Array 1 10015-7227 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFO01000001.1 Vibrio cholerae strain N2706 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10014 28 100.0 32 ............................ AAGTGACGCAAGTCCGCATAAGCAAAAGTAAA 9954 28 100.0 32 ............................ CATGATAGCGACCTTACTTAACCTGATAGGAA 9894 28 100.0 32 ............................ TTGAACCAATTTTCAGGCATGTTTTTATGCTT 9834 28 100.0 32 ............................ TGCAAACCACGGCTACCGTACTGGAAGATGGA 9774 28 100.0 32 ............................ GGCCACGGAGGTGGAAACTAATCGCACACAAG 9714 28 100.0 32 ............................ GCACTCGCTAATGTGCACCAGTGCCACTTGGT 9654 28 100.0 32 ............................ CCGTTACGTTCTGCGCCGCTCTCTATATTACG 9594 28 100.0 32 ............................ GCAATAGAGGATTGCAAGCAATGGAACAAAAC 9534 28 100.0 32 ............................ CTGCTGGGCCTGTGCAGTTGTCATTGGATGGA 9474 28 100.0 32 ............................ AGAAGTCACCGATCACATCGTAGACTTCGGTT 9414 28 100.0 32 ............................ CGCCCAAAGTTCGATACCTGGTAAATCTTTCA 9354 28 100.0 32 ............................ AGCGAGCTGCACCGGATACCACTCACAAAAAC 9294 28 100.0 32 ............................ GTGATGAAATTAAAGAACGTGGAACGCCAAGC 9234 28 100.0 32 ............................ ATTTAGGAGGCGTTAACTCCGGTGTAAAAACC 9174 28 100.0 32 ............................ TTTAGCGTTAGAAACCGTAGGATATTTTTCAC 9114 28 100.0 32 ............................ TCGCGCGGAAAGTGGCAGTAACCCGCGCCTTC 9054 28 100.0 32 ............................ GCAGAGAAAAACCGCAAACCAGTCAAACAGCG 8994 28 100.0 32 ............................ AATTCCGACAAGGCCGCACTCAACTTGTCCAG 8934 28 100.0 32 ............................ GTCAATGTGGCGTTGCGTTAGCTGAAGTTATC 8874 28 100.0 32 ............................ TGACCCAAGCGCTGACCCTAGCAAGCCTTGGG 8814 28 100.0 32 ............................ CGCTTCAGCTATCACAAGTCGTGCGTTGTGAA 8754 28 100.0 32 ............................ TGATTTGGTATCGCAACGAGGTTGAACTGAAA 8694 28 100.0 32 ............................ TTTGTGGTCGGTGAAGGCGGCCAGATAGGAAG 8634 28 100.0 32 ............................ TGACCCAAGCGCTGACCCTGCTAAGCCTTGGG 8574 28 100.0 32 ............................ AGCATGATCACAGGGATGCGTCTGAATATTGA 8514 28 100.0 32 ............................ ATGGCGGTAGCGGATGAACCAAGCGAACTGAA 8454 28 100.0 32 ............................ AAACCAAGCGAGTGACATAAGCGATCACGGAT 8394 28 100.0 32 ............................ GAAAGGGTTGCGCCATGCCTTTGGTGAAGACT 8334 28 100.0 32 ............................ AATATTGGCGTGCTTGCTGCAACCGTGGTGGT 8274 28 100.0 32 ............................ TATCGCAATCCCAGCGCTAGCGGCGCTCGCCC 8214 28 100.0 32 ............................ TGCAATTCCGGCGCACTCTTGCAGCATTTTAA 8154 28 100.0 32 ............................ ATAGAGAGGAAGCTGAGCAAAATCAACACCGG 8094 28 96.4 32 ...........T................ TAGCAAGCCAGCACAACCCCGCTCTCAGGCTC 8034 28 96.4 32 ...........T................ ACTTAGACTCTAATCGGACACCTTTACTGGTA 7974 28 96.4 32 ...........T................ AAGCCAGAGCAGAATCACGCCTAACCCCATGC 7914 28 96.4 32 ...........T................ TACATGGCCTGATTGCCTTGATAAGCCGCATC 7854 28 96.4 32 ...........T................ AACGGTAAACCGCGGCGGCAAAATCAAGCTGT 7794 28 96.4 32 ...........T................ ATTTAAAGCCGATTGCAAAGCCCATGATTAAT 7734 28 96.4 32 ...........T................ AAACTTCGCAGCACTGGAAAAGCAAGTTATCG 7674 28 96.4 32 ...........T................ ATTCCATCTGGAGCTTGCGAAGACCATTGATC 7614 28 96.4 32 ...........T................ TGTTTTCTTACTTCCCATAATTACGGGTATTT 7554 28 96.4 32 ...........T................ GGAATAACACCCGAAAACGGCGTTTTATACGC 7494 28 96.4 32 ...........T................ AATTGACGTTCTCGATCGCTGCACGTCAGTTC 7434 28 100.0 32 ............................ CGAAGAGATCAGCGCGACGAGAGCGATCTGGC 7374 28 100.0 32 ............................ TTCAGCTTATTGTAGATGCGCAGCAGCCTGCG 7314 28 100.0 32 ............................ ACTGGATAACATCACCAAAGCTAAGATCATTG 7254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 47 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGAAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTACGGCTTGAGTAGCAAAGCGAATGGACAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGTCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGGTCTCCTTATTTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGGGCAAAGCGCACCACTTGATGGGTTTCCCCTAGGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTACAGAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAACGGTAGCTTTGTAGATCAACTCCCGCATCCTTCAAGCGATTAAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGTCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 840-2129 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFO01000075.1 Vibrio cholerae strain N2706 NODE_396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 840 28 100.0 32 ............................ GCAAGCGGTTTTTACACAAACTCAACCAGTAA 900 28 100.0 32 ............................ CTCACCTTATGCCCGGTGACAAGCTGTCTATC 960 28 100.0 32 ............................ TGCTTAAAGTTGCTCATCTACATTGGCCGATT 1020 28 100.0 33 ............................ CGATGAATAACTTGCCTGACTCTGCGCTTACTA 1081 28 100.0 32 ............................ TATCTTGTGCTACTGCATATCCTAATCACTTC 1141 28 100.0 32 ............................ ATCCATTTCTGCGATATCTCGCTTAGTGAAAT 1201 28 100.0 32 ............................ CCTTGGGAATAACCAAAGTAGCCACGTTTTTC 1261 28 100.0 32 ............................ TGCAATCCTTGCCATGCCAGAAAGCAAGCTTT 1321 28 100.0 33 ............................ AGTCAGGGAACCAAGTCAGCGACACCCCTTTAT 1382 28 100.0 32 ............................ CACTCCCCGCCGCCTACTGGCTCAAACACGCC 1442 28 100.0 32 ............................ AGTAGCTGGATTCATCAAGTATTTGGTTTTCA 1502 28 100.0 32 ............................ CAGCTCATCAGGTAGAGGCATGAGCACAAGGC 1562 28 100.0 32 ............................ CTTAACAAAATCGTAAGCGACTAAAGCAGCAA 1622 28 100.0 32 ............................ TGATGGCTCTACAGTGGGTATAAATCGTGCAG 1682 28 100.0 32 ............................ CCAAAAGTAAGGATGAAGCATGAAAGTCGTTC 1742 28 100.0 32 ............................ TTTAATGTTTTAAAATCCTCATTCGTGAAAGA 1802 28 100.0 32 ............................ TGAACGGATCAGCGCGATCGCTTGTTCTTCAA 1862 28 100.0 32 ............................ AGTATCGATTATTCGATTATGGCGGCCTTAGA 1922 28 100.0 32 ............................ TGTGGGGGCTGTGTCAGTTATGCTGAGAATTC 1982 28 100.0 32 ............................ TTTTGTAATTTGAAATCAACAACCCAATTTTT 2042 28 100.0 32 ............................ TTAAATCAGTTGGAGATAATCCTATGAAATTT 2102 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACCGGTTTCTTGGTCTAAAACGAGAGTGCATTCGGTAACAGAGCCGTGTTCAGAAAAAAGTTTACGAATGTCGTGCTCAGTTGTGGTACGAGCAAGGTTGCGAACTAAGAGTTTCATAGTTGTCCGTTGATGTAGAAATAACGGTGAGGATTGTCTCAATAAAGACAGTGGCTACCAAGCGATAGTTTGGTTTTACCGTAAAATAACAGCATTCATAGCAACCAACTGCATAACAAGCGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTGGTGGTAATGCGTTGGCAGCCCCTTAGGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTAAGTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCATTGATTTTATTGGTTTTTAGTGCAATGCGGTAAGTTGGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGCCCTTAATAGGAATATCATGTGAAATATTTTCAAAAAGGTAGTGGTGAATATTTAGTCTTGGTTCATGGAGCATTAACAGATGGTTCTATGTGGCTCCCTCATACAGATTCGTTGTCTCAATATTTTGATGTGGTTTCAGTGACTTTAAGTCATTTTGACAATGATGATAACTTAATTTTTGGTCTGAACTCACACGCTCAAGAACTATGTGAGCTTGTGAAAAAGTTAGTTTCAGATAAGCCCGTGAATGTTGTTGGCTGGTCTTATGGTGCAGATGTTGTATTGAACATGATAGCATCGTCTCAATTGCCATTGTCTAAGGTATTTTTGTATGAGCTGGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1447-2556 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFO01000004.1 Vibrio cholerae strain N2706 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1447 28 100.0 32 ............................ ACAATGCGCTGCCGCATATTGTCGAATTGATC 1507 28 100.0 32 ............................ TGCAAAGAGACTGCGATGTCAGTAAATTGCGC 1567 28 100.0 32 ............................ ATTCTAAGACACAAATAACAGAGCGTACCCAT 1627 28 100.0 32 ............................ TTACCAAGAGTTTATCGATCGCGGCTACTTCA 1687 28 100.0 32 ............................ AGACCGTGATTTCTCAGCCATTCGTGATACTT 1747 28 100.0 32 ............................ AATCGGTACATTAGCAACATTGTGCGCACGCT 1807 28 100.0 32 ............................ TAAAAAATGGGGTGATTAGCAAGGGTTATGGT 1867 28 100.0 32 ............................ AAACCGGATCAGCCTCTCGTGTTGCAGCAAAA 1927 28 100.0 32 ............................ AAGATTTTGCTTAACGTCACTCTGGAGAATGC 1987 28 100.0 32 ............................ AATAGTCAGAGAGTGACATTTGGCGCAGCATG 2047 28 100.0 33 ............................ GCCACCAGAGCCGCCGCCAGACTCATTTAATTT 2108 28 100.0 32 ............................ AGTGTTTGAGCGCTAGCGAGTTTTACTTTAAC 2168 28 96.4 32 .......A.................... TTTAAGAGTAGAGGCCGAAACGGATTGCATAG 2228 28 100.0 32 ............................ TAATGATACATCAACTGGCAGAACACAAGCCG 2288 28 100.0 32 ............................ TATAGAAACCGCCTTTATCCCGTTTTTGCTTT 2348 28 100.0 32 ............................ GCCAAGAGCTTGCGCTGCAAGACAAGCAAGCC 2408 28 100.0 33 ............................ CAGAGAAGACATAAACATAGAGCAACGCACTTA 2469 28 100.0 32 ............................ GCGCCTTGTTCCTTGGTTTTAGTTTTTGGCTC 2529 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTCTGTCACACTATCAAAAAACACACAAAGCTTAGTCAGAGGGCTTAAAGAGCGCAAATTAATTGATGAGTCAGCAGAATATGGTAGTTGGTTAGACGCAATTCAAAATGAAACATTTGCTAAGTGGTGTTGTGATACTGCCATCATAATGTCGGATGCATTTATCAACATATTGCCATCAGGCAAGTACCAAGAAATTTTCAGGGAAATGCTAGAGTTTGAGCGAAACGGCTAACAAACGCTTCAAGAGGGACAGCCAACGCGCGGCATTTTTACCATGCGTTGGTTGTTGTGATTACGTTGTTATGCGGAAAGCTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTGCCCATCTTTTTTCGTTGATTTTTAAGTTGTTGATTTATATCAACAATAAATCGAATAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAATTTTAATC # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAGAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTGGAATCATCAAAATCCAAACTCAATCGCTCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14242-17167 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFO01000087.1 Vibrio cholerae strain N2706 NODE_569, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14242 32 100.0 34 ................................ GAGTTTAACTGCGGTATTGACACCGGTATGTACC 14308 32 100.0 33 ................................ ATCTCTAATCGCCTCTAGCTTTGAGCGAATTGG 14373 32 100.0 34 ................................ CATCAAAAAAGCAGCGACCGTTGACTTGAGCGCG 14439 32 100.0 34 ................................ AAGTGCGCGTTCGCCCAGCAGGCAGCACCAGCGC 14505 32 100.0 34 ................................ TCATTGTGCGTGGCCGTGTAGTAATCACCCAAAC 14571 32 100.0 34 ................................ ACGACATGGGCGATGATGGCAGCCTGTTCGATCC 14637 32 100.0 33 ................................ GTCGATCACCGTTCCGTCAAAATCTTTATCCGT 14702 32 100.0 33 ................................ TTAACCATGAATCTCGATACGTCGCAAGATTAA 14767 32 100.0 34 ................................ TGCCATAAAATTGACGCCCTGATTAAAATGTGCT 14833 32 100.0 33 ................................ AGCTCAACGCTGCGCATCGACGCCCAGCTCACA 14898 32 100.0 36 ................................ CTGAATGGGCGCGATTCCTCACCGCCGCCGTTGACG 14966 32 100.0 34 ................................ ATTAACCGCATAGTGACTGAGGCCGAGTAAATGA 15032 32 100.0 33 ................................ AGGCACAGGTGGCTCTGATATGGGGTTGTGAGT 15097 32 100.0 34 ................................ GCCTTCTTGCGTAACAGTGACCGATACGTATTGA 15163 32 100.0 34 ................................ CAGTGGCGGACACAGAGCGAAGCTTGCGAGAGCT 15229 32 100.0 34 ................................ AGTGTCGAAGGCGCAGTGGTCTAGATTTAGCGTC 15295 32 100.0 33 ................................ GATTAGATGCCACCCCAGACGCATTATATGAAA 15360 32 100.0 34 ................................ TGACAGGATTTCATACTTGTTGAGCTTGATGATT 15426 32 100.0 34 ................................ TCTAGCGCATTTGAATACAACTTGGCGCGAGCTG 15492 32 100.0 33 ................................ TCATTAAGGCGTCGCCATCGTTCTCGATGGCTC 15557 32 100.0 34 ................................ TTTTTCGCTTCGGCCATCATGCGCAAATAATCGG 15623 32 100.0 33 ................................ GTCGAGATATGGCGACGTACTATCGTCTAACCA 15688 32 100.0 35 ................................ CACCCCTGAAGGAGTGTCCTGTTTTTAGTTGGGGC 15755 32 100.0 35 ................................ GCATCCCAGACGCGATCCCAGTTCGCTGCCGCTTG 15822 32 100.0 33 ................................ AAATCACACAAGGCAAGCGCCTTAGCTCTTTAA 15887 32 100.0 33 ................................ TCGATCTGGCGCTCTTGTGCCATTGTGGTAAAG 15952 32 100.0 33 ................................ GTCAAGGCCAGTTGTCCAGTGCAGTCAGCCAAT 16017 32 100.0 35 ................................ CAAGGTTATATATCAATGTGTTCGTCTGTATGGAG 16084 32 100.0 35 ................................ ATCGAGCAGGTGATGATATTCGTAGCCAAGAATGA 16151 32 100.0 34 ................................ TTTGCCTACCTCAAGATCCCATGCGTCTACCTCA 16217 32 100.0 34 ................................ AATCAACTCAGCTTTAATACTGTTGAAATCTTTA 16283 32 100.0 34 ................................ TTGATCCGTCTGCGTATGCCCACTGCTTTAAAAG 16349 32 100.0 33 ................................ ATCTTCACCCCCTGCGAGGTAAGTTAAGTAAGC 16414 32 100.0 35 ................................ ATCTAATATCGATGAAGTGAAAGAGTTCATGACAA 16481 32 100.0 33 ................................ CATCGATACACACTGATGAAGAATGCCGAGGAC 16546 32 100.0 34 ................................ ATCAAACTCAGGCGAGCGATTGCAAACAAGGCAA 16612 32 100.0 34 ................................ TCATATCCATAAAATCACCATGAATTACCCGTTA 16678 32 100.0 33 ................................ ATCTATAAAAGGGATGAAAAGCTCATAGAGCAA 16743 32 100.0 33 ................................ CAGGCATGTTGAATAAGATTGCCATCATCATCG 16808 32 100.0 34 ................................ GTCAACGATTCGAAGCTGGCCGATTGGTGAGATT 16874 32 100.0 33 ................................ TCTAGCTGCTTCGTTAAGTTGTGGGGCTTCTCC 16939 32 96.9 33 ....A........................... ACAATCACCCAGAACACGATTGGTCGTCGCACT 17004 32 100.0 35 ................................ AAAACCATGCAGCCAATAGGAAAAGACAGTGACGG 17071 32 100.0 33 ................................ TTGGAAAGGCGGCGCTGCGCCATTGCCAGCTTT 17136 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 45 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAATCGCCTCAGACAATTAGCTAAGGTGTGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGAAATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTTGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATTTTATAGTCGCTAGGCTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTTCCTCTAAGAAGAGGCA # Right flank : TAAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTAGTCGGTACAATATGCGTTGGGTTGAGGGGGACACTTTACCTGAAGCTCCAAAGCCTAAACTTTCTCCGAAAGAAAGGTATTTAAAGCAACTCCAAGAGAATCATCGACAATCTGAAGAAACGTGGTCTTATGTCCAAGCAAACGAAGACCGTTATGCATTACAAAGAGCGGATGTCCTTACTCGCCGAAATGCCTCACAAATGCTTGATGACTCTCTTCGTGACTCACTAAGTTCGCAGTGTTCACTTGAAGAAGAAATGGCAAAGAATCATCAACATGTTCTTATTGCAGACTTAGAAGATGCCCATAAAATCTTGCACAACATTTGGTTGGAGTCTGGTCGTGATGTTGCTGCCATTGCTGCGAATATCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //