Array 1 314743-317637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQV010000003.1 Salmonella sp. 32010201201800099SM NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 314743 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 314804 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 314865 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 314926 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 314987 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 315048 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 315109 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 315170 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 315231 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 315292 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 315353 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 315414 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 315475 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 315536 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 315597 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 315658 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 315719 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 315780 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 315841 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 315902 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 315963 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 316024 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 316085 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 316146 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 316207 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 316268 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 316329 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 316390 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 316451 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 316512 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 316573 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 316634 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 316695 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 316756 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 316817 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 316878 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 316939 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 317000 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 317061 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 317122 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 317183 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 317244 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 317305 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 317366 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 317427 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 317488 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 317549 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 317610 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334183-336592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQV010000003.1 Salmonella sp. 32010201201800099SM NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334183 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 334244 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 334305 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 334366 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 334427 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 334488 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 334549 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 334610 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 334671 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 334732 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 334793 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 334854 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 334915 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 334976 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 335037 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 335098 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 335159 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 335220 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 335281 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 335342 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 335403 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 335464 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 335525 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 335586 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 335647 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 335708 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 335770 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 335831 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 335892 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 335953 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 336014 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 336075 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 336136 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 336197 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 336258 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 336319 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 336380 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 336441 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 336502 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 336563 29 100.0 0 ............................. | A [336590] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //