Array 1 27675-26210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZC010000011.1 Campylobacter concisus strain H32O-S2 ASC2_t_contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 27674 37 100.0 40 ..................................... GAGCTAGCAACTTATTTTCAATGCCCTCAGCTTCTTCAAA 27597 37 100.0 40 ..................................... ATGAGTGTCATACTGTAATAATTAGCATTCTCCTCATTAA 27520 37 100.0 35 ..................................... ACCTTGTGCACTAACTTCGGTTCTGACATCATTAT 27448 37 100.0 37 ..................................... AGAAACTCATAAGTGCTTCCTTACCAGTTCCTTGAGC 27374 37 100.0 38 ..................................... TAGACGTTGATTGGGCACCCAATGTATACCATTGCCCC 27299 37 100.0 36 ..................................... ATGCAGACGCATCGTTACCGCAGAATTTAACTGCGG 27226 37 100.0 39 ..................................... GAGCTAGCAACTTTGTTTCAATCTCCTCCATGTCCTCGA 27150 37 100.0 38 ..................................... TGAGTTGGGTGAGCATGAACATCTCCACTAAAAGCTAA 27075 37 100.0 38 ..................................... AAATTAGACATTGTAATCTCCTTGTAAAAAATAAAATT 27000 37 97.3 39 ................A.................... GTCTAGCAAATTTGAATTTTCATTTTTTTCATTTTACTC 26924 37 97.3 38 ...........................T......... TTTTTATATATTGTTTATCATCAGGAAGATTTTTTAAA 26849 37 100.0 33 ..................................... ACTGTAATAATCAGCTTCGCTCTCGTCTATTTC 26779 37 100.0 38 ..................................... AATTTGGTTTTTACCTTTAATTAAAAAATCACCTGGGC 26704 37 100.0 41 ..................................... CACCTGAAGACATGAAAGAGAGGTTAAATTCCTTAACCTCC 26626 37 97.3 40 ......................A.............. GACCACTAGGTACCTTAATGTAGCAGTGTTCGATACCTTT 26549 37 97.3 38 ......................A.............. AACACTAGTGTCAATAAGATGTACTTAATGTACATAGG 26474 37 97.3 40 ......................T.............. ATCTAATGTCATGTACTTGACATTTTCGCAATGTCCACTT 26397 37 97.3 34 ......................T.............. TCAGTTGCGCCTTCTTCTAGACATTCTTGCTTAG 26326 37 97.3 40 ......................T.............. CATTTTCTTGCTCTTAGAAAAATCACGATAGGGCATAAAA 26249 37 97.3 0 ....................................T | AA,C [26215,26218] ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 98.9 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTTGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCACGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTGAAAAGAGATTTGCGAACTTTTTTGAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTGGTAAAGTTTTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTGGATAAGAACAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGGTGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTTACATAGACTACTTCAAATGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 55777-57115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZC010000011.1 Campylobacter concisus strain H32O-S2 ASC2_t_contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================== ================== 55777 33 100.0 44 ................................. ATCCTCACAAATATCTGCAAGTAATGATGAAGCTATTTCTATTA 55854 33 100.0 43 ................................. AGTATTCTTCATCAATGAGAGCCATGCTGTAATAATCAGATTA 55930 33 100.0 46 ................................. GCTGACTCTGCAACTAAATAAGAAGCAAGCTCTTGCAAGCTTATTA 56009 33 100.0 41 ................................. AAAGCTGATGTCGTAATTGTTAAAGAGTTGTTTTCATATTA 56083 33 97.0 43 ..............T.................. ATCTCCGTTTGAATAAGTGCTAGTGGAGCATTTATAAAAATCC 56159 33 100.0 42 ................................. CACAAAGAAGGTTAAGCCGTTGATTGAGCGTCCTAAAGATCT 56234 33 100.0 44 ................................. GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTAATCT 56311 33 90.9 45 ................G....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAGATCT 56389 33 100.0 39 ................................. TTTAACAATCGCCGAAACGTTGCCAATTCTCATCAATTA 56461 33 100.0 43 ................................. ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGACATCT 56537 33 100.0 45 ................................. AATTTAGCTCTAGTTCTCATTTTTAATCCTTTTAAAAAAATATTA 56615 33 100.0 44 ................................. TTAAGTGGCGCACACCAGCTCCTTTCCAATCTTTTTCCCTATCT 56692 33 100.0 50 ................................. AAGCCAGCTCCTTCAACGCCCATCCATAGCTCTGTTCCCATGGTTTATTA 56775 33 97.0 41 ....T............................ ATTTGTCCCTCTTCGTCAGGGTCACCGCAGTGAACAAATCT 56849 33 100.0 50 ................................. AAGCCAGCTCCTTCAACGCCCATCCATAGCTCTGTTCCCATGGTTTATTA 56932 33 100.0 41 ................................. ATTTGTCCCTCTTCGTCAGGGTCACCGCAGTGAACAAATCT 57006 33 100.0 44 ................................. TTAACTAAGACCATACTGAAATAATCAGCTTTGTCTTCGTATCT 57083 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ================================================== ================== 18 33 99.0 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTGCTCTTTTTTGGCTCACGTGAAGCCTGTGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGCGACCATAAATTTATCCCTAAACGAAGCCAAAACGTCTTTACACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGATAAGCATAGGCGAGGATAAATTTGCACGCATTTTAGCAAAACTCACAGCCTCGTCCAAAAAGCCAGAGATCACCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTGGGCTATTA # Right flank : TAGGCAGGTCTTTCGAGTATAGTTCTCGAGCATTAATTCATAGATACATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGCGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //