Array 1 166776-165299 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWT01000008.1 Salmonella enterica isolate STY2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166775 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166714 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166653 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166592 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166530 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166469 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166408 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166347 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166286 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 166225 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 166164 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 166103 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 166042 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165981 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165920 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165859 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165797 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165694 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165633 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165572 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165511 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165450 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165389 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165328 29 96.6 0 A............................ | A [165301] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184889-182908 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWT01000008.1 Salmonella enterica isolate STY2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184888 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184827 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184766 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184705 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184644 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 184583 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 184522 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184461 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184400 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184339 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184278 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 184217 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 184156 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 184095 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 184034 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183973 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183912 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183851 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183790 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183729 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183668 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183607 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183546 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183485 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183423 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183362 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183301 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 183240 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 183179 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 183118 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 183057 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182996 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182935 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //