Array 1 698-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQV010000028.1 Clostridium perfringens strain CHD16570R CHD16570R_seq28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================ ================== 697 30 100.0 36 .............................. TAGTCTACTCCAGTACAATCTGGTTTTCCATATAGT 631 30 100.0 36 .............................. AGAAAACATTAAGATGTTCTTTTGATATAGAATAAC 565 30 100.0 36 .............................. TGGTGTAATATATGTTCTCTTCCTTTTTCTCTTTCT 499 30 100.0 34 .............................. TCTATTACCTTTACACCTATTCCTAAATTAACAC 435 30 93.3 36 ................A.....G....... CATGACTTTCTTTATCTTCTTGCTGTAACATAGAAA 369 30 100.0 36 .............................. TTACAACTACATGTTATTGGAGATTTAAGTTTAATA 303 30 90.0 36 ...............ATA............ TAAAGCTTTTGGCACTCACTAGGGTTCTTAAGTTCT 237 30 93.3 128 ...............A.A............ TTGATTAAAATATCTTTTTTATCTTGTTTATATGGTAGTTGAACATTAACTTAACATTAATCTCCATAGAAGCTGTTGAACATTATTTTAAAAATATTTAAGTTGTAACTTATAGTGAGATACTTTGG 79 30 73.3 0 .G....T.....A..A....C....A.T.G | G [59] ========== ====== ====== ====== ============================== ================================================================================================================================ ================== 9 30 94.4 47 GTTGAACATTAACATGGTATGTATTTAAAC # Left flank : AAAAAGATAGTGAGAATATGATCTAAGCATTGAAATAAGAGGATTTAAAGATTATTTCATTTTAGTACTTTAAAAAATAGTGAAATACTGGTAAAATTGTAATATACTTATTGAAATAACTAGGTTTTCATAAAAATCTAATAAGTTAAAATGGCTATTTTACAAGG # Right flank : GGAAATTAAATATTATTATGAAATTTAAGTGCTCTAGTATTAATTATTT # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-1.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGGTATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2020-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQV010000002.1 Clostridium perfringens strain CHD16570R CHD16570R_seq2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 2019 30 100.0 35 .............................. CCTCTAGCACTTAAATTTATAGCTTCTTTTAACAG 1954 30 100.0 36 .............................. CAATATTCGAAATATTCATCTATTCTTCTTTTTAAC 1888 30 100.0 36 .............................. CAACATCGCTCGCCCTTGTATTGTTAGGTATATCAG 1822 30 100.0 36 .............................. AAAAATGGTGAAGATTGAGTGAATATAACTTTATTA 1756 30 100.0 36 .............................. GAAAAAGAATACCGGAAGTTAAGTCTATGTATATCA 1690 30 100.0 34 .............................. TAATGAAGAACTTCAGCCTAACCAAAAAGCTAGT 1626 30 100.0 36 .............................. TCGCACCAATTTTTAAACTTTGTAACTAATAGAGTT 1560 30 100.0 36 .............................. TAGATTCAATAGAGCAAGTAGAAACTTTAGTAGTAA 1494 30 100.0 35 .............................. TAATCAGCCTGATTTTCTTTATAAGTAAGCGTTAA 1429 30 100.0 36 .............................. TACTATTTAACTTTTATATCTAAAATTTCTAAACGA 1363 30 100.0 34 .............................. AACCTAATTCATTTAAAACACCTAAATAGTCCAT 1299 30 100.0 34 .............................. GTTATTACTCCATTATCCATCTGATTTTCTGAAA 1235 30 100.0 36 .............................. ACTGTTAAATTTACATCTTCCATATTTCTTTTGTAT 1169 30 100.0 36 .............................. GATGTACCATGCTTAGCTTTTTTATATTTTCTGCTA 1103 30 100.0 35 .............................. GCAGTTATATTTGGATCATATGGATCTACATAAAT 1038 30 100.0 35 .............................. TAATATCCTCCTAAGCTTTTGGGGGATAAAGCCTA 973 30 100.0 35 .............................. CAGTATGAAATTAAAGAGGCTATTTCCAATCAAGC 908 30 100.0 75 .............................. TTGATTAAAATATCTTTTTTATCTTGTTTATATGGTAGTTGAACATTAACTTAATATTAAATCTTCATAGAAGCT 803 29 73.3 25 ...........TTT..A..A-.......GT TGTAACTTATAGTGAGATACTTTGG Deletion [750] 749 30 73.3 223 .C....T.....A.....G.C....A.T.G GAAATTAAATATTATTATGAAATTTAAGTGCTCTAGTATTAATTATTTTACCAGTAAAAAAGATAGTGAGAATATGATCTAAGCATTGAAATAAGAGGATTTAAAGATTATTTCATTTTAGTACTTTAAAAAAGAGCGAAATACTGGTAAAATTGTAATATACTTATTGAAATAACTAGGTTTTCATAAAAATCTAATAAGTTGAAATGGCTATTTTACAAGG G [732] 495 30 90.0 36 ...............GGT............ GTAGAAGGTAAAGCACCAATTTATTGTGGATGTTTA 429 30 90.0 36 ...............GGT............ AAAGATTATCTTAGATAACAAATTTGGTATAAATGG 363 30 90.0 36 ...............GGT............ CCAGTTCCATTAGTCCAAACTTCCATGAAGCTATGA 297 30 90.0 36 ...............GGT............ TGTTGTCCAAAAGACTTAATTCCTTCAAAATAATTA 231 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 25 30 96.3 45 GTTGAACATTAACATATAATGTATTTAAAC # Left flank : ATATTAAAAAGTTGCCAAAATTTATCTTCATAGTTTTAGCACATTATAAATTTAAAAATAAAAGAAAAATAGGTAGATCACATTTTGAGGTCTATCTATTTTTTATAACTTAATTAATAAAATTAACTAAAAAATTTAAAAAAGATAAATATTGGTAAAATTAAAATGGCTATTTTACAGTGGTTTAACATTAACATAATATGTATTTAAACTGTTTAAGCTATAACTTGTAATGTGATGCTTGGGATTGAATATAAAAGAGTAGTTTATCAATAAGAACTTAAATATTATTATGAAATTTTAAGTAATTTAGAGTTAACTATTTTACCAGTAAAAAAGATGTTGAGAATATTATCTAAGTATTGAAATAAGAGAGATTAAGACAAGTTTTGTTTAAGTACTTTAAAAAAGTGTGAAACACTGGTAAAATTATAATGTACCTCTTGAAATAGACAGGTTTTCATAAGAATCTAATAAATTAAAATGGCTATTTTACAAGT # Right flank : CTAATTTTTAGTACTTAAAACTAATACTTTCATTTTAGTTAAATATTAAAAGAGTAGTCTATTAATAGGAAATTAAATATTATTATGAAATTTTAAGTGTTCTAGTATTAATTATTTTACCAGTAAAAAAGATAGTGAGAATATGATCTAAGCATTGAAATAAGAGGATTTAAAGATTATTTCATTTTAGTACTTTAAAAAA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.88, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATATAATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //