Array 1 239442-238635 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP029003.1 Actinobacillus pleuropneumoniae serovar 1 str. 4074 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    239441	    28	 100.0	    32	............................	CAGGTGCTTTAGTTGTTTTTGAGGGTGGTAAA	
    239381	    28	 100.0	    32	............................	TTGTGCCTTGGCGGATTGCTCAAGCGTTTGCA	
    239321	    28	 100.0	    32	............................	TAGCGATAAAATACATCAAAACCATCGTTCAT	
    239261	    28	 100.0	    32	............................	CTGTTCCCTTGCAAATTGTATGCCTGCTTTAG	
    239201	    28	 100.0	    32	............................	TTATGCTGATAAAATGACTCTTAAAGAAATAA	
    239141	    28	 100.0	    32	............................	ATTTAAAGGGGCAGAAAATACATTTTGTAAGG	
    239081	    28	  96.4	    32	.................T..........	GTTAGCGTCTTCTTTATCCCCTTCTCCTTTGC	
    239021	    28	 100.0	    32	............................	ACAATAAATCAATCGCTCTACAATATCTTGCA	
    238961	    28	 100.0	    32	............................	CGGTTTGTTGCTAAATCAGGTGGCGGAAAGCG	
    238901	    28	 100.0	    32	............................	TCCAAGCAGTAAATAATTAGCGCCATCTATCC	
    238841	    28	 100.0	    32	............................	CTTACGGGTTGGCTACGCCAAACCTTGACAAT	
    238781	    28	 100.0	    32	............................	TATCCGATAACCTCTTCCTTAGTTTTGCCACT	
    238721	    28	 100.0	    32	............................	TTGCCAATATCGCAAAATACGTTAAAGATCCC	
    238661	    27	  89.3	     0	.....................C-.C...	|                               	
==========	======	======	======	============================	================================	==================
        14	    28	  99.0	    32	CTTCACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA
# Right flank :  TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACTGATAAAGGCAATGAATCACTCTATTGGAATATTCCTATTGCCAATACCATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTATCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGTGGAGGAACACCGCTATTTAATGGGACGGAAGCGGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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