Array 1 8914-9735 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNSA01000014.1 Escherichia coli strain 710607 710607_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8914 29 100.0 32 ............................. AACATTAAATTGCCGTGCTGGATGAATCGCGG 8975 29 96.6 32 ............................C TGGATCAGCTGGTTCAATCGTTTACAGCACTG 9036 29 100.0 32 ............................. TCGTTCGAGGCGTTTCGCGCCTGGGCGATTAT 9097 29 100.0 32 ............................. TCGAAAAACTTCGTCCTGAAAAAATTCATCAT 9158 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC 9219 29 100.0 32 ............................. CCGGTGCAACTGATATTGATAAACGTCGACTC 9280 29 100.0 32 ............................. TTATACTGATTTTGATTTGTATTTCGGTCGCT 9341 29 100.0 32 ............................. CGATAGCATTCGCCCGACTCTAACAACGGGGT 9402 29 100.0 32 ............................. CAAAATCCTGCCGGGAAAAAATCGACAACCAT 9463 29 100.0 32 ............................. CCGGTGTAATCAAAGAGAAAAATCGCCTTTTT 9524 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9585 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9646 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9707 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACCTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 651-837 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNSA01000165.1 Escherichia coli strain 710607 710607_165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 651 34 100.0 44 .................................. CTGCCACGCTGAATGCCACGAATGACATTACTCTTATCGGGAGC 729 34 97.1 41 ............................A..... ACAACACGCTGACGGCCAGTAACATTACTCTTACCGGGGAA 804 34 97.1 0 ...............................A.. | ========== ====== ====== ====== ================================== ============================================ ================== 3 34 98.1 43 AGTACGAGTGGGAATGCCATCAACCTTACAGGCA # Left flank : AATTTGCACCCACCGCTGCGGGCTCTGCGGTCAGCAATACCAGTATCAACAACAGGCTGAACAACGGGACCAGTGTCACTATTCTGACCCATCACACAAGAACAGGCACAGCTCAGGGCGGGAATATTACCGTTAATGCGGCAATTAACAAAAGCAACGGAAGTGATGCCAACCTGACGCTGCAGGCTGGCGGCAACATCACGGTAAACAGCAGCATCACATCCACAAATGGTAAACTGAATGTAAATCTGTCGGGCGCCAGGACCAGCAATGGCAGTATCACCATTAGCAATAACGCCAATATAACGACCAATGGTGGGGATATAACTGTTGGGACGACAAATACTTCAAACCGTGTGAATATATCTATTAACAACACTACCCTGAATGCGTCAAATGGCAACATCCAGTTGACCGGGACCGGGACCGGGACCGATAGCGGGATTCTGTTTAATGGCTGCAACACGCTGACGGCCAGTAACATTACTCTTATCGGGAGC # Right flank : ACTACAGGCACTACCACGCTGAATGCCACGAATAACATCACTATGCAGGGGACCCGTGTTCAGATTAAACACTCCAACATCACCGCGGGCAACTTTGCGCTGAATGCGACAGTGGCCGGCTCTGAAATCAGCAATACCACGCTGACGGCCACCAACAACATCAACCTGACGGCGAACGGTGCGGGCACTGCTGTTTACCTGAAAGATGCAAATATTACATCCACCAATGGCAGTATCACGGCTAACGGTACTGCCACAGCAAACGACAATGCCACGTATCTGGACGGCAACGTCACCCTGAATGCGTCAAATGGCAGCATCAAGTTGACCGGGAACGGGCGCGGTAGCGCCTCCGGGATTCTGTTTGCTGGCAACAACAGGCTGACGGCCAGTAACATTGCTCTTACCGGGAACAGTACGAGTGGGAATGCCATCAACCTTACAGGCACTGCCACGCTGAATGCCACGAATGACATTACTCTTATCGGGAGCAGTACGAG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTACGAGTGGGAATGCCATCAACCTTACAGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //