Array 1 685-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788258.1 Corynebacterium sp. HMSC05E07 Scaffold493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 684 29 96.6 32 ............................T CACCTGCTCAGCCGGGCCATGCTTCGTATAAC 623 29 100.0 32 ............................. ACGCCACCGTCGAGAAGGCCGTCATGGTGCAG 562 29 100.0 32 ............................. TGCACGGCGGCGTTGATGTAGCAGCCGGAGTA 501 29 100.0 32 ............................. AGTGATGTAGTTTCATTTGTGTAAGCCCAAAC 440 29 100.0 32 ............................. ATGCTGAATGAGTGGCCGTGCCCGTCGGTGCG 379 29 100.0 32 ............................. GACTCCCCCACATCAAACGACAACACCCGCCG 318 29 93.1 18 ...........................NN NNNNNNNNNNNNNNNNNN Deletion [272] 271 29 96.6 32 ............................G CGTTCATTGGTTCCGTTTCGGATAGAGTCCTG 210 29 100.0 32 ............................. GTCATCATTCGGGAAACAAAACGCCTCCAACT 149 29 96.6 32 ............................T GGGTAGGCGGCTGGGCGCAACAAAATTCAATA 88 29 100.0 32 ............................. ATCCGCCAATACTGTCACTGTGACTACAACCA 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 31 GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : A # Right flank : C # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53118-52451 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788275.1 Corynebacterium sp. HMSC05E07 Scaffold636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53117 29 96.6 32 ............................C ATTTCAACGTCCCCATCAGATGCCAATTTAGA 53056 29 96.6 32 ............................C CCCTCACCATCGACGAAGTGAAAGCCCTCCGG 52995 29 89.7 16 ..........................NNN NNNNNNNNNNNNNNNN Deletion [52951] 52950 29 93.1 32 N...........................C TTATTAATCATCATCTCCTGCCTCATCGTGCT 52889 29 100.0 32 ............................. GTTTTTGATGGCTACTGTTAAGGGCAATATTT 52828 29 100.0 32 ............................. GTGGCGCCGTCCTTCATTAGCTGGCCGAGGAG 52767 29 100.0 32 ............................. ACCAGATGGCCATCGGAATGTCGCACGGCACC 52706 29 100.0 32 ............................. GCGTGGAGGATAAAGCCGATGAGGCCTCCGAG 52645 29 86.2 15 .........................NNNN NNNNNNNNNNNNNNN Deletion [52602] 52601 29 93.1 32 N...........................C GATGACCTCGAGGGCGCGGACTCACTGGAATG 52540 29 96.6 32 ............................C GGGCACGCGTACCCCGGCCTGAAGCTTGTGGA 52479 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.7 29 GTGCTCCCCGCGTAAGCGGGGATGAGCCG # Left flank : GTGAGCTTGAAGTGATTGCTTCTGGAATGAATTGGGCCGAAGAGGAGACTCTTTCATGATGGTTCTCGTTGTCACTGCGTGCCCTGCAGGGCTACGCGGCGACTTGTCGAAGTGGCTAATTGAACTAACTCCTGGAGTTTTCGTAGGACGGCCTTCCGCTCGCATCCGTGATCTGCTGTGGGAGCGAACCACCGAATTGTGTAAGGACGGCCGTGCACTTTTGGTCTATTCAGCAGCCAATGAACAAGGCATGGAGTTTAAGACTCACCGCCATCACTGGACACCTTCTGATTTTGACGGCGTTACGCTCATGGTCCGCCCCACAACGAAGCCACAGAATGAGCAGAATCGAAAGGGGTGGTCAAACGCCCGCCGTGTTCGTTCCGCATATAGGAAGCAGAAAGGTGCATAACTAACCAAGTAGCCGATAGAACAAGGCACTATTCATAAAGCCGTATGTAAAATAGTGGCCAGGCTCGAAGACTTGCAGCTCAGCAAGA # Right flank : CGTCCATGTGTAGCAGTCATCGATGCTTCTCGGTGCTCCTGCGAGCGTGTGAAGTTAGCCCTGATGGGGTGTGTTCTGTCCGGCAGTTTGGTGTGCTGTTCGAAGGCTCTGGTTCTCGGTGGATTCCGGATCAGTGGCCCAAATGGGGGCTGAGCTTTTGCTGGTGCTGTCGCGCTTGTGGCACTGCTCGGCGCTTCCGAGGGCTCGGTGAGACCGAGAAGTGCAGCAGACTAGTGGGGGAGTCATTGCCGCAAATTGCTGTTTGAGGGTCCTGCCGATTAATGTTGCGGGGAGCGGATTCGCTGCTGAGTGTGGCGCGGCTGGCTGTGAGCCGGAGCGGACACATGAGTAATGAATACGCGGGGCTATAGCTCAGTCGGTTAGAGCTACGGACTCATAATCCGTTGGTCCCGGGTTCGAGCCCCGGTGGCCCCACCATCAGGCTCGCTGTCGAGCGTCGCCACGACGCTGGCGGGCGAAGCGAACCTCAATGCGAGAAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82021-79119 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788275.1 Corynebacterium sp. HMSC05E07 Scaffold636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82020 26 89.7 32 ---.......................... CCGCGCGAATTGCTCGGTTTCGTGTTCCCGAA 81962 29 100.0 32 ............................. ACCGCCTGCGCGCCGTCCCACACCATCTCGAC 81901 29 96.6 32 ............................G CTGAGGCGTGCGGGGAAGGTGGCGTCGCGGTT 81840 29 100.0 32 ............................. TTTGTCCCGTTTGTCCCTGTGGTGATGTTTGC 81779 29 100.0 32 ............................. GTCTGGGGGTCAGCCGCCGCCAACTGAGTAGG 81718 29 100.0 32 ............................. GTCAGCCGCTAAAACCTCAAGCTCACGCTGTG 81657 29 89.7 15 ..........................NNN NNNNNNNNNNNNNNN Deletion [81614] 81613 29 93.1 32 NN........................... GCAGAATGAGAGGCCTCCCTAGCCGACACCGC 81552 29 96.6 32 ............................G AAGTTGGCGGAAGTCCGCGAGGATATTGCGGA 81491 29 96.6 32 ............................T TTTCCGACGGCATTCCACGCTTTACGAATACC 81430 29 100.0 32 ............................. AAATAGCACCAGTCATAGGGGACGTAGGTTGA 81369 29 96.6 32 ............................G TATGACGTGAATCAGTATGCGCTGACTACGGC 81308 29 93.1 15 ...........................NN NNNNNNNNNNNNNNN Deletion [81265] 81264 29 89.7 32 NNN.......................... CCATGGCGCGCCCATACTCGAACTCCTCTGCC 81203 29 100.0 32 ............................. TCGACTCCAGCGACGCAGACGACACCCTGCGA 81142 29 96.6 32 ............................G TCCCGGTCAGACGGCAGCGTGAAGTCCATCGA 81081 29 93.1 15 ...........................NN NNNNNNNNNNNNNNN Deletion [81038] 81037 29 89.7 32 NNN.......................... CCGCATGGGGTGTTGCCGATGTGGTCGAAGCC 80976 29 96.6 32 ............................G TACCAGCAGCCAACTGCGCGTCCCGCTCCTCA 80915 29 100.0 32 ............................. CCTCCGACCATGGCCGAGGTGGAGTGGGACGA 80854 29 93.1 17 ...........................NN NNNNNNNNNNNNNNNNN Deletion [80809] 80808 29 93.1 32 N...........................G ATGTAAGGCAGAGAGCCCAGCAGAAAGGAAAA 80747 29 100.0 32 ............................. AAACTGGACACAGCGATTAAGGCTATCGTCCG 80686 29 100.0 32 ............................. CGCACACTGTCGGGCATGGCGACAGCGTTCAA 80625 29 100.0 32 ............................. TACCGCAGCCTGGGCGCGACCATCCACACCAT 80564 29 100.0 32 ............................. CAACCATGCTGAAACAACCTCAAATTTACCGG 80503 29 100.0 32 ............................. GAGTGGGTGATTAACGCCCGCTCCGCAGACCG 80442 29 100.0 32 ............................. CGCGATCCGCGTTGCAACCCGCTATGACCTGG 80381 29 100.0 32 ............................. CCTTAGCTCCGGCGCGTAGTTCATCGGGTGTG 80320 29 96.6 32 ............................G TCGTGCCCGTGCTCATTCGCGGCCGCATGGTG 80259 29 93.1 18 ...........................NN NNNNNNNNNNNNNNNNNN Deletion [80213] 80212 29 100.0 32 ............................. CTGTCACGAGAGTGTCTAAAAACTTTGCCGGT 80151 29 96.6 32 ............................G ACATCTGGGGCAGAATCGAAGCCCCCAGCGTG 80090 29 96.6 32 .G........................... CTCGAGTCGTACCGCGACACTCTCGTCGGTTA 80029 29 100.0 32 ............................. AATGGCTGCGGAAGGTGACTAACGGCGACTCC 79968 29 96.6 32 ............................T GGCGAGAAGGAGAACTAGTCACCAAGGGAACC 79907 29 100.0 32 ............................. GCGACGAAGAAACCTACCTGACCGAAGCCACC 79846 29 82.8 14 ........................NNNNN NNNNNNNNNNNNNN Deletion [79804] 79803 29 96.6 32 N............................ AGGGCAGACTTGAGGAGCGTACCGGCGTCGGG 79742 29 96.6 32 ............................G GATGGTGAGCGCCTGGGCGCTGAGCCCACCAC 79681 29 96.6 32 ............................G ATTGCTCAGGCCGCGCTCAATACCGAGATGGG 79620 29 100.0 32 ............................. TCGGCGGTTGATGCCATCGACCGGGAACTGGA 79559 29 100.0 32 ............................. GCACGTACTATTCGTTCGAGGAAACGTTGGGG 79498 29 96.6 32 ............................G CTGGGTGTTTTGCGTAATCCAAGACCACGAGC 79437 29 100.0 32 ............................. GTGGTTGGGAGGGAACGAACGGCGCTGACATA 79376 29 93.1 17 ...........................NN NNNNNNNNNNNNNNNNN Deletion [79331] 79330 29 96.6 32 N............................ GGTTATCGAGCCCGATAGGAAGGAAGGGCGCT 79269 29 96.6 32 ............................G GGTTACGTAGACTCGGCTGTCGATAAGAAGGC 79208 29 100.0 32 ............................. GTGGCGTTTGAGGGGTACCAGCCCACTTTGCT 79147 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 50 29 96.7 30 GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : | # Right flank : GTTCCGGCAGTATGACCACCATAAGGGCCACCGTGCTCCCCGCGTAAGCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //