Array 1 1027-326 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQF01000025.1 Bifidobacterium longum strain MCC265 NODE_25_length_946_cov_60.093021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1026 29 96.6 32 ............................T TCATCACCCTCCCAAGTCTTGCACATCTCATA 965 29 96.6 32 ............................T GCCGCCACGGACACGGAAAGCATCGAACAGAT 904 29 100.0 32 ............................. GCGGTGGAAGCATGAGCATCATCAGCAGTGAG 843 29 100.0 32 ............................. CAGGAGACTCGCATGGGCATCTTGTCGCCGTC 782 29 100.0 32 ............................. ATACGGTCGGGGTCGGAGTCGGTGTCCTGCTC 721 29 100.0 32 ............................. GCGGGTGCGGCTGTCATCACGCTCAAGGCGGG 660 29 100.0 32 ............................. AACGTGCCGAGGTTCGTGAGGAATTGCTGACC 599 29 100.0 32 ............................. CATCACAGGATTACACGGCGACGGTGGATGCC 538 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 477 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 416 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 356 29 82.8 0 ............C......T....CG..C | CA [332] ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : | # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTACGCGTCCAGTTCGTTCTTGAACTCCTCGTACGAGGCGAACCGGCGGCCGGTGTGGAACTCGTCCTTGAGGTGGCCGAACACCTGCTCGGTGGCGGCGTTGTCGATGCAGTTGCCCTTGCGGTGTGTTTTAGCAAGTTGGCGTCCGCTTTGTGAGCGGTGTTTTTCCGCAGTGTAGGCAGCGGGTTTTCCGCAGGGTGTGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112011-113686 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQF01000034.1 Bifidobacterium longum strain MCC265 NODE_42_length_113927_cov_95.431664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112011 29 100.0 32 ............................. GGCGGCGCCGGCAGTCTCGCCAACATCGCCTT 112072 29 100.0 32 ............................. GCGTTCCGGCGCATACCCATCACCTACGAGGT 112133 29 100.0 32 ............................. TCGTGGGCTACGGCCTGCCGGTGGAACGTGAA 112194 29 100.0 32 ............................. GCGCGGGCGTTCTCGGCGTCGACGTGGGCGTG 112255 29 100.0 32 ............................. ACCCGGTTGAAGGTCAATGACCTCGAGTCGAA 112316 29 100.0 32 ............................. AGGGAGGACGTACCGCGCCGGATTGAACCCGA 112377 29 100.0 32 ............................. TCGCTCAGTCGCATGTCTCCATTGCGGAACTT 112438 29 100.0 32 ............................. TGTGAAAGCCTCTGGGACATACATCTCAGGGG 112499 29 100.0 32 ............................. GACGCTGGCGACCACTTCAAGAAATTCCTGAA 112560 29 100.0 32 ............................. TGCGCTATGAGGTCTCACAGGAACCCAAGGAC 112621 29 100.0 32 ............................. CAGAATTCAGTATGATTCTTGGCGGCTTGTTG 112682 29 100.0 32 ............................. CACAGGGCGATGCTCGATATACGCAGCAGGGC 112743 29 100.0 32 ............................. GCGTCCAGTACACAGGATTCCACCAGCAACAG 112804 29 100.0 32 ............................. GGGTTGAGCGACGAACAGGTAAGCAAGCTCGC 112865 29 100.0 32 ............................. AGTGTTACGTGCGAGGCGATTTGCCCGAGCAG 112926 29 100.0 32 ............................. TCCTTGAGCAGTGCTATAGTACGGCAAAACGT 112987 29 100.0 32 ............................. TATTTAGTGGTGGGGTAAGCGTCACCGGTGTG 113048 29 100.0 32 ............................. TCCGCCGCCATCCTGACAGCGGCCACGCCCAG 113109 29 100.0 32 ............................. ATGCTCAACATCAGCCTCAACGAGGACGGCCA 113170 29 100.0 32 ............................. GAAGTCGGGTTCGGTGACTGCCTTTTCCAAAG 113231 29 100.0 32 ............................. AACTTATAGCCACGGCGACTCTTCTTTTCCAC 113292 29 100.0 32 ............................. AAATAAATCACCCGACAAACCTCAGGAAGGAC 113353 29 100.0 32 ............................. ATCGACGTGGACTCGCTGTATCATCGGCTGGA 113414 29 100.0 32 ............................. GATGCCGGCCGTGAGTATGCACAAAAAGCTGC 113475 29 100.0 32 ............................. GGCACAGCGACCGACTGGGCGACCATCCTCGT 113536 29 100.0 32 ............................. AAGCGGGCCGCCCATGCAAAGTCGTGGTCGAC 113597 29 96.6 32 .......................A..... AATGAAACACACAGCAGAACAGTTATGGAAAA 113658 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : TCGGTAAGGCGATTCGGTCGGATGTAGACGTGGTTTGCCCCGCATGCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCGTGCCGATACTAGACTGGGAGCCGAACGTTTGCCCCGCATGCGCGGGGATGATCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-639 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQF01000024.1 Bifidobacterium longum strain MCC265 NODE_24_length_2030_cov_75.361084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1 28 100.0 33 ............................ TGTATCCATGATGATTCCTTTCCGCTGGAGTCT 62 28 100.0 33 ............................ GCCGCCGTACAACGCGAACTGGGAGTCGTGGCG 123 28 100.0 33 ............................ GGAGCGTTGGCATCTCGGAGTGTGTCGCGTTTG 184 28 100.0 33 ............................ CGAACTCATCGACAGCGAACATCTCGATGCCGC 245 28 100.0 33 ............................ TCATGCCGGGAATGGCCATGTGCTGGTCGTTGA 306 28 100.0 33 ............................ AGGGCCTATCCATACATTTATCAGGCTGATGTG 367 28 96.4 33 ....C....................... GCCGGCCGAAGACGCTGACAAAACGGCGCAAGC 428 28 96.4 33 .C.......................... CCATTGGGATTTCGACTGGCTCGATCGCATCAT 489 28 96.4 34 .........................C.. CAGTCGGAGGTCATTCCGAGTGCGTTGCCTATCG 551 28 96.4 32 .........................C.. CACGCGCGGGCGACCTGAAATGAGCCGAACTT 611 28 89.3 0 .A.........G..T............. | T [614] ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.7 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : | # Right flank : CGATGCCCTTTTCGAATTTCGTTGAACTATCACGACTTACCCCGCGCATGTGGGGATGGTTTCTTATCCGTTTTCCAATTTGCCTGTTATACTGAATACAGTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGATCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : ATCTACCCCGCACACGCGGGGATAACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 1406-1919 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQF01000006.1 Bifidobacterium longum strain MCC265 NODE_6_length_197066_cov_92.556160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 1406 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 1467 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 1528 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 1589 29 96.6 32 .......................A..... GACTTCGGCAACGCGATGGACTCGTGGATGCA 1650 29 100.0 91 ............................. GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 1770 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 1830 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 1891 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 8 29 92.7 40 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAATCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGATGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATAACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.71, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //