Array 1 48486-46957 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTY01000002.1 Vibrio cholerae strain 617 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48485 28 100.0 32 ............................ ACCGCCAGTCTCCAGAAAGTCACCTAACTTAT 48425 28 100.0 32 ............................ TCGTTGCAGACCAAAACAACCTGAACACTAGA 48365 28 100.0 32 ............................ TTTAAGATGCTTTTTTCTTGCTTTCACGAACC 48305 28 100.0 32 ............................ CCAATGCAACAAAGCCTGCTCATTATCTCGTA 48245 28 100.0 32 ............................ TTGGTCATCAACGGGTGTGAGTGTCTGTAACT 48185 28 100.0 32 ............................ TTTGATGTAATCGAAGATTTGAGGGAACTGCG 48125 28 100.0 32 ............................ TTTTGGGTTGGTACCCACAATCGAGTCATAGT 48065 28 100.0 32 ............................ TAATGTCGTCACTGCAAGTCGTGAATGGGTTA 48005 28 100.0 32 ............................ TCAAACTGAGCGCGAAGAAATCATTCAGAACG 47945 28 100.0 32 ............................ CTAACGTTACGTATTGGCGCTTGCATGATCAC 47885 28 100.0 32 ............................ ATATCGAAGCCGACCGTTGTGTTATTGCGGAT 47825 28 100.0 32 ............................ TAACGCACCGATCAGTGGGCATCTTTGGATCT 47765 28 100.0 32 ............................ TGCTGGTTTCGGTTCAGGGTCGCAAACGCGAT 47705 28 100.0 32 ............................ AAGTGTCCATGGTCGGGTTCGTCAAGATATAC 47645 28 100.0 32 ............................ TTTGGTTTGGCTTATGACTAGCGTAATGAGTC 47585 28 100.0 32 ............................ TTTCATCTGGCCACCCTTGTCGTAATTGTTAC 47525 28 100.0 32 ............................ CGCGCACTCTTGCGCCGTGTCGTCGTAAATCT 47465 28 100.0 32 ............................ TTCCATGAGCTATACACTGCCGTGGTGATAAA 47405 28 100.0 32 ............................ TAGAAAGTGCGTCCCGCCTTCTTTTTTATCTT 47345 28 100.0 32 ............................ TGACTCATTGAGGCTAGTGACATTCTGGTACC 47285 28 100.0 32 ............................ TTTGATCTCCAAAGGAATGCCGTTATCTGTGA 47225 28 100.0 32 ............................ ATTACGCTGCAGGTTCGCAAGCTCCGTTTCTT 47165 28 100.0 32 ............................ TTTTTCTGACTCCAGACCCCCAAACATTTTTT 47105 28 100.0 32 ............................ GAATTACGATAGTATTTCTGACGCAACTGATA 47045 28 100.0 32 ............................ AAAGCATCTGCTCGTCACGGTCAATCAAGTCT 46985 28 92.9 0 ......................G.A... | T [46965] ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATGGTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCGAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGAGATGCCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGCGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGCATGACTCAAGATGGCCGTGACGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16353-17940 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTY01000019.1 Vibrio cholerae strain 617 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16353 28 100.0 32 ............................ TAGATCGTTACTGTCGAGGATTGAAACGAGAG 16413 28 100.0 32 ............................ AAAAACTCAGGTGTATGAGCTTCAAAACCCTT 16473 28 100.0 32 ............................ AGAAAGAAATACTATGTCGCGCTTACGGTAAT 16533 28 100.0 32 ............................ TAGAGAATCATCGGTAGCTAAACCCTATAAGA 16593 28 100.0 32 ............................ ATACAGATTGGCGCAACATTCAAGTGCTTATC 16653 28 100.0 32 ............................ GTTGAAGCCGATGCGCAAGATATCGCGAGCAA 16713 28 100.0 32 ............................ ACCAGAGCTGGCTAGCTTCGAGCGTCAATATT 16773 28 100.0 32 ............................ ACTGCAAAGGAAAGCGGGACATACCCGTTTTC 16833 28 100.0 32 ............................ ATCCGGCGGTGCCGATGCCAGTACCGGTGGCC 16893 28 100.0 32 ............................ GACAAGCCTTACTCGATAGATTTTTGCATATC 16953 28 100.0 32 ............................ ATTCAGCAATGCGTCAACAAAAAGCTGTTAAC 17013 28 100.0 32 ............................ AGCTCAGGACAAAGGCGCGCCTTTCCCGTTGC 17073 28 100.0 32 ............................ TTCATCCGTCTCGCTGATTAAACACTGGCGTT 17133 28 100.0 32 ............................ GTAAGTGAGAGATTGACGGAACTGTATGATAA 17193 28 100.0 32 ............................ TTACCCGGCTGAGCACATCGTGTTCCGCTCTC 17253 28 100.0 32 ............................ AAGCAGATCGTCGGTGACATAACATCATCAAT 17313 28 100.0 32 ............................ TTTATCACATAGATTAAGCAGCAATAAAAACT 17373 28 100.0 32 ............................ AATTGCACGCAAAGTAGAAAAATCATTGTTAT 17433 28 100.0 32 ............................ CGACGCAATGCGCGGCTGATACTCGATCAACG 17493 28 100.0 32 ............................ AAAACAGCGTGTCTTGCGGCCAGAACTCAGCG 17553 28 100.0 32 ............................ ACCAAAGTCGACCACTTGGTTTTTAAACACCA 17613 28 100.0 32 ............................ ACAAACTGGGTTTGTTTGATGCCATCAAGCTG 17673 28 100.0 32 ............................ GCCCATGCCTGCTGGGAAGCGATGCCCCACGA 17733 28 100.0 32 ............................ TATACCAACCATCATGATCTGCCGATTGATAA 17793 28 96.4 32 ...........T................ ATTCGAGGACGAAATCCGCGCAGACAACTGCC 17853 28 100.0 32 ............................ AAACTCATCACGACCAGAGGATTCCGTCTCTT 17913 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGTCAGCGTTGTGTAACTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCCCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 380-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTY01000072.1 Vibrio cholerae strain 617 contig00072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 379 28 100.0 33 ............................ TTTCTTCTTCGTCGATGTAGAAAAAGAGAAAGT 318 28 100.0 33 ............................ CACAAGGCACTTTCACTCGTTGTTTGGCGTGAT 257 28 100.0 33 ............................ TTCAAGCTATCGAATTTTACTGAGTCAGGATCT 196 28 100.0 33 ............................ TGAGACTGATTTGGACGCTGTCTTATTGTCACT 135 28 100.0 33 ............................ TCGACCTCGGCGCCGTCCGTGGCATACATCAAG 74 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : TTTATTGAGTTGGCCAGTGCCGCAGCACTCA # Right flank : CCGTTCAAGAGTGGTCAGCAAGTGATCGACACCGGTCTTCCCCACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4913-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTY01000025.1 Vibrio cholerae strain 617 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4912 28 100.0 33 ............................ TATGGTGATCTGCTCATCGTCAGACCGCTTAAT 4851 28 100.0 34 ............................ CAGTACGACTTTGCATCCTATATGGGCATGTTTA 4789 28 100.0 33 ............................ TGAAAGGAACAGCGATTAGTGATTTGCGTGTTG 4728 28 100.0 33 ............................ TCTCAATGGTCACGGGCTATCCGTTAGAGTTTT 4667 28 100.0 33 ............................ CTGACACTAAACAAAGCTGACGCGCTTGATTAT 4606 28 100.0 33 ............................ TCAGAGTAGACCACGGCGCTCAGTCGTATACAA 4545 28 100.0 33 ............................ CAGTTGATCGCACAAAGAACAGGGCGCAGGAGA 4484 28 100.0 33 ............................ TACCTTACGGATATTTAATCGGAATCGCACTAT 4423 28 100.0 33 ............................ CTTTGTTTGAGCGGCTTTATCGTAGCAAACCAG 4362 28 100.0 33 ............................ TCTCCTGAAAATTTAGGCGATTACAAAGATTCT 4301 28 100.0 34 ............................ TGCACAAGCTCATGGATGATAGCTGCCTTGGTTG 4239 28 100.0 33 ............................ CGAGCGCGAGACTTTAAAAAGCCGATTGACTGA 4178 28 100.0 33 ............................ CAGGAAAAATCTGCCGATTTAAATTTTATTTTT 4117 28 100.0 33 ............................ CAGACACCAGTCAGCCAAGTGCTGATCGGTATG 4056 28 100.0 33 ............................ CCTTGCATACCGCGAGCCGCCGCCGCTCTATCA 3995 28 100.0 33 ............................ TACTGCTATGTTAGGTAGTGCCTCAGTTGCATC 3934 28 100.0 33 ............................ GAAAGAATTGATTTAAAGATGTGGGGCAGAGTG 3873 28 100.0 33 ............................ CAGGGGAAATACGGCGCGCTTCACTATGCATCA 3812 28 100.0 33 ............................ TTGAAAAGCTAGACCAAGGTCAAAACCTAATCG 3751 28 100.0 33 ............................ TCAAAAGTCGAAAAAGCGAAAGGGGGTAAGATG 3690 28 100.0 33 ............................ CCACTATGTCAGCGGCAATCCAGCATACAGACG 3629 28 100.0 33 ............................ CCCTGCCATCAACAAAAAAGCGCCCGAAAGGAG 3568 28 100.0 33 ............................ TGCCGTCTCGAAAACCTTGGGACGCTCGAAAAT 3507 28 100.0 33 ............................ TTTAGTCACTGTGAAGTTAAACAAGCCTAGCTC 3446 28 100.0 33 ............................ TATCCATTGAACGCTGCTTATCCCAATCAAGCC 3385 28 100.0 33 ............................ TGGCTGAAACAACAATATCAGGACTACCAGCAG 3324 28 100.0 33 ............................ CTACCAAAAGAAACATATCAACAACTCAAAGAC 3263 28 100.0 33 ............................ TCTCCGTGAGTAGCGCACAGCTTTAACTCTTTA 3202 28 100.0 33 ............................ CATTATCAGGATCAGAGTACGCGCCAACTTGAG 3141 28 100.0 33 ............................ TTAAAGCTGGCTGGTCCTCCTTCAACCTTTGAA 3080 28 100.0 33 ............................ TGTGTTTTTAGATGGGTTTTGATTCATTGCGTT 3019 28 100.0 33 ............................ TCATAAGCTGAACGAAATAAGCCTCATGTGAGG 2958 28 100.0 33 ............................ TGAGTTTACCCATTCGCAGTCCATTATACGGAG 2897 28 100.0 33 ............................ CAGCTCATCTATCGGTCTGTTAAGCTCGCGCTC 2836 28 100.0 33 ............................ CCCTCTATTTACTTTTATCTGTCTCTGGGTTAC 2775 28 100.0 33 ............................ TGCTCACAAATTCGGTTTTAATCGCGTAGGGCT 2714 28 100.0 33 ............................ TTCAAGGAGTGATCTTATTGGCCCTATCTAGCG 2653 28 100.0 33 ............................ TCGGACGTGATAAACCCGTCAGCAACGGATAGT 2592 28 100.0 33 ............................ CAAACGAGTGCAAAAACTCGTTGGCATCCTTGC 2531 28 100.0 33 ............................ TCACAGAGCTTAGTTTACTGCGTGCGTCCGGTT 2470 28 100.0 33 ............................ TTAGGTACTGGGTAACATCATCGTGGATAGTAG 2409 28 100.0 33 ............................ TGCTGCTGGTGTTGCAGGTTCTATGGGTGGAGA 2348 28 100.0 33 ............................ TTACCTTTACGCTTAAAGCCCATTGATGGTGTG 2287 28 100.0 33 ............................ CCTCGAAAGCGATTTTCTGGTTAAGTAGAGCCT 2226 28 100.0 33 ............................ TTCTGATACATAAGTCACCTATGAATTAGGGTC 2165 28 100.0 33 ............................ CCTCACCGCATTGGAAAATAAGGTGCGAGAGGT 2104 28 100.0 33 ............................ TTATACGAGAGTGAGTTTTTATCAATGGTCACA 2043 28 100.0 33 ............................ TTACATGAAAAAGATGGATACTACGCTTTAGCT 1982 28 100.0 33 ............................ TATGGAGCATGACTACGCCAAGGATATTGGACT 1921 28 100.0 33 ............................ CGCACCAGAGGCCAACGCTGAAAACGTAAGGCG 1860 28 100.0 33 ............................ TGCTAGTGTTGCAGCCTTTCTTACAACCTGACT 1799 28 100.0 33 ............................ CCGCATCCGCTGCCAGCTCAGCCAAGCGTGCCG 1738 28 100.0 33 ............................ TGGGATATAGACGTACTCCTAGACCCTGCTGGA 1677 28 100.0 33 ............................ TTAAAAAACACTTCGCCGCTAGTTTGAAATAAG 1616 28 100.0 33 ............................ TATTGGATGGTGTATTATATGCACTTATTGTTT 1555 28 100.0 33 ............................ CATTCGTTAAAACTTGCATCACAAGCCTCAACG 1494 28 100.0 33 ............................ CGGTTAAAACAAGACGCTTGGATTGCTTAGTTT 1433 28 100.0 33 ............................ CATCGCTTCACGCAGTAACTGCGCTTTGCTCGC 1372 28 100.0 33 ............................ TCTATAAATCATTTTTTTGAGAGTGATGATTTG 1311 28 100.0 34 ............................ TTTGTTAACCATGCTCTAAAGCCTTGCAAAATAA 1249 28 100.0 33 ............................ TGAGTGGCTTAACGCTTGAAGAAGCAAAAGAGC 1188 28 100.0 33 ............................ CCTCAAACGTCGAGCGCTGGAAGCCTATCACGC 1127 28 100.0 33 ............................ TGCCACGCCGAGAAACCAAGCTGCTCAGCTTTA 1066 28 100.0 33 ............................ TACCAGGTCAAGCACATATTTTAACGTCATCTG 1005 28 100.0 33 ............................ TACCAGGTCAAGCACATATTTTAACGTCATCTG 944 28 100.0 33 ............................ TAGCACGATCACTACGCCACTGCTAACCGTAAA 883 28 100.0 33 ............................ TGTAACCCGTCTAGCCTCTGGGCCTTTGGGTGG 822 28 100.0 33 ............................ CACTCGGTGATGTAGCGTTTGAGGTGAGCACGG 761 28 100.0 33 ............................ CGATCCGGGCGCGGTTGGCAACGGCTTGCAAGA 700 28 100.0 33 ............................ TACAAAAATAAATAAGCCTCACATGAGGCTTAT 639 28 100.0 33 ............................ CGCACATATCTGTGAGCTTCGCTTTTTCCATGC 578 28 100.0 33 ............................ TCAAAAATCAAGCTCAACAAGTCTATCAGCGAT 517 28 100.0 33 ............................ TTATCCTCAGCTTGGTCTAACACTTTCGGTGAC 456 28 100.0 33 ............................ CACTAAACCTTCAAACCTCAGCTGCCGCCATAT 395 28 100.0 33 ............................ TTTGTTTCAAAAAGGCGAGGTTTTGCGCGGAAA 334 28 100.0 33 ............................ CTCCACACCTTTTACGTTGTAGTTTGTCGCACC 273 28 100.0 33 ............................ CGTAACTCGTCCCAGAGATGTTTCCATAGTTTT 212 28 100.0 33 ............................ TATCGGCTTCCACCTCCATGACATCCGCAGGGA 151 28 100.0 33 ............................ CGTTCAAGAGTGGTCAGCAAGTGATCGACACCG 90 28 100.0 33 ............................ TGGCTCGGCGGTATTCCGGCGACCCGTTCGGTA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 81 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : CC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //