGGAAGGCTATTGATAACAAACTACTTTTACACGCTCAGGTCTGGTGCGAACGCAGCCGAACGACAAAATTAAAACAAAAAACCCGCCTAGTGACCTAAGCGGGTTTCTTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTACAGAGGAATTGTGTGAACGAGGCGAATCATAGCGGGGGTGGTGATGTTTGTCAAAGTAGAAAAACACTAAAATGTGCGTTTGCTGAGAGAATGAGCTTATTGGCTTGTTTTTCAGCAAACTTGTTTATTTCCCCGTGAGTTATCTGCTGCACAATTTGCCCCAAGCAAGCTTCGCATCCTAACGTGGATAAGGTATAGTTCGCCTTTTATGAAGGTACCATGGTGAGCAACTTATCCATTCGTCTTAATAAATACATTAGCGAGAGCGGTATCTGTTCTC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19185-18495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAZ01000023.1 Yersinia pekkanenii strain A125KOH2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19184 28 100.0 32 ............................ GTCATTCCCCATATGAACACGGCTATGTGGGA 19124 28 100.0 32 ............................ AGCATCAGTTGTGCCAGTGAACCGTCTGGTGT 19064 28 100.0 32 ............................ TCTTGCCTTAATCATTGCGTCTGCGATTAAAT 19004 28 100.0 32 ............................ ATTACGCAGTAAACCAAAGAAAGCAGCTTAAG 18944 28 100.0 33 ............................ CAATCTGGCGGAGCTTTATCTGGTTTTATGTAT 18883 28 100.0 32 ............................ GTTACTAGGAGTCATTAAATAAGGTAGTTTCG 18823 28 100.0 33 ............................ CAATAACTCATATAAGCATTGCACTCGCGAACT 18762 28 100.0 32 ............................ TAAATACAGCTCAATGCGATGCGTCATTGATT 18702 28 96.4 32 .......A.................... ATAGCTTTTAAAGATGATTACGAACATCTCAA 18642 28 100.0 32 ............................ ATATTAATCATCTGATTCATATAAGTAACATA 18582 28 100.0 32 ............................ CGATAACGTCTACACTAATCTCTTGCATAGTA 18522 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTTAGGGCTTCTAATTCGTTCACTGCCGCACAGGCAGCTTAGAAAGCAGGCTAGAGGACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : TTTGAATAATGGTTAGGGAGCATTTCATGGTATTAATATTGTGCAGGTCTATATTCTGGCAATAAATGGTCACTCACTGGTTAGATAAATCTCGACAGTGAAAGCTGTTATGAATATTGCCCTAAGGAGATTGTTGGTTATGGATAACAGGATCCACTCCACGGATTTGAAAACCATTTTACATTCCAAACGTTCAAATATTTATTATTTAGAATATTGCCGTGTATTGGTTAACGGGGGTCGGGTTGAATATGTCACCGATGAAGGTAAACAATCTCTTTATTGGAATATCCCAATAGCGAATACCACCGTCATTATGCTCGGAACTGGGACATCGGTGACTCAAGCTGCCATGCGTGAGTTTGCCCGAGCAGGAGTCTTAGTCGGTTTTTGTGGTGGCGGTGGGACTCCGCTTTTTGCGGCTAATGAAGTTGAGGTCAATGTCTCGTGGCTAACGGCACAAAGCGAGTACCGACCAACCGAGTATCTGCACGACTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 20329-19639 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAZ01000023.1 Yersinia pekkanenii strain A125KOH2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20328 28 100.0 33 ............................ TTAGTTAGGTAATTCAGGCCACTTGATATCGGA 20267 28 100.0 33 ............................ CTAAATTAAATGTTCGCAGTACATTTACTTATG 20206 28 100.0 32 ............................ AGAACGAGATGACTGCCTTCTATTTGCCATAC 20146 28 100.0 32 ............................ TCAAGCAGCTCGTTAGCGATGCGAGTATAACC 20086 28 100.0 32 ............................ CAACACTAAAGATAAAGAAGGCTGCGCAAAGC 20026 28 100.0 32 ............................ TCGAGAAATAATACGGTACTCAATTAATTTTC 19966 28 100.0 32 ............................ CACAGGTCACCACGCCAGACCCAGTTAAATGG 19906 28 100.0 32 ............................ GATAATTCACTTTACTATAGTAAAGTAATTAT 19846 28 100.0 32 ............................ CCGGCTGCTTACCAGATTTAATATGGCCTATC 19786 28 100.0 32 ............................ TGAAACGCTGGTTAAAGATATCGACAAAATGC 19726 28 100.0 32 ............................ AGATTGATAGTTTATTTTAGGGCTTCTAATTC 19666 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGGCTGATGCTTATGTGGCAAAATTTGAAGTCAACGAATTAGAAGCGGCCATTCACAGTGCGTTGAATTCAAAGAAAACACTGAATTTGTAGCAGCCATGGTATTTCTGCGGCCTTTTCCTTAATGCTGTTATTGGCAGGAACGGGCCGACATATGCGATGGATTGAATTACACCGTTTGCCATAGACACTTTGTAGCATCAACAATACCGCTGCCGGAGCAGGGTATCTTCCTACCCAGTAAACAAAATTAACTAACCCTCAAACGCGTGATTAGTGTCTCCAGCGCGATTATCAGCGCGGCGGCTAATAGTCCGCCGTGGCTGGTAAGAGTAATGCAGAACGATGACGCCACCATTTTCGGTTTTTAACCCTCTTTTTTCGGTAAATTCTAACCTATTGATTTTATATAGGATTGGCCGAGCGCATTAAAAAAGCCTTTTTTGCTCTCTCAGCCTATTTTTCTTTTATCATCAGAAAGATATGTGTATTGTATAACA # Right flank : GCAGGCTAGAGGACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCACTGCCGCACAGGCAGCTTAGAAAGTCATTCCCCATATGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //