Array 1 174561-176307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHONQ010000001.1 Phocaeicola vulgatus strain DFI.3.92 JOHBHGHA_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 174561 33 97.0 32 ................................G TAAAACGGAACTCATCCTTTCCATTAGCCGTG 174626 33 100.0 33 ................................. ATTGCTTCTGAAACTGTACAAACCTCAGAAAGA 174692 33 97.0 31 ................................C TTGATTATCAGACACTTACAAACAAATTTAA 174756 33 100.0 32 ................................. TGTTATGATTGAAACATTAATATTACTTGGTT 174821 33 97.0 34 ................................C CGGTATGGAGAACAACAAACAGAGCAACACTGTT 174888 33 97.0 33 ................................T GTTGTGAGTTTATTACCGATGAAGTTAATCGAA 174954 33 97.0 32 ................................G TCTGTTAATGAAACTTCGCCTTCCATTATTTT 175019 33 97.0 33 ................................C TTGGAACTTATTAAATCAAAATACCCAACTGCC 175085 33 100.0 34 ................................. ATTATGACACATAAAGAAATAGAAAACGAACTTG 175152 33 97.0 35 ................................T GCTGGGATGCGGCAGGCGAGATAGCCGGTGCCTGG 175220 33 97.0 34 ................................T TCGTCCTGTCGGTCGGCGACTATGTGGAGATATC 175287 33 97.0 33 ................................T GGGTAAAAATTTATTTTTAACAAATGATAAAAG 175353 33 100.0 31 ................................. GAACGTGCCCTAGAGAACGAAGTAATAGACC 175417 33 100.0 32 ................................. TTATAGTAATAAAGATCATTCGCCTCAGAATG 175482 33 100.0 32 ................................. GATATTATAGACCTGTATGGACTATATTGTGA 175547 33 100.0 33 ................................. AGGTGTAAATATGGAATGTGACGGAGAACCAGG 175613 33 97.0 33 ................................T AGATCTATTATAAAGATTACAGAGAGTAAAGAA 175679 33 97.0 33 ................................C GCAAAATGAAATGGTTGTGGATGTGAAAGTTAA 175745 33 97.0 32 ................................T CACCTGTACACCAGTATGGGTATTGAATGGGC 175810 33 100.0 32 ................................. CGATACAGCCTATATAGAGAAGGAGAAAGAGG 175875 33 97.0 33 ................................C CGTGAAATGGTTATTTTTATAAGGGTTTGCATT 175941 33 97.0 33 ................................T ATGGTTGATGCTATGAATTTTATGGGATCTCTA 176007 33 97.0 34 ................................G CAGGTATCCTTTCTTGAAAGAAAGGAACGATGAG 176074 33 97.0 34 ................................C GGCAAGACGGATGAGAGCACAGCAGAGATCATGC 176141 33 97.0 33 ................................C GTTGCAAAATGATTAAATGATGATGTCCTGAAC 176207 33 100.0 33 ................................. CCTTCGACTACCTGGAGGAGATACCTGCACATG 176273 33 93.9 0 ....................A.........G.. | TA [176292] ========== ====== ====== ====== ================================= =================================== ================== 27 33 97.9 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGGATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTATTATACTATCCCTTGTCGTTTATTTGTTATATTGTTGGTTATTAATGTATTATTATCTGTTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17713-18375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHONQ010000045.1 Phocaeicola vulgatus strain DFI.3.92 JOHBHGHA_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 17713 47 97.9 30 ...A........................................... ACTTGCATTCTTGGCTATTATCAGGCTGGT 17790 47 100.0 30 ............................................... CGGCCAGTATTTCTGTCTTTAACTGAAATA 17867 47 100.0 30 ............................................... GGGAGATGCTATCTCCAACCCAGCTTTCAT 17944 47 100.0 30 ............................................... CACGTAGAGCGATTTTAATTTCAAAATGGA 18021 47 100.0 30 ............................................... AGTTACAGAGAAAGAAAATTACTTTAAACT 18098 47 100.0 31 ............................................... CAATTGAAGGGATTGAAAATCACGTTGTTAA 18176 47 100.0 29 ............................................... AAATTCAGCACAAAGATAGCTATATTTCA 18252 47 100.0 30 ............................................... TATTAATGGAAATTTAAATATTCCTTTGTG 18329 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 9 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTCTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //