Array 1 2324-160 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVF01000028.1 Bifidobacterium pseudolongum subsp. globosum strain 1616B Contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2323 29 100.0 32 ............................. GACGCCACCAGCGCGATCGGCAAAGCAAGGGA 2262 29 100.0 32 ............................. GACCAGTACGATGCGATGCTCGCATTGTGCAA 2201 29 100.0 32 ............................. AAAGGCCAATCATCATGGCAGACACACCCATC 2140 29 100.0 32 ............................. CACCGGCAGCCCGTCCGGCTTGAGTTCGGCGG 2079 29 100.0 32 ............................. TGCAGGCCGGCAACGAAAAAACCAATGTGTTT 2018 29 100.0 32 ............................. CACGCGTCGACCGGTTGGATATGAAAGGTTTC 1957 29 100.0 32 ............................. TCGCCAAACCCGGTGACAAGTACGTGCTCGGC 1896 29 100.0 32 ............................. AACGGAGCTCACACCGGCCACATGGGACGGTA 1835 29 100.0 32 ............................. CCAATACGTGGCGAGGTCGGGCGGCGTGGTGT 1774 29 100.0 32 ............................. TGCGAGCCCCACTACAAGAGAAGGAGCGCCCA 1713 29 100.0 32 ............................. GAGACCACCATGAACACCGACATCACAACCCA 1652 29 100.0 32 ............................. TACCGGCGTCGATGTCCTTGCCGACCTGCCAC 1591 29 100.0 32 ............................. CGCTCGAACCACGCGGAGATGAACGGCGTGTA 1530 29 96.6 32 ............................A TTGTGGGTGACGGCCTTCCATGGCCATCACCC 1469 29 96.6 32 ............................A GGACTGCCCGCCGCCTACCCACTCATCTTCAA 1408 29 96.6 33 ............................T GTAGGGGTACCCGCGAACCGGAGTAACCGGGAC 1346 29 100.0 32 ............................. GCCGCGCAGTCGAAAGCCGATGCGAACGCGAC 1285 29 100.0 32 ............................. CTCGTATCCCACGCGCTGTCTTTGCGTAGGCC 1224 29 100.0 32 ............................. ACGCATGTCAACTTAAATAAATACGGCGTGTC 1163 29 96.6 32 ............................C TCGTCTCCGGCACCGGCGCGAACAAACAGACC 1102 29 100.0 31 ............................. GTCTCTTTGCAGACAAGCCAACTGTTGGGAG 1042 29 100.0 32 ............................. GCTGGCACCCTGCGTCAATGGGTGCACCGCCA 981 29 100.0 32 ............................. AAGGCCGCGAAATTCGATGAGATCGAGGCGGC 920 29 100.0 32 ............................. TTGCCGCCCGGCGCAAACTCAGATGGCGTCGC 859 29 100.0 32 ............................. AAAGCCAATCCGGACGGGCGCAGGGCGACGGT 798 29 100.0 32 ............................. AACGGGTCGCTCATCGCGTTCGGCGCCCGCGA 737 29 100.0 32 ............................. TCCATGGCCAACTGCTACAAGCTCATGCGTCT 676 29 100.0 32 ............................. AAGTCACAGGTGGCCTGCCATGCCGATTGCAT 615 29 100.0 32 ............................. TCAAACGGCTTGCCTCCTAGGGTGCTGACCGT 554 29 100.0 32 ............................. GCCCCTCTCGTGAAGAAAAGGATAATGAATGT 493 29 100.0 32 ............................. CGTTCTGGCCGGGAGGGAACACGCCTCCGGTC 432 29 100.0 32 ............................. GTGCTGTACTGCCTTGAGTCCTTCGCGTGAGA 371 29 100.0 32 ............................. CTCGTCGCCCAGGGTGTCGTCTCCCGTGAGGG 310 29 100.0 32 ............................. TATGTATGTGCGTGAACCTGTCGAGGACCTGC 249 29 100.0 32 ............................. ATGCTCGGCCAGCCCGCCAGTTGGGCCGACAC 188 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.6 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGATGTGTATGTGGGAAAAGTATCAGCCCGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTATATTCGGCGAACAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAAGGCGAATCCAGCGGGAAATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGCTGCGATGTTAAACTGGGGATTGCGTGCCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAATGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : GCAGGTCGGTTGTTTTGCTTCAATGTCTTTTCAGCAGGCTCATCAGTATTTTTCCGCAGTGTGGGCGGATGGTTTTCCCCGGTCTCGTCATCATGCAGTCAGTGATGTGAGATGAGGAAAGGCACCGGTTCGCACTGCCTGTAGATTCCCGGGTTGCAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10937-8711 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVF01000027.1 Bifidobacterium pseudolongum subsp. globosum strain 1616B Contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10936 29 100.0 32 ............................. ACGTGGTTCTCGCTTCAGGTCACCAAGAAGGC 10875 29 100.0 32 ............................. CGGATCTCCTGTTGTCCGTTGGCTCGGCGGAT 10814 29 100.0 32 ............................. ACCCGCCCGGAACCGCCGGCCGGCAAACCCGA 10753 29 96.6 32 ............................A GGTCGGCTTCACCGACGAGCAGATCACACGTC 10692 29 100.0 32 ............................. CTGGGGCTGCCATGGAGAACAGGCTGTCGATG 10631 29 100.0 32 ............................. CATCGAAGCGGAATACTGCATCGACCGTCCGA 10570 29 100.0 32 ............................. AAATGCCCCTTGCCGGGGATCTCCAGAAAGCG 10509 29 100.0 32 ............................. GGGCGTGAGGAACGCGACAGGGCGTGGCGCGC 10448 29 100.0 32 ............................. GCGTGCGATGGTCTGTGCGCTGGTGGGGCTGA 10387 29 100.0 32 ............................. AACGCGGACGGCTCCCTGCTGCCACCGACGAA 10326 29 100.0 32 ............................. ATCGCCACCATCGTCGTGGCCAAACTCAAGGA 10265 29 100.0 32 ............................. GAGAGCGCGCAGTGAGCCAGCAGAAACACGCC 10204 29 100.0 32 ............................. TAGCCAATGTGCGTGCGTGTGACCGACTAGAG 10143 29 100.0 32 ............................. TCGTCGAGCGTTTCCATGTTGCTAATGGCGCA 10082 29 100.0 32 ............................. TAGAGGCTGCCGCGCCGCGATGGACGCGGCAG 10021 29 100.0 33 ............................. CAAACACTAGGATTGGTGATCTTCTGGTAGGTG 9959 29 100.0 32 ............................. GTCATGGCGCTCGCCTACCGCATCCGCGAAGG 9898 29 100.0 32 ............................. GTGAGCGAGCTCACCGGATCCGGCGTGCTCGA 9837 29 100.0 32 ............................. TTTCGACGCTCTAAGGGCATGTTTTTATCGTA 9776 29 100.0 32 ............................. CGCCACCGCGTCGCTTGATTTATTGCACTCCA 9715 29 100.0 32 ............................. AATTGCTGTATGAAAACTATGACGTGACATTG 9654 29 100.0 32 ............................. TACGCGTCGATCTGTATGCGGAATCCAGCGTT 9593 29 100.0 32 ............................. TCGTAGGTGCGCGCGTCCATGCCCACGCTGTC 9532 29 100.0 32 ............................. GGAAACAGAGTGCAATGGTATGTAGAAAAGTT 9471 29 100.0 32 ............................. CAGGCCGCCACATCGACACAGACCATCGAAGG 9410 29 96.6 32 ............................C GTGTTGAAAAACTCGTCGCGCAATACGGGGTA 9349 29 100.0 32 ............................. TATGTGCCCTGAGTTGCTTTCATAATAAGCGC 9288 29 96.6 31 ............................C TGGGGCATATCGACGTGGTGCTGCCGGTGGC T [9261] 9227 29 100.0 32 ............................. TTGGCCTTCCAGCCGTTGGACCTCATCGAGAA 9166 29 100.0 32 ............................. CGTCGTAGACGCCTTCTCGTATGAGTTTCGCG 9105 29 100.0 32 ............................. GAGGCCGGCGACACGATCAACGACGCGATCCT 9044 29 96.6 32 ............................A ATACCATTCCTGCGAATCTCGAAGATGGCATG 8983 29 100.0 32 ............................. AACATGCTCTACGGCACCTACCTCGACCCGTA 8922 29 100.0 32 ............................. GACAAGATCGCCGGATTCTGCGGTGGAGTCCT 8861 29 100.0 32 ............................. TGGGTCGTCGGGCCGCATTCCGGGAACGTCGG 8800 29 100.0 32 ............................. CACGGCGCGTACATGACGCCGGACACGATCCG 8739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.6 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GCGGGGATGATCCGCGTCATAGCGAACGTCGAACGGTACACGTGGAGTTTGCCCCGCATGCGCGGGGATGATCCGAACATCTAATCCACGGCAATTTCATGAGACCAGTTTGCCCCGCATGCGCGGGGATGATCCGTATCTATCCGAAGGAGGTTGGATACTATGATCGAAGAAAAAACTCCTGATGATGTGTTGCTTGACAAGTTTGTTCAGGTCTTCTCAGATGCACGAGCCTACAAAGAGGCCGACATGCTGCAAAGCATGCAGGTTGCAGGGGAATTCGCATGCGGCTTCGATTTCGCGATGGTGGCATTCAAAGACCTTGGCATCAGCCCCCCAGTGGATTTGGTGCATGCCATGATGGATTCCGTTTGGTTCGAGAAAGACTCATATGCCGATGATATCGGACATGAATTCCTGAAGAAGTCCGAGGCCTCGGATGCGTCGTGATATGGATCTGATTCGGCGTATCCTCATCATGGTGGGTGATTCGCCGGTAC # Right flank : ATCTTCGACGGGCTGCCGATGCCGAGCACGCCGTTTGCCGGCTCTTCCCTTTTTAGTGTGTAAGGGCCGTGCTCCATCATTTGTTGTGTGAATGATAAAAAGAATGGGGCACGACCTGTCCCCGATTTTAGCGTGTTCGATGGTCAGTGCCTGTTGGGGTTGGACCGGTTGGGTCTTCGTGCTCGTTGCATGCGGTTCCTTGATCGCGGAAACGGTTCCGGCGTGTGGCAGATCCGATGCGACACGGGAGACGAATCAGCGCGCGCGTGTGTCTCGTGCGGCTGCGTGTGCCGGGTGCGTACCTCACGCGAACGCACCGTCGTGCACGTGCCCCTGGGATCGGATGCGATTCATCTGAAGGTGCGGGTATGCACCTACGAGTGCGTCACGTGCGCGCGCATGTGGCACGACGGGCAAAAGACCGCGTATTGGGTTCACGATGGAAGTCACGTGCGCGCGCATGTGGCACGACGACCTGAAGGCGTTGGTGTCGGGCCGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13769-11301 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVF01000027.1 Bifidobacterium pseudolongum subsp. globosum strain 1616B Contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13768 29 100.0 32 ............................. CACGCATCCCAGCGAGGAAAACAAGATTATGT 13707 29 100.0 32 ............................. CGTTGTTTGAAGAGTAATACAAAATAATATTA 13646 29 100.0 32 ............................. TCATCGAACACGGTATGACCGTAGTCAATGTT 13585 29 100.0 32 ............................. GCGCTAGCAGAACTTGAAAAAGAACTACGCGC 13524 29 96.6 32 ............................T TCGACATCGCTGCCAAACATGGCGACACCGAG 13463 29 100.0 32 ............................. GAACACGGCACCCGCATCTACCCCAAGAAAGG 13402 29 100.0 32 ............................. GCGCCGGATTCGACGCCTTCCACGTCCCCGCA 13341 29 100.0 32 ............................. CTGGAATCGTACGGGTATACGGGAGAGTGATT 13280 29 96.6 31 ............................A CACTGGCACATCATGAGATACATGTCATTAC 13220 29 100.0 32 ............................. CGTCCGGTCTCGGCAAGGACGCGGCGCAGAAG 13159 29 100.0 32 ............................. TCGCCAGTCAGGCACACCACAAACAAGTCGCA 13098 29 100.0 32 ............................. TGTCACAATATTTTGCAGTGGGAGTAGTGGGT 13037 29 100.0 32 ............................. GCCCCAAGGGCCGCCGAATAGGTCGAGTACAC 12976 29 100.0 32 ............................. GACACATCGAGCGCCCTATCCGCTATTGCCAA 12915 29 100.0 32 ............................. GAGGCAAAAACCATGGCAGGAACCATAGGCGG 12854 29 100.0 32 ............................. TTCCATGCGGCACCGCGTGTCATGAGGTCATG 12793 29 100.0 32 ............................. AACAAAAGGCAAAGCCGTACGAAGAAAAAAAG 12732 29 100.0 32 ............................. GCGAGCGACCCAAGGCAGAACGACGCGGTGGG 12671 29 100.0 32 ............................. GCTCACCGTCGCTCGCCCAGCTCATGAAGCGC 12610 29 100.0 32 ............................. TAGTCCGACCAGTCCACGCTAAGCGGTTCCAT 12549 29 100.0 32 ............................. AACCGGCGCGCCTGCGTCGGGTCACGCTGCAG 12488 29 100.0 32 ............................. GACAGTGGCGGGAACGCGACGATCACGATGCT 12427 29 96.6 32 ............................C TCGTCCAGGACGCGCTCAACACCATCGCCTAC 12366 29 100.0 32 ............................. GTAGCGACGATCATCGCCGGCAGGCAATCCCG 12305 29 100.0 32 ............................. CGAAGTGTCCGGCTCACCCGCAATCGCCGTCA 12244 29 100.0 32 ............................. TTTGGCCGATTTTTGGAACGTTTCGACCCTGA 12183 29 100.0 32 ............................. GGCCCCTCCCCCACGGTGGCACGCCGTTGGGC 12122 29 100.0 32 ............................. CGCATTAGTCGCTCACCGTCGCGCGGAACTCA 12061 29 100.0 32 ............................. AAAACAATGAAAACAACATGGAAAGGTAGCCC 12000 29 100.0 32 ............................. CATTGTACTGCCGGAAAACATCGGTGCGACCA 11939 29 100.0 32 ............................. CTCCGGCCTATGCTGCTCATCGAATATCGGAT 11878 29 100.0 32 ............................. GGCACTGGGTTTGACACCGCATGTTTTTGCCA 11817 29 100.0 32 ............................. GCCGCGATCGATGGTGACGCACAGGGTAAAAC 11756 29 100.0 32 ............................. GCGCTCGCTGGCTGCACGGACTGTGGACTCAG 11695 29 96.6 32 ............................T GAACGACACCGTGCGTATTATCATCGTAGGTG 11634 29 100.0 32 ............................. GTCTACGATTTATACAAGTCGTGGACTGGCCG 11573 29 100.0 32 ............................. TACGGTCGCGCCTTTATGGTAGTCTTTCCAGT 11512 29 100.0 32 ............................. CCCGCCCTCTTTTACATCGGCCCTGAACGTGA 11451 29 100.0 32 ............................. CGTCATAGCGAACGTCGAACGGTACACGTGGA 11390 29 100.0 32 ............................. AACATCTAATCCACGGCAATTTCATGAGACCA 11329 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.7 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GGCCGCCTCGAGACCCTGCGCGGCATCGCCATGGGATTCGACAACTTCGAACACTACCGCCAACGAAGCCTCATCCACTCCGGAAGAATCAAAGACATCCTTACACACTAAAAAGGGAAGAGCCCATAATACAA # Right flank : TATCTATCCGAAGGAGGTTGGATACTATGATCGAAGAAAAAACTCCTGATGATGTGTTGCTTGACAAGTTTGTTCAGGTCTTCTCAGATGCACGAGCCTACAAAGAGGCCGACATGCTGCAAAGCATGCAGGTTGCAGGGGAATTCGCATGCGGCTTCGATTTCGCGATGGTGGCATTCAAAGACCTTGGCATCAGCCCCCCAGTGGATTTGGTGCATGCCATGATGGATTCCGTTTGGTTCGAGAAAGACTCATATGCCGATGATATCGGACATGAATTCCTGAAGAAGTCCGAGGCCTCGGATGCGTCGTGATATGGATCTGATTCGGCGTATCCTCATCATGGTGGGTGATTCGCCGGTACGTTTGCCCCGCATGCGCGGGGATGATCCGACGTGGTTCTCGCTTCAGGTCACCAAGAAGGCGTTTGCCCCGCATGCGCGGGGATGATCCGCGGATCTCCTGTTGTCCGTTGGCTCGGCGGATGTTTGCCCCGCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //