Array 1 50-1785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGK01000089.1 Lactobacillus delbrueckii subsp. bulgaricus strain LBB.B5 contig_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 33 ............................ CGACTGAACGCTATTTGCATCAGATTGACCGGG 111 28 100.0 33 ............................ TGGTTTGAGCGCCCCATGTCGTTTCGCCCCGGG 172 28 100.0 33 ............................ CCACATGGTGGTAACCGACAAGGTTGGCGTCGA 233 28 100.0 33 ............................ CGTGGATCGATTTCTTCTTTAGAAACACGGAAA 294 28 100.0 33 ............................ CGTTTATGCTCTTAGCATAGCACTACTTGGACA 355 28 100.0 33 ............................ TCAATGAGCCGTCATCGTTTACCATCGTGTCCA 416 28 100.0 33 ............................ TAGTTTCTGCACAACCTTTCCTTGTCATCCTTT 477 28 100.0 33 ............................ CAACTACGTGGTAGTCGCTCCGTCACCAGGCTA 538 28 100.0 33 ............................ TGCTCGACCGGCAGATCCGGGCGCTTTGCGAGT 599 28 100.0 33 ............................ ATCATCGGCGTCGTCATTCCTGCTCATGACATG 660 28 100.0 33 ............................ TGAAGCGATCGAACTAGGGAAGGCGAAGAAGTA 721 28 100.0 33 ............................ CATTGTCGACGAGTATGGCGTTGACGACTGGTA 782 28 100.0 33 ............................ CTTCTTTGCCCTTAGGTGTCTTACTCATCATGC 843 28 100.0 33 ............................ CGTGGTCGCCAAGGAAATCGACAACGTGATCGA 904 28 100.0 33 ............................ CGAGACCAGTACTACGAAGAGATCAAGAGACTA 965 28 100.0 33 ............................ TACTATCAAACATAATATAATCCTCCCTTAGAA 1026 28 100.0 33 ............................ TACTCGCCTAGCTTTTCGTTTTCTTCAGATAGT 1087 28 100.0 33 ............................ CCAAGCTGAAAAGGGGCTATCCATGCTTAAAAG 1148 28 100.0 33 ............................ CACGTCTTCAAGCCGAACCCCCACGCTTTCAGA 1209 28 100.0 33 ............................ CGCTGACACAGTGCGGGATTGGCGAGACATCAG 1270 28 100.0 33 ............................ TCAAAAAGCTCAAAGAGACCAAGCCAAAAAAAG 1331 28 100.0 33 ............................ TGTATGATAGTCTTGCAAGTCGGTTGCACTAGC 1392 28 100.0 33 ............................ CACAGCGGCGGACTTGGTCAAAAATTGGGAAGA 1453 28 100.0 33 ............................ CGCTTGTTGCCCAGCTAAAGCTGTAGTCACGTT 1514 28 100.0 33 ............................ TGTTAAACTTGTTGTTAATCATGTTTTTAATTG 1575 28 100.0 33 ............................ TCGTTCACGGGGAAGGCATAAGCTGGGCTGTTG 1636 28 100.0 33 ............................ TAACCAGGATGAACCCGGCTTCTCAAATGCAAT 1697 28 100.0 33 ............................ CGACCTTGAAAACTTGCTAGAGCTATTAATTTT 1758 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : CAAGTGGGGGTGATCCTTGGCTGAGGATGCGATCAGCGTTCCATCGTCGG # Right flank : CGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 646-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGK01000051.1 Lactobacillus delbrueckii subsp. bulgaricus strain LBB.B5 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 645 28 100.0 33 ............................ TAGAGTTTTTAGACACCCCTAAAAGAGCAGGTA 584 28 100.0 33 ............................ CAAACCAAGGTAGACCACCAGATCTACTATGAC 523 28 100.0 33 ............................ TTATGACGCTTATCACGCTTTACATGGCGAAGA 462 28 100.0 33 ............................ CCATGATGTCCAGTATAAAGGCACGATGGGTGC 401 28 100.0 33 ............................ TCAAGATCGCCGCAAAAGGTCTCTTTCAGGAAA 340 28 100.0 33 ............................ TATAAGGTGAAGATGTTTTGATTTATCTTCACC 279 28 100.0 33 ............................ TTCACACGAATCAACTGCTCCCGGTTATCCTGG 218 28 100.0 33 ............................ CTAATAGATTATGTTGATCAAGCATACCGACTG 157 28 100.0 33 ............................ CATTGGCCACAATGCCATCGTCTCCAGTTCGCT 96 28 100.0 33 ............................ CGTTATAGCCAGCCACTAGGGTCAATTTAAAAG 35 28 82.1 0 .....................AAT.C.T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTATCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGCATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAACGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAGAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TTTTAAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35703-34703 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGK01000033.1 Lactobacillus delbrueckii subsp. bulgaricus strain LBB.B5 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 35702 28 100.0 33 ............................ CGACCTTGAAAACTTGCTAGAGCTATTAATTTT 35641 28 100.0 33 ............................ AGCAGATAAAAATATTATTTTGGCCGCTGGTAG 35580 28 100.0 33 ............................ TGTATTGCAACTTTTGCAAGTAGTTAATGAAAC 35519 28 100.0 33 ............................ TATCGAAAACACAAACCGAGCTACAAATAAGTT 35458 28 100.0 33 ............................ CTACCGACAAAAACGGCGAACAAAAAGAGCATT 35397 28 100.0 33 ............................ TAACCAGGATAACGGCCGGCAATATAGCTAACC 35336 28 100.0 33 ............................ CGTGATGGCAAACAGAGCACCGGCAGCAATGGC 35275 28 100.0 33 ............................ CGAGTTTCTGGTAAAGGATAGAGAGGGCTTCAG 35214 28 100.0 33 ............................ CCGGCCGCCTGGTGATCAACTGAAGTAAGTTGA 35153 28 100.0 33 ............................ TCAACTGGAAGCTGGAACTGTATCAACTGGAAG 35092 28 100.0 33 ............................ CTAAACCGTACTTCTTTATCTTATACATGATGA 35031 28 100.0 33 ............................ TCGTTTCCGCTTCTTCTTGCCAATTTTTAACTA 34970 28 100.0 33 ............................ TAAGCACGTATCTTTTAACTACTAGGGGAGGTT 34909 28 100.0 150 ............................ TGGGGGACGTAGTACACCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACAAGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 34731 28 75.0 0 ...........AT.T.C..A.A.....A | T [34724] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 15 28 98.3 41 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : | # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAGCATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAGAACACGGGCAAAAGCTATACAAGCACCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGATGCCAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCATCT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.77, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //